data_4WPC # _model_server_result.job_id -yAFM6ZtaWFKGCuffrC40A _model_server_result.datetime_utc '2024-12-21 16:11:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4WPC # _exptl.entry_id 4WPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.27 _cell.angle_gamma 90 _cell.entry_id 4WPC _cell.length_a 178.993 _cell.length_b 74.11 _cell.length_c 105.734 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 129 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id O43 _struct_conn.ptnr2_label_comp_id IHP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id IHP _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.407 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 4WPC _atom_sites.fract_transf_matrix[1][1] 0.005587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 401 504 IHP I6P . D 2 IHP B 1 401 503 IHP I6P . E 3 HOH A 1 501 2 HOH HOH . E 3 HOH A 2 502 3 HOH HOH . E 3 HOH A 3 503 1 HOH HOH . E 3 HOH A 4 504 7 HOH HOH . E 3 HOH A 5 505 4 HOH HOH . E 3 HOH A 6 506 5 HOH HOH . F 3 HOH B 1 501 8 HOH HOH . F 3 HOH B 2 502 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . D 2 12.743 -15.365 16.184 1 98.81 ? C1 IHP 401 B 1 HETATM 2 C C2 IHP . . . D 2 13.813 -15.373 15.092 1 98.81 ? C2 IHP 401 B 1 HETATM 3 C C3 IHP . . . D 2 14.315 -13.946 14.857 1 98.81 ? C3 IHP 401 B 1 HETATM 4 C C4 IHP . . . D 2 14.912 -13.396 16.154 1 98.81 ? C4 IHP 401 B 1 HETATM 5 C C5 IHP . . . D 2 13.841 -13.387 17.246 1 98.81 ? C5 IHP 401 B 1 HETATM 6 C C6 IHP . . . D 2 13.34 -14.814 17.481 1 98.81 ? C6 IHP 401 B 1 HETATM 7 O O11 IHP . . . D 2 12.276 -16.697 16.403 1 98.81 ? O11 IHP 401 B 1 HETATM 8 P P1 IHP . . . D 2 10.739 -17.133 16.2 1 98.81 ? P1 IHP 401 B 1 HETATM 9 O O21 IHP . . . D 2 10.3 -16.773 14.833 1 98.81 ? O21 IHP 401 B 1 HETATM 10 O O31 IHP . . . D 2 9.819 -16.369 17.279 1 98.81 ? O31 IHP 401 B 1 HETATM 11 O O41 IHP . . . D 2 10.6 -18.723 16.406 1 98.81 ? O41 IHP 401 B 1 HETATM 12 O O12 IHP . . . D 2 13.256 -15.887 13.881 1 98.81 ? O12 IHP 401 B 1 HETATM 13 P P2 IHP . . . D 2 13.822 -17.202 13.145 1 98.81 ? P2 IHP 401 B 1 HETATM 14 O O22 IHP . . . D 2 13.043 -17.412 11.75 1 98.81 ? O22 IHP 401 B 1 HETATM 15 O O32 IHP . . . D 2 15.268 -17.037 12.882 1 98.81 ? O32 IHP 401 B 1 HETATM 16 O O42 IHP . . . D 2 13.591 -18.487 14.086 1 98.81 ? O42 IHP 401 B 1 HETATM 17 O O13 IHP . . . D 2 13.222 -13.12 14.448 1 98.81 ? O13 IHP 401 B 1 HETATM 18 P P3 IHP . . . D 2 13.191 -12.344 13.037 1 98.81 ? P3 IHP 401 B 1 HETATM 19 O O23 IHP . . . D 2 13.397 -13.313 11.936 1 98.81 ? O23 IHP 401 B 1 HETATM 20 O O33 IHP . . . D 2 11.764 -11.621 12.854 1 98.81 ? O33 IHP 401 B 1 HETATM 21 O O43 IHP . . . D 2 14.361 -11.239 13.006 1 98.81 ? O43 IHP 401 B 1 HETATM 22 O O14 IHP . . . D 2 15.379 -12.062 15.934 1 98.81 ? O14 IHP 401 B 1 HETATM 23 P P4 IHP . . . D 2 16.915 -11.628 16.138 1 98.81 ? P4 IHP 401 B 1 HETATM 24 O O24 IHP . . . D 2 17.315 -11.775 17.691 1 98.81 ? O24 IHP 401 B 1 HETATM 25 O O34 IHP . . . D 2 17.787 -12.499 15.319 1 98.81 ? O34 IHP 401 B 1 HETATM 26 O O44 IHP . . . D 2 17.105 -10.096 15.678 1 98.81 ? O44 IHP 401 B 1 HETATM 27 O O15 IHP . . . D 2 14.399 -12.874 18.456 1 98.81 ? O15 IHP 401 B 1 HETATM 28 P P5 IHP . . . D 2 13.833 -11.558 19.193 1 98.81 ? P5 IHP 401 B 1 HETATM 29 O O25 IHP . . . D 2 12.335 -11.836 19.713 1 98.81 ? O25 IHP 401 B 1 HETATM 30 O O35 IHP . . . D 2 14.777 -11.197 20.448 1 98.81 ? O35 IHP 401 B 1 HETATM 31 O O45 IHP . . . D 2 13.823 -10.424 18.241 1 98.81 ? O45 IHP 401 B 1 HETATM 32 O O16 IHP . . . D 2 12.341 -14.807 18.5 1 98.81 ? O16 IHP 401 B 1 HETATM 33 P P6 IHP . . . D 2 12.486 -15.628 19.879 1 98.81 ? P6 IHP 401 B 1 HETATM 34 O O26 IHP . . . D 2 11.125 -15.496 20.729 1 98.81 ? O26 IHP 401 B 1 HETATM 35 O O36 IHP . . . D 2 12.744 -17.052 19.577 1 98.81 ? O36 IHP 401 B 1 HETATM 36 O O46 IHP . . . D 2 13.712 -15.029 20.733 1 98.81 ? O46 IHP 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #