data_4WNT
#
_model_server_result.job_id            1h9VKLM9z6jA48LHUAPnDA 
_model_server_result.datetime_utc      '2024-10-14 13:23:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    4WNT 
#
_exptl.entry_id    4WNT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.427 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Ajmalicine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WNT 
_cell.length_a            57.31 
_cell.length_b            126.81 
_cell.length_c            191.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_and_software_defined_assembly 1 
? monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 236 A HIS 258 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 A OD2 ASP 248 A ASP 270 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 A OE1 GLU 251 A GLU 273 1_555 E ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc4 A OE2 GLU 265 A GLU 287 1_555 E ZN ZN . A ZN 603 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc5 A OD2 ASP 400 A ASP 422 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc6 A OD2 ASP 400 A ASP 422 1_555 F ZN ZN . A ZN 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc7 A ND1 HIS 404 A HIS 426 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc8 A ND1 HIS 404 A HIS 426 1_555 F ZN ZN . A ZN 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc9 A SG CYS 421 A CYS 443 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc10 B NE2 HIS 236 B HIS 258 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc11 B OD2 ASP 248 B ASP 270 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc12 B OE2 GLU 251 B GLU 273 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc13 B OE2 GLU 265 B GLU 287 1_555 I ZN ZN . B ZN 603 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc14 B SG CYS 421 B CYS 443 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C21 H24 N2 O3' 
_chem_comp.formula_weight    352.427 
_chem_comp.id                AJN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Ajmalicine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'methyl (19alpha)-19-methyl-16,17-didehydro-18-oxayohimban-16-carboxylate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 AJN sing 1 n n 
O C1 AJN sing 2 n n 
O C12 AJN sing 3 n n 
C1 C2 AJN sing 4 n n 
C12 C11 AJN doub 5 n n 
C11 C10 AJN sing 6 n n 
C11 C13 AJN sing 7 n n 
C10 C2 AJN sing 8 n n 
C10 C9 AJN sing 9 n n 
C2 C3 AJN sing 10 n n 
C13 O1 AJN doub 11 n n 
C13 O2 AJN sing 12 n n 
C3 N AJN sing 13 n n 
O2 C14 AJN sing 14 n n 
C9 C8 AJN sing 15 n n 
C8 N AJN sing 16 n n 
C8 C7 AJN sing 17 n n 
N C4 AJN sing 18 n n 
C4 C5 AJN sing 19 n n 
C7 N1 AJN sing 20 n y 
C7 C6 AJN doub 21 n y 
N1 C15 AJN sing 22 n y 
C5 C6 AJN sing 23 n n 
C6 C20 AJN sing 24 n y 
C15 C20 AJN doub 25 n y 
C15 C16 AJN sing 26 n y 
C20 C19 AJN sing 27 n y 
C16 C17 AJN doub 28 n y 
C19 C18 AJN doub 29 n y 
C17 C18 AJN sing 30 n y 
C14 H1 AJN sing 31 n n 
C14 H2 AJN sing 32 n n 
C14 H3 AJN sing 33 n n 
C12 H4 AJN sing 34 n n 
C1 H5 AJN sing 35 n n 
C H6 AJN sing 36 n n 
C H7 AJN sing 37 n n 
C H8 AJN sing 38 n n 
C10 H9 AJN sing 39 n n 
C2 H10 AJN sing 40 n n 
C9 H11 AJN sing 41 n n 
C9 H12 AJN sing 42 n n 
C8 H13 AJN sing 43 n n 
C3 H15 AJN sing 44 n n 
C3 H16 AJN sing 45 n n 
N1 H17 AJN sing 46 n n 
C5 H18 AJN sing 47 n n 
C5 H19 AJN sing 48 n n 
C4 H20 AJN sing 49 n n 
C4 H21 AJN sing 50 n n 
C19 H22 AJN sing 51 n n 
C18 H23 AJN sing 52 n n 
C17 H24 AJN sing 53 n n 
C16 H25 AJN sing 54 n n 
#
_atom_sites.entry_id                     4WNT 
_atom_sites.fract_transf_matrix[1][1]    0.017449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 498 HEM HEM . 
D 3 AJN A 1 602 499 AJN AJN . 
E 4 ZN A 1 603 500 ZN ZN . 
F 4 ZN A 1 604 501 ZN ZN . 
G 2 HEM B 1 601 498 HEM HEM . 
H 3 AJN B 1 602 499 AJN AJN . 
I 4 ZN B 1 603 500 ZN ZN . 
J 5 HOH A 1 701 502 HOH HOH . 
J 5 HOH A 2 702 514 HOH HOH . 
J 5 HOH A 3 703 515 HOH HOH . 
J 5 HOH A 4 704 505 HOH HOH . 
J 5 HOH A 5 705 504 HOH HOH . 
J 5 HOH A 6 706 524 HOH HOH . 
J 5 HOH A 7 707 528 HOH HOH . 
J 5 HOH A 8 708 503 HOH HOH . 
J 5 HOH A 9 709 506 HOH HOH . 
J 5 HOH A 10 710 507 HOH HOH . 
J 5 HOH A 11 711 508 HOH HOH . 
J 5 HOH A 12 712 509 HOH HOH . 
J 5 HOH A 13 713 510 HOH HOH . 
J 5 HOH A 14 714 511 HOH HOH . 
J 5 HOH A 15 715 512 HOH HOH . 
J 5 HOH A 16 716 513 HOH HOH . 
J 5 HOH A 17 717 516 HOH HOH . 
J 5 HOH A 18 718 517 HOH HOH . 
J 5 HOH A 19 719 518 HOH HOH . 
J 5 HOH A 20 720 519 HOH HOH . 
J 5 HOH A 21 721 520 HOH HOH . 
J 5 HOH A 22 722 521 HOH HOH . 
J 5 HOH A 23 723 522 HOH HOH . 
J 5 HOH A 24 724 523 HOH HOH . 
J 5 HOH A 25 725 525 HOH HOH . 
J 5 HOH A 26 726 526 HOH HOH . 
J 5 HOH A 27 727 527 HOH HOH . 
J 5 HOH A 28 728 529 HOH HOH . 
J 5 HOH A 29 729 530 HOH HOH . 
K 5 HOH B 1 701 509 HOH HOH . 
K 5 HOH B 2 702 526 HOH HOH . 
K 5 HOH B 3 703 518 HOH HOH . 
K 5 HOH B 4 704 507 HOH HOH . 
K 5 HOH B 5 705 514 HOH HOH . 
K 5 HOH B 6 706 501 HOH HOH . 
K 5 HOH B 7 707 502 HOH HOH . 
K 5 HOH B 8 708 503 HOH HOH . 
K 5 HOH B 9 709 504 HOH HOH . 
K 5 HOH B 10 710 505 HOH HOH . 
K 5 HOH B 11 711 506 HOH HOH . 
K 5 HOH B 12 712 508 HOH HOH . 
K 5 HOH B 13 713 510 HOH HOH . 
K 5 HOH B 14 714 511 HOH HOH . 
K 5 HOH B 15 715 512 HOH HOH . 
K 5 HOH B 16 716 513 HOH HOH . 
K 5 HOH B 17 717 515 HOH HOH . 
K 5 HOH B 18 718 516 HOH HOH . 
K 5 HOH B 19 719 517 HOH HOH . 
K 5 HOH B 20 720 519 HOH HOH . 
K 5 HOH B 21 721 520 HOH HOH . 
K 5 HOH B 22 722 521 HOH HOH . 
K 5 HOH B 23 723 522 HOH HOH . 
K 5 HOH B 24 724 523 HOH HOH . 
K 5 HOH B 25 725 524 HOH HOH . 
K 5 HOH B 26 726 525 HOH HOH . 
K 5 HOH B 27 727 527 HOH HOH . 
K 5 HOH B 28 728 528 HOH HOH . 
K 5 HOH B 29 729 529 HOH HOH . 
K 5 HOH B 30 730 530 HOH HOH . 
K 5 HOH B 31 731 531 HOH HOH . 
K 5 HOH B 32 732 532 HOH HOH . 
K 5 HOH B 33 733 533 HOH HOH . 
K 5 HOH B 34 734 534 HOH HOH . 
K 5 HOH B 35 735 535 HOH HOH . 
K 5 HOH B 36 736 536 HOH HOH . 
K 5 HOH B 37 737 537 HOH HOH . 
K 5 HOH B 38 738 538 HOH HOH . 
K 5 HOH B 39 739 539 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 AJN . . . H 3 -7.801 37.906 -17.256 1 79.54 ? O1 AJN 602 B 1 
HETATM 2 C C13 AJN . . . H 3 -7.589 39.093 -17.275 1 78.48 ? C13 AJN 602 B 1 
HETATM 3 O O2 AJN . . . H 3 -8.416 39.959 -17.86 1 77.08 ? O2 AJN 602 B 1 
HETATM 4 C C14 AJN . . . H 3 -9.586 39.38 -18.488 1 75.96 ? C14 AJN 602 B 1 
HETATM 5 C C11 AJN . . . H 3 -6.379 39.736 -16.7 1 78.42 ? C11 AJN 602 B 1 
HETATM 6 C C12 AJN . . . H 3 -6.489 40.857 -15.988 1 78.71 ? C12 AJN 602 B 1 
HETATM 7 O O AJN . . . H 3 -5.455 41.51 -15.392 1 79.43 ? O AJN 602 B 1 
HETATM 8 C C1 AJN . . . H 3 -4.126 40.915 -15.543 1 78.21 ? C1 AJN 602 B 1 
HETATM 9 C C AJN . . . H 3 -3.849 40.037 -14.345 1 77.21 ? C AJN 602 B 1 
HETATM 10 C C10 AJN . . . H 3 -5.03 39.107 -16.925 1 78.79 ? C10 AJN 602 B 1 
HETATM 11 C C2 AJN . . . H 3 -3.966 40.222 -16.884 1 78.33 ? C2 AJN 602 B 1 
HETATM 12 C C9 AJN . . . H 3 -4.944 38.302 -18.225 1 81.1 ? C9 AJN 602 B 1 
HETATM 13 C C8 AJN . . . H 3 -3.532 37.776 -18.397 1 82.9 ? C8 AJN 602 B 1 
HETATM 14 N N AJN . . . H 3 -2.599 38.913 -18.481 1 82.38 ? N AJN 602 B 1 
HETATM 15 C C3 AJN . . . H 3 -2.597 39.614 -17.191 1 79.83 ? C3 AJN 602 B 1 
HETATM 16 C C7 AJN . . . H 3 -3.377 36.952 -19.637 1 85.56 ? C7 AJN 602 B 1 
HETATM 17 N N1 AJN . . . H 3 -4.305 36.023 -20.065 1 86.39 ? N1 AJN 602 B 1 
HETATM 18 C C15 AJN . . . H 3 -3.812 35.43 -21.218 1 86.64 ? C15 AJN 602 B 1 
HETATM 19 C C20 AJN . . . H 3 -2.57 36.014 -21.506 1 87.46 ? C20 AJN 602 B 1 
HETATM 20 C C6 AJN . . . H 3 -2.311 36.986 -20.476 1 87.08 ? C6 AJN 602 B 1 
HETATM 21 C C5 AJN . . . H 3 -1.138 37.884 -20.238 1 86.9 ? C5 AJN 602 B 1 
HETATM 22 C C4 AJN . . . H 3 -1.241 38.48 -18.835 1 84.99 ? C4 AJN 602 B 1 
HETATM 23 C C19 AJN . . . H 3 -1.854 35.552 -22.611 1 87.62 ? C19 AJN 602 B 1 
HETATM 24 C C18 AJN . . . H 3 -2.377 34.526 -23.383 1 86.87 ? C18 AJN 602 B 1 
HETATM 25 C C17 AJN . . . H 3 -3.602 33.958 -23.076 1 85.59 ? C17 AJN 602 B 1 
HETATM 26 C C16 AJN . . . H 3 -4.341 34.405 -21.992 1 85.96 ? C16 AJN 602 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           26 
#