data_4WNP # _model_server_result.job_id ewToB05wwl8oRBTVkYzBIQ _model_server_result.datetime_utc '2024-11-28 06:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4WNP # _exptl.entry_id 4WNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WNP _cell.length_a 100.41 _cell.length_b 113.8 _cell.length_c 100.63 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_and_software_defined_assembly 3 ? monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,K 1 1 B,H,L 2 1 C,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 183 A ALA 179 1_555 A N TPO 184 A TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 184 A TPO 180 1_555 A N LEU 185 A LEU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C ALA 183 B ALA 179 1_555 B N TPO 184 B TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C TPO 184 B TPO 180 1_555 B N LEU 185 B LEU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C ALA 183 C ALA 179 1_555 C N TPO 184 C TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C C TPO 184 C TPO 180 1_555 C N LEU 185 C LEU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 D C ALA 183 D ALA 179 1_555 D N TPO 184 D TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C TPO 184 D TPO 180 1_555 D N LEU 185 D LEU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 184 n n C1 C2 GOL sing 185 n n C1 H11 GOL sing 186 n n C1 H12 GOL sing 187 n n O1 HO1 GOL sing 188 n n C2 O2 GOL sing 189 n n C2 C3 GOL sing 190 n n C2 H2 GOL sing 191 n n O2 HO2 GOL sing 192 n n C3 O3 GOL sing 193 n n C3 H31 GOL sing 194 n n C3 H32 GOL sing 195 n n O3 HO3 GOL sing 196 n n # _atom_sites.entry_id 4WNP _atom_sites.fract_transf_matrix[1][1] 0.009959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 301 451 GOL GOL . F 2 GOL A 1 302 452 GOL GOL . G 3 3RJ A 1 303 401 3RJ LIG . H 3 3RJ B 1 401 401 3RJ LIG . I 3 3RJ C 1 401 401 3RJ LIG . J 3 3RJ D 1 401 401 3RJ LIG . K 4 HOH A 1 401 215 HOH HOH . K 4 HOH A 2 402 144 HOH HOH . K 4 HOH A 3 403 49 HOH HOH . K 4 HOH A 4 404 158 HOH HOH . K 4 HOH A 5 405 203 HOH HOH . K 4 HOH A 6 406 116 HOH HOH . K 4 HOH A 7 407 90 HOH HOH . K 4 HOH A 8 408 112 HOH HOH . K 4 HOH A 9 409 164 HOH HOH . K 4 HOH A 10 410 214 HOH HOH . K 4 HOH A 11 411 161 HOH HOH . K 4 HOH A 12 412 207 HOH HOH . K 4 HOH A 13 413 83 HOH HOH . K 4 HOH A 14 414 32 HOH HOH . K 4 HOH A 15 415 76 HOH HOH . K 4 HOH A 16 416 51 HOH HOH . K 4 HOH A 17 417 85 HOH HOH . K 4 HOH A 18 418 101 HOH HOH . K 4 HOH A 19 419 191 HOH HOH . K 4 HOH A 20 420 175 HOH HOH . K 4 HOH A 21 421 109 HOH HOH . K 4 HOH A 22 422 48 HOH HOH . K 4 HOH A 23 423 210 HOH HOH . K 4 HOH A 24 424 121 HOH HOH . K 4 HOH A 25 425 220 HOH HOH . K 4 HOH A 26 426 82 HOH HOH . K 4 HOH A 27 427 151 HOH HOH . K 4 HOH A 28 428 190 HOH HOH . K 4 HOH A 29 429 34 HOH HOH . K 4 HOH A 30 430 154 HOH HOH . K 4 HOH A 31 431 224 HOH HOH . K 4 HOH A 32 432 153 HOH HOH . K 4 HOH A 33 433 163 HOH HOH . K 4 HOH A 34 434 152 HOH HOH . K 4 HOH A 35 435 3 HOH HOH . K 4 HOH A 36 436 6 HOH HOH . K 4 HOH A 37 437 11 HOH HOH . K 4 HOH A 38 438 12 HOH HOH . K 4 HOH A 39 439 13 HOH HOH . K 4 HOH A 40 440 14 HOH HOH . K 4 HOH A 41 441 17 HOH HOH . K 4 HOH A 42 442 22 HOH HOH . K 4 HOH A 43 443 25 HOH HOH . K 4 HOH A 44 444 26 HOH HOH . K 4 HOH A 45 445 29 HOH HOH . K 4 HOH A 46 446 33 HOH HOH . K 4 HOH A 47 447 35 HOH HOH . K 4 HOH A 48 448 39 HOH HOH . K 4 HOH A 49 449 40 HOH HOH . K 4 HOH A 50 450 42 HOH HOH . K 4 HOH A 51 451 46 HOH HOH . K 4 HOH A 52 452 47 HOH HOH . K 4 HOH A 53 453 50 HOH HOH . K 4 HOH A 54 454 52 HOH HOH . K 4 HOH A 55 455 58 HOH HOH . K 4 HOH A 56 456 60 HOH HOH . K 4 HOH A 57 457 62 HOH HOH . K 4 HOH A 58 458 63 HOH HOH . K 4 HOH A 59 459 64 HOH HOH . K 4 HOH A 60 460 70 HOH HOH . K 4 HOH A 61 461 73 HOH HOH . K 4 HOH A 62 462 81 HOH HOH . K 4 HOH A 63 463 89 HOH HOH . K 4 HOH A 64 464 92 HOH HOH . K 4 HOH A 65 465 94 HOH HOH . K 4 HOH A 66 466 95 HOH HOH . K 4 HOH A 67 467 96 HOH HOH . K 4 HOH A 68 468 97 HOH HOH . K 4 HOH A 69 469 99 HOH HOH . K 4 HOH A 70 470 104 HOH HOH . K 4 HOH A 71 471 106 HOH HOH . K 4 HOH A 72 472 108 HOH HOH . K 4 HOH A 73 473 111 HOH HOH . K 4 HOH A 74 474 117 HOH HOH . K 4 HOH A 75 475 130 HOH HOH . K 4 HOH A 76 476 131 HOH HOH . K 4 HOH A 77 477 134 HOH HOH . K 4 HOH A 78 478 136 HOH HOH . K 4 HOH A 79 479 140 HOH HOH . K 4 HOH A 80 480 145 HOH HOH . K 4 HOH A 81 481 146 HOH HOH . K 4 HOH A 82 482 168 HOH HOH . K 4 HOH A 83 483 173 HOH HOH . K 4 HOH A 84 484 183 HOH HOH . K 4 HOH A 85 485 186 HOH HOH . K 4 HOH A 86 486 187 HOH HOH . K 4 HOH A 87 487 193 HOH HOH . K 4 HOH A 88 488 196 HOH HOH . K 4 HOH A 89 489 197 HOH HOH . K 4 HOH A 90 490 212 HOH HOH . K 4 HOH A 91 491 218 HOH HOH . K 4 HOH A 92 492 223 HOH HOH . K 4 HOH A 93 493 225 HOH HOH . K 4 HOH A 94 494 230 HOH HOH . K 4 HOH A 95 495 231 HOH HOH . K 4 HOH A 96 496 232 HOH HOH . K 4 HOH A 97 497 240 HOH HOH . K 4 HOH A 98 498 241 HOH HOH . L 4 HOH B 1 501 213 HOH HOH . L 4 HOH B 2 502 148 HOH HOH . L 4 HOH B 3 503 27 HOH HOH . L 4 HOH B 4 504 159 HOH HOH . L 4 HOH B 5 505 192 HOH HOH . L 4 HOH B 6 506 167 HOH HOH . L 4 HOH B 7 507 1 HOH HOH . L 4 HOH B 8 508 7 HOH HOH . L 4 HOH B 9 509 8 HOH HOH . L 4 HOH B 10 510 16 HOH HOH . L 4 HOH B 11 511 31 HOH HOH . L 4 HOH B 12 512 57 HOH HOH . L 4 HOH B 13 513 59 HOH HOH . L 4 HOH B 14 514 61 HOH HOH . L 4 HOH B 15 515 66 HOH HOH . L 4 HOH B 16 516 77 HOH HOH . L 4 HOH B 17 517 79 HOH HOH . L 4 HOH B 18 518 80 HOH HOH . L 4 HOH B 19 519 84 HOH HOH . L 4 HOH B 20 520 87 HOH HOH . L 4 HOH B 21 521 102 HOH HOH . L 4 HOH B 22 522 110 HOH HOH . L 4 HOH B 23 523 114 HOH HOH . L 4 HOH B 24 524 115 HOH HOH . L 4 HOH B 25 525 120 HOH HOH . L 4 HOH B 26 526 128 HOH HOH . L 4 HOH B 27 527 129 HOH HOH . L 4 HOH B 28 528 142 HOH HOH . L 4 HOH B 29 529 143 HOH HOH . L 4 HOH B 30 530 150 HOH HOH . L 4 HOH B 31 531 165 HOH HOH . L 4 HOH B 32 532 169 HOH HOH . L 4 HOH B 33 533 176 HOH HOH . L 4 HOH B 34 534 194 HOH HOH . L 4 HOH B 35 535 205 HOH HOH . L 4 HOH B 36 536 217 HOH HOH . L 4 HOH B 37 537 222 HOH HOH . L 4 HOH B 38 538 228 HOH HOH . L 4 HOH B 39 539 233 HOH HOH . L 4 HOH B 40 540 234 HOH HOH . L 4 HOH B 41 541 238 HOH HOH . L 4 HOH B 42 542 239 HOH HOH . M 4 HOH C 1 501 235 HOH HOH . M 4 HOH C 2 502 20 HOH HOH . M 4 HOH C 3 503 88 HOH HOH . M 4 HOH C 4 504 200 HOH HOH . M 4 HOH C 5 505 93 HOH HOH . M 4 HOH C 6 506 118 HOH HOH . M 4 HOH C 7 507 91 HOH HOH . M 4 HOH C 8 508 67 HOH HOH . M 4 HOH C 9 509 202 HOH HOH . M 4 HOH C 10 510 119 HOH HOH . M 4 HOH C 11 511 208 HOH HOH . M 4 HOH C 12 512 242 HOH HOH . M 4 HOH C 13 513 43 HOH HOH . M 4 HOH C 14 514 219 HOH HOH . M 4 HOH C 15 515 9 HOH HOH . M 4 HOH C 16 516 15 HOH HOH . M 4 HOH C 17 517 44 HOH HOH . M 4 HOH C 18 518 54 HOH HOH . M 4 HOH C 19 519 74 HOH HOH . M 4 HOH C 20 520 103 HOH HOH . M 4 HOH C 21 521 107 HOH HOH . M 4 HOH C 22 522 125 HOH HOH . M 4 HOH C 23 523 132 HOH HOH . M 4 HOH C 24 524 133 HOH HOH . M 4 HOH C 25 525 138 HOH HOH . M 4 HOH C 26 526 147 HOH HOH . M 4 HOH C 27 527 160 HOH HOH . M 4 HOH C 28 528 180 HOH HOH . M 4 HOH C 29 529 188 HOH HOH . M 4 HOH C 30 530 189 HOH HOH . M 4 HOH C 31 531 201 HOH HOH . M 4 HOH C 32 532 216 HOH HOH . M 4 HOH C 33 533 221 HOH HOH . M 4 HOH C 34 534 229 HOH HOH . M 4 HOH C 35 535 237 HOH HOH . N 4 HOH D 1 501 30 HOH HOH . N 4 HOH D 2 502 113 HOH HOH . N 4 HOH D 3 503 157 HOH HOH . N 4 HOH D 4 504 23 HOH HOH . N 4 HOH D 5 505 65 HOH HOH . N 4 HOH D 6 506 45 HOH HOH . N 4 HOH D 7 507 86 HOH HOH . N 4 HOH D 8 508 36 HOH HOH . N 4 HOH D 9 509 41 HOH HOH . N 4 HOH D 10 510 236 HOH HOH . N 4 HOH D 11 511 184 HOH HOH . N 4 HOH D 12 512 24 HOH HOH . N 4 HOH D 13 513 71 HOH HOH . N 4 HOH D 14 514 78 HOH HOH . N 4 HOH D 15 515 174 HOH HOH . N 4 HOH D 16 516 10 HOH HOH . N 4 HOH D 17 517 124 HOH HOH . N 4 HOH D 18 518 2 HOH HOH . N 4 HOH D 19 519 155 HOH HOH . N 4 HOH D 20 520 18 HOH HOH . N 4 HOH D 21 521 37 HOH HOH . N 4 HOH D 22 522 195 HOH HOH . N 4 HOH D 23 523 127 HOH HOH . N 4 HOH D 24 524 156 HOH HOH . N 4 HOH D 25 525 226 HOH HOH . N 4 HOH D 26 526 243 HOH HOH . N 4 HOH D 27 527 211 HOH HOH . N 4 HOH D 28 528 181 HOH HOH . N 4 HOH D 29 529 198 HOH HOH . N 4 HOH D 30 530 4 HOH HOH . N 4 HOH D 31 531 5 HOH HOH . N 4 HOH D 32 532 19 HOH HOH . N 4 HOH D 33 533 21 HOH HOH . N 4 HOH D 34 534 28 HOH HOH . N 4 HOH D 35 535 38 HOH HOH . N 4 HOH D 36 536 53 HOH HOH . N 4 HOH D 37 537 55 HOH HOH . N 4 HOH D 38 538 56 HOH HOH . N 4 HOH D 39 539 68 HOH HOH . N 4 HOH D 40 540 69 HOH HOH . N 4 HOH D 41 541 72 HOH HOH . N 4 HOH D 42 542 75 HOH HOH . N 4 HOH D 43 543 98 HOH HOH . N 4 HOH D 44 544 100 HOH HOH . N 4 HOH D 45 545 105 HOH HOH . N 4 HOH D 46 546 122 HOH HOH . N 4 HOH D 47 547 123 HOH HOH . N 4 HOH D 48 548 126 HOH HOH . N 4 HOH D 49 549 135 HOH HOH . N 4 HOH D 50 550 137 HOH HOH . N 4 HOH D 51 551 139 HOH HOH . N 4 HOH D 52 552 141 HOH HOH . N 4 HOH D 53 553 149 HOH HOH . N 4 HOH D 54 554 162 HOH HOH . N 4 HOH D 55 555 166 HOH HOH . N 4 HOH D 56 556 170 HOH HOH . N 4 HOH D 57 557 171 HOH HOH . N 4 HOH D 58 558 172 HOH HOH . N 4 HOH D 59 559 177 HOH HOH . N 4 HOH D 60 560 178 HOH HOH . N 4 HOH D 61 561 179 HOH HOH . N 4 HOH D 62 562 182 HOH HOH . N 4 HOH D 63 563 185 HOH HOH . N 4 HOH D 64 564 199 HOH HOH . N 4 HOH D 65 565 204 HOH HOH . N 4 HOH D 66 566 206 HOH HOH . N 4 HOH D 67 567 209 HOH HOH . N 4 HOH D 68 568 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 126.632 44.804 6.636 1 48.28 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 2 128.001 45.17 6.7 1 48.22 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 2 126.46 43.331 7.016 1 50.42 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 2 127.482 42.937 7.907 1 49.16 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 2 125.092 43.106 7.656 1 52.02 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 2 125.133 42.028 8.569 1 53.04 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . E 2 126.055 45.428 7.318 1 57.93 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . E 2 126.256 44.969 5.627 1 57.93 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . E 2 128.107 46.094 6.392 1 57.86 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . E 2 126.518 42.732 6.107 1 60.5 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . E 2 127.414 43.458 8.734 1 59 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . E 2 124.78 44.011 8.176 1 62.43 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . E 2 124.357 42.895 6.879 1 62.43 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . E 2 125.984 41.55 8.473 1 63.65 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 14 #