data_4WOT
#
_model_server_result.job_id            WqGCKQbdXZay83niStMbww 
_model_server_result.datetime_utc      '2025-02-27 21:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wot 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    4WOT 
#
_exptl.entry_id    4WOT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              516.495 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "methyl 3-[({2'-(aminomethyl)-5'-[(3-fluoropyridin-4-yl)carbamoyl]biphenyl-3-yl}carbonyl)amino]-4-fluorobenzoate" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.65 
_cell.angle_gamma         90 
_cell.entry_id            4WOT 
_cell.length_a            148.192 
_cell.length_b            148.226 
_cell.length_c            117.382 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WOT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C28 H22 F2 N4 O4' 
_chem_comp.formula_weight    516.495 
_chem_comp.id                3SG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "methyl 3-[({2'-(aminomethyl)-5'-[(3-fluoropyridin-4-yl)carbamoyl]biphenyl-3-yl}carbonyl)amino]-4-fluorobenzoate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C2 3SG sing 1 n n 
C3 C2 3SG doub 2 n y 
C3 N4 3SG sing 3 n y 
C2 C7 3SG sing 4 n y 
N4 C5 3SG doub 5 n y 
C7 N8 3SG sing 6 n n 
C7 C6 3SG doub 7 n y 
N8 C9 3SG sing 8 n n 
C5 C6 3SG sing 9 n y 
C12 C13 3SG doub 10 n y 
C12 C11 3SG sing 11 n y 
C9 C11 3SG sing 12 n n 
C9 O10 3SG doub 13 n n 
C13 C14 3SG sing 14 n y 
C11 C18 3SG doub 15 n y 
C14 C15 3SG sing 16 n n 
C14 C17 3SG doub 17 n y 
C18 C17 3SG sing 18 n y 
C20 C21 3SG doub 19 n y 
C20 C19 3SG sing 20 n y 
C15 N16 3SG sing 21 n n 
C17 C19 3SG sing 22 n n 
C21 C22 3SG sing 23 n y 
C19 C24 3SG doub 24 n y 
C22 C23 3SG doub 25 n y 
C24 C23 3SG sing 26 n y 
C23 C25 3SG sing 27 n n 
C25 O26 3SG doub 28 n n 
C25 N27 3SG sing 29 n n 
N27 C28 3SG sing 30 n n 
C38 O37 3SG sing 31 n n 
C29 C28 3SG doub 32 n y 
C29 C30 3SG sing 33 n y 
C28 C33 3SG sing 34 n y 
O37 C35 3SG sing 35 n n 
C30 C35 3SG sing 36 n n 
C30 C31 3SG doub 37 n y 
C35 O36 3SG doub 38 n n 
C33 F34 3SG sing 39 n n 
C33 C32 3SG doub 40 n y 
C31 C32 3SG sing 41 n y 
C3 H1 3SG sing 42 n n 
C5 H2 3SG sing 43 n n 
C6 H3 3SG sing 44 n n 
C12 H4 3SG sing 45 n n 
C15 H5 3SG sing 46 n n 
C15 H6 3SG sing 47 n n 
C18 H7 3SG sing 48 n n 
C21 H8 3SG sing 49 n n 
C24 H9 3SG sing 50 n n 
C31 H10 3SG sing 51 n n 
C32 H11 3SG sing 52 n n 
C38 H12 3SG sing 53 n n 
C38 H13 3SG sing 54 n n 
C38 H14 3SG sing 55 n n 
N8 H15 3SG sing 56 n n 
C13 H16 3SG sing 57 n n 
N16 H17 3SG sing 58 n n 
N16 H18 3SG sing 59 n n 
C20 H20 3SG sing 60 n n 
C22 H21 3SG sing 61 n n 
N27 H22 3SG sing 62 n n 
C29 H23 3SG sing 63 n n 
#
_atom_sites.entry_id                     4WOT 
_atom_sites.fract_transf_matrix[1][1]    0.006748 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009708 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3SG A 1 501 1 3SG INX . 
F 2 3SG B 1 501 2 3SG INX . 
G 2 3SG C 1 501 3 3SG INX . 
H 2 3SG D 1 501 4 3SG INX . 
I 3 HOH A 1 601 4 HOH HOH . 
I 3 HOH A 2 602 10 HOH HOH . 
I 3 HOH A 3 603 11 HOH HOH . 
I 3 HOH A 4 604 12 HOH HOH . 
J 3 HOH B 1 601 1 HOH HOH . 
J 3 HOH B 2 602 7 HOH HOH . 
J 3 HOH B 3 603 13 HOH HOH . 
K 3 HOH C 1 601 5 HOH HOH . 
K 3 HOH C 2 602 9 HOH HOH . 
K 3 HOH C 3 603 14 HOH HOH . 
K 3 HOH C 4 604 15 HOH HOH . 
L 3 HOH D 1 601 2 HOH HOH . 
L 3 HOH D 2 602 3 HOH HOH . 
L 3 HOH D 3 603 6 HOH HOH . 
L 3 HOH D 4 604 8 HOH HOH . 
L 3 HOH D 5 605 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 3SG . . . F 2 11.908 -5.917 51.209 1 64.84 ? C2 3SG 501 B 1 
HETATM 2 C C3 3SG . . . F 2 11.407 -4.666 51.521 1 63 ? C3 3SG 501 B 1 
HETATM 3 C C5 3SG . . . F 2 13.534 -3.852 51.911 1 63.23 ? C5 3SG 501 B 1 
HETATM 4 C C6 3SG . . . F 2 14.109 -5.078 51.618 1 66.55 ? C6 3SG 501 B 1 
HETATM 5 C C7 3SG . . . F 2 13.279 -6.161 51.268 1 68.07 ? C7 3SG 501 B 1 
HETATM 6 C C11 3SG . . . F 2 15.197 -9.408 50.993 1 71.27 ? C11 3SG 501 B 1 
HETATM 7 C C12 3SG . . . F 2 15.295 -9.628 49.618 1 70.47 ? C12 3SG 501 B 1 
HETATM 8 C C15 3SG . . . F 2 16.277 -13.234 49.328 1 74.08 ? C15 3SG 501 B 1 
HETATM 9 C C17 3SG . . . F 2 15.825 -11.719 51.412 1 66.75 ? C17 3SG 501 B 1 
HETATM 10 C C18 3SG . . . F 2 15.465 -10.451 51.882 1 68.46 ? C18 3SG 501 B 1 
HETATM 11 C C19 3SG . . . F 2 16.101 -12.77 52.442 1 60.01 ? C19 3SG 501 B 1 
HETATM 12 C C21 3SG . . . F 2 15.544 -13.943 54.472 1 55.5 ? C21 3SG 501 B 1 
HETATM 13 C C23 3SG . . . F 2 17.55 -14.556 53.273 1 56.86 ? C23 3SG 501 B 1 
HETATM 14 C C24 3SG . . . F 2 17.237 -13.566 52.334 1 58.97 ? C24 3SG 501 B 1 
HETATM 15 O O26 3SG . . . F 2 18.888 -16.382 53.849 1 59.35 ? O26 3SG 501 B 1 
HETATM 16 C C30 3SG . . . F 2 22.278 -17.09 50.305 1 85.04 ? C30 3SG 501 B 1 
HETATM 17 C C31 3SG . . . F 2 23.171 -17.398 51.346 1 81.94 ? C31 3SG 501 B 1 
HETATM 18 C C32 3SG . . . F 2 22.91 -16.956 52.63 1 76.67 ? C32 3SG 501 B 1 
HETATM 19 C C33 3SG . . . F 2 21.77 -16.207 52.887 1 75.87 ? C33 3SG 501 B 1 
HETATM 20 C C35 3SG . . . F 2 22.533 -17.561 48.922 1 87.71 ? C35 3SG 501 B 1 
HETATM 21 C C38 3SG . . . F 2 20.756 -17.506 47.313 0 88.16 ? C38 3SG 501 B 1 
HETATM 22 F F1 3SG . . . F 2 11.085 -6.915 50.864 1 67.36 ? F1 3SG 501 B 1 
HETATM 23 N N4 3SG . . . F 2 12.226 -3.681 51.857 1 61.38 ? N4 3SG 501 B 1 
HETATM 24 N N8 3SG . . . F 2 13.745 -7.443 50.921 1 70.77 ? N8 3SG 501 B 1 
HETATM 25 C C9 3SG . . . F 2 14.818 -8.068 51.492 1 75.06 ? C9 3SG 501 B 1 
HETATM 26 O O10 3SG . . . F 2 15.479 -7.58 52.397 1 78.42 ? O10 3SG 501 B 1 
HETATM 27 C C13 3SG . . . F 2 15.648 -10.873 49.14 1 69.64 ? C13 3SG 501 B 1 
HETATM 28 C C14 3SG . . . F 2 15.918 -11.925 50.006 1 70.32 ? C14 3SG 501 B 1 
HETATM 29 N N16 3SG . . . F 2 17.689 -13.235 48.919 1 75.46 ? N16 3SG 501 B 1 
HETATM 30 C C20 3SG . . . F 2 15.258 -12.962 53.539 1 56.37 ? C20 3SG 501 B 1 
HETATM 31 C C22 3SG . . . F 2 16.672 -14.738 54.352 1 53.14 ? C22 3SG 501 B 1 
HETATM 32 C C25 3SG . . . F 2 18.763 -15.413 53.108 1 63.59 ? C25 3SG 501 B 1 
HETATM 33 N N27 3SG . . . F 2 19.707 -15.139 52.148 1 69.56 ? N27 3SG 501 B 1 
HETATM 34 C C28 3SG . . . F 2 20.865 -15.902 51.888 1 76.38 ? C28 3SG 501 B 1 
HETATM 35 C C29 3SG . . . F 2 21.123 -16.343 50.59 1 83.09 ? C29 3SG 501 B 1 
HETATM 36 F F34 3SG . . . F 2 21.474 -15.778 54.115 1 70.52 ? F34 3SG 501 B 1 
HETATM 37 O O36 3SG . . . F 2 23.63 -17.452 48.405 1 87.23 ? O36 3SG 501 B 1 
HETATM 38 O O37 3SG . . . F 2 21.532 -18.137 48.232 1 89.32 ? O37 3SG 501 B 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    146 
_model_server_stats.query_time_ms           761 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#