data_4WNH
#
_model_server_result.job_id            722GP18RoK8FGbuGVPFeXA 
_model_server_result.datetime_utc      '2024-11-08 20:41:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wnh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4WNH 
#
_exptl.entry_id    4WNH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WNH 
_cell.length_a            89.481 
_cell.length_b            89.481 
_cell.length_c            42.895 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   XYS 
_pdbx_entity_branch_link.comp_id_2                   BGC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O3 
_pdbx_entity_branch_link.leaving_atom_id_2           HO3 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C BGC 1 B 1 BGC E 1 GCX 
3 n C XYS 2 B 2 XYS E 1 GCX 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 263 A CYS 349 1_555 A SG CYS 288 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 270 A CYS 356 1_555 A SG CYS 299 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 B SG CYS 9 D CYS 51 1_555 B SG CYS 20 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf4 B SG CYS 14 D CYS 56 1_555 B SG CYS 29 D CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 31 D CYS 73 1_555 B SG CYS 40 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 B OG SER 11 D SER 53 1_555 C C1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 C O3 BGC . B BGC 1 1_555 C C1 XYS . B XYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing 
metalc ? metalc1 A OD2 ASP 139 A ASP 225 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc3 A OD2 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc4 A NE2 HIS 296 A HIS 382 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc5 D MN MN . A MN 401 1_555 E O2A UDX . A UDX 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 D MN MN . A MN 401 1_555 E O2B UDX . A UDX 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4WNH 
_atom_sites.fract_transf_matrix[1][1]    0.011176 
_atom_sites.fract_transf_matrix[1][2]    0.006452 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN A 1 401 1 MN MN . 
E 5 UDX A 1 402 1 UDX UDX . 
F 6 HOH A 1 501 83 HOH HOH . 
F 6 HOH A 2 502 31 HOH HOH . 
F 6 HOH A 3 503 80 HOH HOH . 
F 6 HOH A 4 504 16 HOH HOH . 
F 6 HOH A 5 505 10 HOH HOH . 
F 6 HOH A 6 506 1 HOH HOH . 
F 6 HOH A 7 507 40 HOH HOH . 
F 6 HOH A 8 508 15 HOH HOH . 
F 6 HOH A 9 509 89 HOH HOH . 
F 6 HOH A 10 510 51 HOH HOH . 
F 6 HOH A 11 511 42 HOH HOH . 
F 6 HOH A 12 512 23 HOH HOH . 
F 6 HOH A 13 513 2 HOH HOH . 
F 6 HOH A 14 514 74 HOH HOH . 
F 6 HOH A 15 515 75 HOH HOH . 
F 6 HOH A 16 516 3 HOH HOH . 
F 6 HOH A 17 517 4 HOH HOH . 
F 6 HOH A 18 518 5 HOH HOH . 
F 6 HOH A 19 519 6 HOH HOH . 
F 6 HOH A 20 520 7 HOH HOH . 
F 6 HOH A 21 521 8 HOH HOH . 
F 6 HOH A 22 522 9 HOH HOH . 
F 6 HOH A 23 523 11 HOH HOH . 
F 6 HOH A 24 524 13 HOH HOH . 
F 6 HOH A 25 525 14 HOH HOH . 
F 6 HOH A 26 526 17 HOH HOH . 
F 6 HOH A 27 527 18 HOH HOH . 
F 6 HOH A 28 528 19 HOH HOH . 
F 6 HOH A 29 529 20 HOH HOH . 
F 6 HOH A 30 530 21 HOH HOH . 
F 6 HOH A 31 531 22 HOH HOH . 
F 6 HOH A 32 532 24 HOH HOH . 
F 6 HOH A 33 533 25 HOH HOH . 
F 6 HOH A 34 534 26 HOH HOH . 
F 6 HOH A 35 535 27 HOH HOH . 
F 6 HOH A 36 536 28 HOH HOH . 
F 6 HOH A 37 537 29 HOH HOH . 
F 6 HOH A 38 538 30 HOH HOH . 
F 6 HOH A 39 539 32 HOH HOH . 
F 6 HOH A 40 540 34 HOH HOH . 
F 6 HOH A 41 541 35 HOH HOH . 
F 6 HOH A 42 542 36 HOH HOH . 
F 6 HOH A 43 543 37 HOH HOH . 
F 6 HOH A 44 544 38 HOH HOH . 
F 6 HOH A 45 545 39 HOH HOH . 
F 6 HOH A 46 546 43 HOH HOH . 
F 6 HOH A 47 547 44 HOH HOH . 
F 6 HOH A 48 548 45 HOH HOH . 
F 6 HOH A 49 549 47 HOH HOH . 
F 6 HOH A 50 550 48 HOH HOH . 
F 6 HOH A 51 551 49 HOH HOH . 
F 6 HOH A 52 552 50 HOH HOH . 
F 6 HOH A 53 553 52 HOH HOH . 
F 6 HOH A 54 554 53 HOH HOH . 
F 6 HOH A 55 555 56 HOH HOH . 
F 6 HOH A 56 556 57 HOH HOH . 
F 6 HOH A 57 557 58 HOH HOH . 
F 6 HOH A 58 558 59 HOH HOH . 
F 6 HOH A 59 559 60 HOH HOH . 
F 6 HOH A 60 560 61 HOH HOH . 
F 6 HOH A 61 561 62 HOH HOH . 
F 6 HOH A 62 562 63 HOH HOH . 
F 6 HOH A 63 563 64 HOH HOH . 
F 6 HOH A 64 564 65 HOH HOH . 
F 6 HOH A 65 565 66 HOH HOH . 
F 6 HOH A 66 566 67 HOH HOH . 
F 6 HOH A 67 567 68 HOH HOH . 
F 6 HOH A 68 568 69 HOH HOH . 
F 6 HOH A 69 569 70 HOH HOH . 
F 6 HOH A 70 570 71 HOH HOH . 
F 6 HOH A 71 571 72 HOH HOH . 
F 6 HOH A 72 572 73 HOH HOH . 
F 6 HOH A 73 573 77 HOH HOH . 
F 6 HOH A 74 574 78 HOH HOH . 
F 6 HOH A 75 575 81 HOH HOH . 
F 6 HOH A 76 576 82 HOH HOH . 
F 6 HOH A 77 577 84 HOH HOH . 
F 6 HOH A 78 578 85 HOH HOH . 
F 6 HOH A 79 579 88 HOH HOH . 
F 6 HOH A 80 580 90 HOH HOH . 
G 6 HOH D 1 201 12 HOH HOH . 
G 6 HOH D 2 202 33 HOH HOH . 
G 6 HOH D 3 203 41 HOH HOH . 
G 6 HOH D 4 204 46 HOH HOH . 
G 6 HOH D 5 205 55 HOH HOH . 
G 6 HOH D 6 206 76 HOH HOH . 
G 6 HOH D 7 207 79 HOH HOH . 
G 6 HOH D 8 208 86 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -25.888 
_atom_site.Cartn_y               4.204 
_atom_site.Cartn_z               8.587 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#