data_4WNT
#
_model_server_result.job_id            Wt2W7ugLzEnVMqQ24aevuQ 
_model_server_result.datetime_utc      '2024-10-14 13:21:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4WNT 
#
_exptl.entry_id    4WNT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WNT 
_cell.length_a            57.31 
_cell.length_b            126.81 
_cell.length_c            191.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_and_software_defined_assembly 1 
? monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 236 A HIS 258 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A OD2 ASP 248 A ASP 270 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 A OE1 GLU 251 A GLU 273 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc4 A OE2 GLU 265 A GLU 287 1_555 E ZN ZN . A ZN 603 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc5 A OD2 ASP 400 A ASP 422 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc6 A OD2 ASP 400 A ASP 422 1_555 F ZN ZN . A ZN 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc7 A ND1 HIS 404 A HIS 426 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc8 A ND1 HIS 404 A HIS 426 1_555 F ZN ZN . A ZN 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc9 A SG CYS 421 A CYS 443 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc10 B NE2 HIS 236 B HIS 258 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc11 B OD2 ASP 248 B ASP 270 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc12 B OE2 GLU 251 B GLU 273 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc13 B OE2 GLU 265 B GLU 287 1_555 I ZN ZN . B ZN 603 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc14 B SG CYS 421 B CYS 443 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 183 n n 
CHA C4D HEM doub 184 n n 
CHA HHA HEM sing 185 n n 
CHB C4A HEM sing 186 n n 
CHB C1B HEM doub 187 n n 
CHB HHB HEM sing 188 n n 
CHC C4B HEM sing 189 n n 
CHC C1C HEM doub 190 n n 
CHC HHC HEM sing 191 n n 
CHD C4C HEM doub 192 n n 
CHD C1D HEM sing 193 n n 
CHD HHD HEM sing 194 n n 
C1A C2A HEM doub 195 n y 
C1A NA HEM sing 196 n y 
C2A C3A HEM sing 197 n y 
C2A CAA HEM sing 198 n n 
C3A C4A HEM doub 199 n y 
C3A CMA HEM sing 200 n n 
C4A NA HEM sing 201 n y 
CMA HMA HEM sing 202 n n 
CMA HMAA HEM sing 203 n n 
CMA HMAB HEM sing 204 n n 
CAA CBA HEM sing 205 n n 
CAA HAA HEM sing 206 n n 
CAA HAAA HEM sing 207 n n 
CBA CGA HEM sing 208 n n 
CBA HBA HEM sing 209 n n 
CBA HBAA HEM sing 210 n n 
CGA O1A HEM doub 211 n n 
CGA O2A HEM sing 212 n n 
C1B C2B HEM sing 213 n n 
C1B NB HEM sing 214 n n 
C2B C3B HEM doub 215 n n 
C2B CMB HEM sing 216 n n 
C3B C4B HEM sing 217 n n 
C3B CAB HEM sing 218 n n 
C4B NB HEM doub 219 n n 
CMB HMB HEM sing 220 n n 
CMB HMBA HEM sing 221 n n 
CMB HMBB HEM sing 222 n n 
CAB CBB HEM doub 223 n n 
CAB HAB HEM sing 224 n n 
CBB HBB HEM sing 225 n n 
CBB HBBA HEM sing 226 n n 
C1C C2C HEM sing 227 n y 
C1C NC HEM sing 228 n y 
C2C C3C HEM doub 229 n y 
C2C CMC HEM sing 230 n n 
C3C C4C HEM sing 231 n y 
C3C CAC HEM sing 232 n n 
C4C NC HEM sing 233 n y 
CMC HMC HEM sing 234 n n 
CMC HMCA HEM sing 235 n n 
CMC HMCB HEM sing 236 n n 
CAC CBC HEM doub 237 n n 
CAC HAC HEM sing 238 n n 
CBC HBC HEM sing 239 n n 
CBC HBCA HEM sing 240 n n 
C1D C2D HEM sing 241 n n 
C1D ND HEM doub 242 n n 
C2D C3D HEM doub 243 n n 
C2D CMD HEM sing 244 n n 
C3D C4D HEM sing 245 n n 
C3D CAD HEM sing 246 n n 
C4D ND HEM sing 247 n n 
CMD HMD HEM sing 248 n n 
CMD HMDA HEM sing 249 n n 
CMD HMDB HEM sing 250 n n 
CAD CBD HEM sing 251 n n 
CAD HAD HEM sing 252 n n 
CAD HADA HEM sing 253 n n 
CBD CGD HEM sing 254 n n 
CBD HBD HEM sing 255 n n 
CBD HBDA HEM sing 256 n n 
CGD O1D HEM doub 257 n n 
CGD O2D HEM sing 258 n n 
O2A H2A HEM sing 259 n n 
O2D H2D HEM sing 260 n n 
FE NA HEM sing 261 n n 
FE NB HEM sing 262 n n 
FE NC HEM sing 263 n n 
FE ND HEM sing 264 n n 
#
_atom_sites.entry_id                     4WNT 
_atom_sites.fract_transf_matrix[1][1]    0.017449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 498 HEM HEM . 
D 3 AJN A 1 602 499 AJN AJN . 
E 4 ZN A 1 603 500 ZN ZN . 
F 4 ZN A 1 604 501 ZN ZN . 
G 2 HEM B 1 601 498 HEM HEM . 
H 3 AJN B 1 602 499 AJN AJN . 
I 4 ZN B 1 603 500 ZN ZN . 
J 5 HOH A 1 701 502 HOH HOH . 
J 5 HOH A 2 702 514 HOH HOH . 
J 5 HOH A 3 703 515 HOH HOH . 
J 5 HOH A 4 704 505 HOH HOH . 
J 5 HOH A 5 705 504 HOH HOH . 
J 5 HOH A 6 706 524 HOH HOH . 
J 5 HOH A 7 707 528 HOH HOH . 
J 5 HOH A 8 708 503 HOH HOH . 
J 5 HOH A 9 709 506 HOH HOH . 
J 5 HOH A 10 710 507 HOH HOH . 
J 5 HOH A 11 711 508 HOH HOH . 
J 5 HOH A 12 712 509 HOH HOH . 
J 5 HOH A 13 713 510 HOH HOH . 
J 5 HOH A 14 714 511 HOH HOH . 
J 5 HOH A 15 715 512 HOH HOH . 
J 5 HOH A 16 716 513 HOH HOH . 
J 5 HOH A 17 717 516 HOH HOH . 
J 5 HOH A 18 718 517 HOH HOH . 
J 5 HOH A 19 719 518 HOH HOH . 
J 5 HOH A 20 720 519 HOH HOH . 
J 5 HOH A 21 721 520 HOH HOH . 
J 5 HOH A 22 722 521 HOH HOH . 
J 5 HOH A 23 723 522 HOH HOH . 
J 5 HOH A 24 724 523 HOH HOH . 
J 5 HOH A 25 725 525 HOH HOH . 
J 5 HOH A 26 726 526 HOH HOH . 
J 5 HOH A 27 727 527 HOH HOH . 
J 5 HOH A 28 728 529 HOH HOH . 
J 5 HOH A 29 729 530 HOH HOH . 
K 5 HOH B 1 701 509 HOH HOH . 
K 5 HOH B 2 702 526 HOH HOH . 
K 5 HOH B 3 703 518 HOH HOH . 
K 5 HOH B 4 704 507 HOH HOH . 
K 5 HOH B 5 705 514 HOH HOH . 
K 5 HOH B 6 706 501 HOH HOH . 
K 5 HOH B 7 707 502 HOH HOH . 
K 5 HOH B 8 708 503 HOH HOH . 
K 5 HOH B 9 709 504 HOH HOH . 
K 5 HOH B 10 710 505 HOH HOH . 
K 5 HOH B 11 711 506 HOH HOH . 
K 5 HOH B 12 712 508 HOH HOH . 
K 5 HOH B 13 713 510 HOH HOH . 
K 5 HOH B 14 714 511 HOH HOH . 
K 5 HOH B 15 715 512 HOH HOH . 
K 5 HOH B 16 716 513 HOH HOH . 
K 5 HOH B 17 717 515 HOH HOH . 
K 5 HOH B 18 718 516 HOH HOH . 
K 5 HOH B 19 719 517 HOH HOH . 
K 5 HOH B 20 720 519 HOH HOH . 
K 5 HOH B 21 721 520 HOH HOH . 
K 5 HOH B 22 722 521 HOH HOH . 
K 5 HOH B 23 723 522 HOH HOH . 
K 5 HOH B 24 724 523 HOH HOH . 
K 5 HOH B 25 725 524 HOH HOH . 
K 5 HOH B 26 726 525 HOH HOH . 
K 5 HOH B 27 727 527 HOH HOH . 
K 5 HOH B 28 728 528 HOH HOH . 
K 5 HOH B 29 729 529 HOH HOH . 
K 5 HOH B 30 730 530 HOH HOH . 
K 5 HOH B 31 731 531 HOH HOH . 
K 5 HOH B 32 732 532 HOH HOH . 
K 5 HOH B 33 733 533 HOH HOH . 
K 5 HOH B 34 734 534 HOH HOH . 
K 5 HOH B 35 735 535 HOH HOH . 
K 5 HOH B 36 736 536 HOH HOH . 
K 5 HOH B 37 737 537 HOH HOH . 
K 5 HOH B 38 738 538 HOH HOH . 
K 5 HOH B 39 739 539 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 1.573 28.117 -74.61 1 45.55 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . C 2 4.042 25.878 -71.034 1 39.4 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . C 2 7.299 24.366 -74.307 1 47.21 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . C 2 5.229 27.216 -77.689 1 48.32 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . C 2 1.955 27.697 -73.343 1 43.08 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . C 2 1.326 28.05 -72.078 1 41.94 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . C 2 2.002 27.426 -71.092 1 40.06 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . C 2 3.09 26.656 -71.697 1 40.5 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . C 2 1.689 27.515 -69.621 1 35.62 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . C 2 0.094 28.971 -71.893 1 39.89 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . C 2 -1.187 28.232 -72.26 1 39.15 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . C 2 -2.373 29.142 -72.035 1 38.28 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . C 2 -2.446 30.234 -72.675 1 34.39 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . C 2 -3.258 28.758 -71.209 1 38.78 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . C 2 5.151 25.245 -71.581 1 39.87 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . C 2 6.132 24.412 -70.895 1 42.46 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . C 2 7.034 23.993 -71.823 1 46.32 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . C 2 6.647 24.543 -73.111 1 45.19 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . C 2 6.108 24.11 -69.407 1 41.09 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . C 2 8.303 23.109 -71.69 1 35.31 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . C 2 8.772 22.58 -70.564 1 35.1 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . C 2 7.017 24.984 -75.516 1 49.82 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . C 2 7.668 24.723 -76.788 1 46.93 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . C 2 7.113 25.528 -77.723 1 50.55 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . C 2 6.057 26.29 -77.073 1 50.84 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . C 2 8.793 23.741 -76.961 1 44.35 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . C 2 7.422 25.664 -79.25 1 35.06 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . C 2 7.804 24.65 -80.041 1 33.45 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . C 2 4.042 27.713 -77.176 1 47.05 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . C 2 3.095 28.597 -77.841 1 45.1 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . C 2 2.095 28.84 -76.986 1 42.62 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . C 2 2.361 28.125 -75.754 1 45.53 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . C 2 3.225 29.138 -79.246 1 44.14 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . C 2 0.856 29.71 -77.247 1 36.69 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . C 2 -0.304 28.754 -77.539 1 33.81 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . C 2 -1.473 29.555 -78.036 1 32.6 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . C 2 -2.389 28.979 -78.68 1 29.04 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . C 2 -1.464 30.78 -77.753 1 34.38 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . C 2 3.012 26.851 -73.07 1 41.16 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . C 2 5.513 25.284 -72.916 1 43.34 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . C 2 6.046 25.937 -75.733 1 52.21 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . C 2 3.551 27.451 -75.912 1 46.88 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . C 2 4.453 26.217 -74.419 1 36.47 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#