data_4WNK
#
_model_server_result.job_id            -x3WE_kjYJ_NyBBqGf6nvg 
_model_server_result.datetime_utc      '2025-06-13 04:44:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    4WNK 
#
_exptl.entry_id    4WNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.496 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-4-{4-fluoro-3-[(pyridin-2-ylmethyl)carbamoyl]phenyl}-N-(1H-indazol-5-yl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WNK 
_cell.length_a            48.106 
_cell.length_b            70.104 
_cell.length_c            182.825 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H22 F N7 O3' 
_chem_comp.formula_weight    499.496 
_chem_comp.id                453 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-4-{4-fluoro-3-[(pyridin-2-ylmethyl)carbamoyl]phenyl}-N-(1H-indazol-5-yl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAT CAP 453 doub 1 n n 
CAP NAO 453 sing 2 n n 
CAP NAQ 453 sing 3 n n 
NAO CAN 453 sing 4 n n 
NAQ CAR 453 sing 5 n n 
CAN CAM 453 sing 6 n n 
CAN CAU 453 sing 7 n n 
CAR CAM 453 doub 8 n n 
CAR CAS 453 sing 9 n n 
OAL CAK 453 doub 10 n n 
CAM CAK 453 sing 11 n n 
CAK NAJ 453 sing 12 n n 
CAU CAZ 453 doub 13 n y 
CAU CAV 453 sing 14 n y 
CAZ CAY 453 sing 15 n y 
CAV CAW 453 doub 16 n y 
CAF CAG 453 doub 17 n y 
CAF CAD 453 sing 18 n y 
NAJ CAG 453 sing 19 n n 
CAC CAD 453 sing 20 n y 
CAC NAB 453 doub 21 n y 
CAY CBB 453 sing 22 n n 
CAY CAX 453 doub 23 n y 
CAG CAH 453 sing 24 n y 
CAD CAE 453 doub 25 n y 
CAW CAX 453 sing 26 n y 
CBB OBC 453 doub 27 n n 
CBB NBD 453 sing 28 n n 
NBD CBE 453 sing 29 n n 
CAX FBA 453 sing 30 n n 
NAB NAA 453 sing 31 n y 
CBE CBF 453 sing 32 n n 
CAH CAI 453 doub 33 n y 
CAE NAA 453 sing 34 n y 
CAE CAI 453 sing 35 n y 
CBF CBK 453 doub 36 n y 
CBF NBG 453 sing 37 n y 
CBK CBJ 453 sing 38 n y 
NBG CBH 453 doub 39 n y 
CBJ CBI 453 doub 40 n y 
CBH CBI 453 sing 41 n y 
NBD H1 453 sing 42 n n 
CBE H2 453 sing 43 n n 
CBE H3 453 sing 44 n n 
CBK H4 453 sing 45 n n 
CBJ H5 453 sing 46 n n 
CBI H6 453 sing 47 n n 
CBH H7 453 sing 48 n n 
CAZ H8 453 sing 49 n n 
CAW H9 453 sing 50 n n 
CAV H10 453 sing 51 n n 
CAN H11 453 sing 52 n n 
NAO H12 453 sing 53 n n 
NAQ H13 453 sing 54 n n 
CAS H14 453 sing 55 n n 
CAS H15 453 sing 56 n n 
CAS H16 453 sing 57 n n 
NAJ H17 453 sing 58 n n 
CAF H18 453 sing 59 n n 
CAH H19 453 sing 60 n n 
CAI H20 453 sing 61 n n 
NAA H21 453 sing 62 n n 
CAC H22 453 sing 63 n n 
#
_atom_sites.entry_id                     4WNK 
_atom_sites.fract_transf_matrix[1][1]    0.020787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 453 A 1 701 1 453 KTX . 
C 3 SO4 A 1 702 1 SO4 SO4 . 
D 4 HOH A 1 801 14 HOH HOH . 
D 4 HOH A 2 802 23 HOH HOH . 
D 4 HOH A 3 803 1 HOH HOH . 
D 4 HOH A 4 804 2 HOH HOH . 
D 4 HOH A 5 805 3 HOH HOH . 
D 4 HOH A 6 806 4 HOH HOH . 
D 4 HOH A 7 807 6 HOH HOH . 
D 4 HOH A 8 808 7 HOH HOH . 
D 4 HOH A 9 809 8 HOH HOH . 
D 4 HOH A 10 810 9 HOH HOH . 
D 4 HOH A 11 811 10 HOH HOH . 
D 4 HOH A 12 812 11 HOH HOH . 
D 4 HOH A 13 813 12 HOH HOH . 
D 4 HOH A 14 814 13 HOH HOH . 
D 4 HOH A 15 815 16 HOH HOH . 
D 4 HOH A 16 816 17 HOH HOH . 
D 4 HOH A 17 817 18 HOH HOH . 
D 4 HOH A 18 818 19 HOH HOH . 
D 4 HOH A 19 819 20 HOH HOH . 
D 4 HOH A 20 820 21 HOH HOH . 
D 4 HOH A 21 821 24 HOH HOH . 
D 4 HOH A 22 822 25 HOH HOH . 
D 4 HOH A 23 823 26 HOH HOH . 
D 4 HOH A 24 824 27 HOH HOH . 
D 4 HOH A 25 825 29 HOH HOH . 
D 4 HOH A 26 826 30 HOH HOH . 
D 4 HOH A 27 827 31 HOH HOH . 
D 4 HOH A 28 828 33 HOH HOH . 
D 4 HOH A 29 829 34 HOH HOH . 
D 4 HOH A 30 830 35 HOH HOH . 
D 4 HOH A 31 831 36 HOH HOH . 
D 4 HOH A 32 832 37 HOH HOH . 
D 4 HOH A 33 833 38 HOH HOH . 
D 4 HOH A 34 834 39 HOH HOH . 
D 4 HOH A 35 835 40 HOH HOH . 
D 4 HOH A 36 836 41 HOH HOH . 
D 4 HOH A 37 837 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OBC 453 . . . B 2 1.071 22.925 -35.27 1 56.9 ? OBC 453 701 A 1 
HETATM 2 C CBB 453 . . . B 2 0.84 21.748 -35.302 1 54.61 ? CBB 453 701 A 1 
HETATM 3 N NBD 453 . . . B 2 -0.37 21.296 -35.026 1 56.05 ? NBD 453 701 A 1 
HETATM 4 C CBE 453 . . . B 2 -1.462 22.167 -34.669 1 57.92 ? CBE 453 701 A 1 
HETATM 5 C CBF 453 . . . B 2 -1.445 22.519 -33.202 1 59.62 ? CBF 453 701 A 1 
HETATM 6 C CBK 453 . . . B 2 -1.953 23.739 -32.796 1 64.84 ? CBK 453 701 A 1 
HETATM 7 C CBJ 453 . . . B 2 -1.95 24.092 -31.45 1 65.91 ? CBJ 453 701 A 1 
HETATM 8 C CBI 453 . . . B 2 -1.436 23.184 -30.536 1 66.78 ? CBI 453 701 A 1 
HETATM 9 C CBH 453 . . . B 2 -0.943 21.971 -30.99 1 63.87 ? CBH 453 701 A 1 
HETATM 10 N NBG 453 . . . B 2 -0.956 21.67 -32.293 1 61.77 ? NBG 453 701 A 1 
HETATM 11 C CAY 453 . . . B 2 1.948 20.815 -35.676 1 51.72 ? CAY 453 701 A 1 
HETATM 12 C CAZ 453 . . . B 2 1.773 19.968 -36.751 1 51.87 ? CAZ 453 701 A 1 
HETATM 13 C CAX 453 . . . B 2 3.111 20.794 -34.994 1 50.88 ? CAX 453 701 A 1 
HETATM 14 F FBA 453 . . . B 2 3.282 21.608 -33.971 1 57.6 ? FBA 453 701 A 1 
HETATM 15 C CAW 453 . . . B 2 4.129 19.936 -35.347 1 53.43 ? CAW 453 701 A 1 
HETATM 16 C CAV 453 . . . B 2 3.97 19.08 -36.415 1 53.48 ? CAV 453 701 A 1 
HETATM 17 C CAU 453 . . . B 2 2.774 19.101 -37.116 1 52.15 ? CAU 453 701 A 1 
HETATM 18 C CAN 453 . . . B 2 2.636 18.183 -38.259 1 53.68 ? CAN 453 701 A 1 
HETATM 19 N NAO 453 . . . B 2 1.7 18.716 -39.244 1 54.94 ? NAO 453 701 A 1 
HETATM 20 C CAP 453 . . . B 2 0.409 18.366 -39.392 1 54.57 ? CAP 453 701 A 1 
HETATM 21 O OAT 453 . . . B 2 -0.353 18.994 -40.127 1 50.97 ? OAT 453 701 A 1 
HETATM 22 N NAQ 453 . . . B 2 -0.049 17.309 -38.76 1 53.35 ? NAQ 453 701 A 1 
HETATM 23 C CAR 453 . . . B 2 0.892 16.477 -38.1 1 51.02 ? CAR 453 701 A 1 
HETATM 24 C CAS 453 . . . B 2 0.244 15.164 -37.802 1 53.21 ? CAS 453 701 A 1 
HETATM 25 C CAM 453 . . . B 2 2.218 16.837 -37.832 1 51.14 ? CAM 453 701 A 1 
HETATM 26 C CAK 453 . . . B 2 2.934 15.694 -37.225 1 51.47 ? CAK 453 701 A 1 
HETATM 27 O OAL 453 . . . B 2 3.796 15.239 -37.962 1 52.6 ? OAL 453 701 A 1 
HETATM 28 N NAJ 453 . . . B 2 2.62 15.214 -36.043 1 48.35 ? NAJ 453 701 A 1 
HETATM 29 C CAG 453 . . . B 2 3.182 14.105 -35.527 1 48.27 ? CAG 453 701 A 1 
HETATM 30 C CAF 453 . . . B 2 4.182 13.308 -36.115 1 46.7 ? CAF 453 701 A 1 
HETATM 31 C CAH 453 . . . B 2 2.562 13.667 -34.341 1 46.93 ? CAH 453 701 A 1 
HETATM 32 C CAI 453 . . . B 2 2.935 12.511 -33.669 1 45.71 ? CAI 453 701 A 1 
HETATM 33 C CAE 453 . . . B 2 3.939 11.736 -34.208 1 45.04 ? CAE 453 701 A 1 
HETATM 34 C CAD 453 . . . B 2 4.58 12.143 -35.459 1 45.78 ? CAD 453 701 A 1 
HETATM 35 N NAA 453 . . . B 2 4.551 10.599 -33.876 1 46.14 ? NAA 453 701 A 1 
HETATM 36 N NAB 453 . . . B 2 5.549 10.218 -34.795 1 47.86 ? NAB 453 701 A 1 
HETATM 37 C CAC 453 . . . B 2 5.57 11.169 -35.774 1 46.86 ? CAC 453 701 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#