data_4WPN # _model_server_result.job_id jGH2FZ6ZSDyQdLwO2Rxnvg _model_server_result.datetime_utc '2024-12-02 14:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 4WPN # _exptl.entry_id 4WPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WPN _cell.length_a 109.095 _cell.length_b 109.095 _cell.length_c 83.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 109.095 0 0 3 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 109.095 0 83.256 4 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 83.256 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G YB YB . A YB 606 1_555 H O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 G YB YB . A YB 606 1_555 H O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 G YB YB . A YB 606 1_555 H O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WPN _atom_sites.fract_transf_matrix[1][1] 0.009166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3ST A 1 601 1 3ST A53 . C 3 CL A 1 602 1 CL CL . D 3 CL A 1 603 2 CL CL . E 3 CL A 1 604 3 CL CL . F 4 YB A 1 605 1 YB YB . G 4 YB A 1 606 1 YB YB . H 5 HOH A 1 701 53 HOH HOH . H 5 HOH A 2 702 176 HOH HOH . H 5 HOH A 3 703 40 HOH HOH . H 5 HOH A 4 704 137 HOH HOH . H 5 HOH A 5 705 43 HOH HOH . H 5 HOH A 6 706 123 HOH HOH . H 5 HOH A 7 707 24 HOH HOH . H 5 HOH A 8 708 16 HOH HOH . H 5 HOH A 9 709 8 HOH HOH . H 5 HOH A 10 710 23 HOH HOH . H 5 HOH A 11 711 118 HOH HOH . H 5 HOH A 12 712 22 HOH HOH . H 5 HOH A 13 713 97 HOH HOH . H 5 HOH A 14 714 143 HOH HOH . H 5 HOH A 15 715 95 HOH HOH . H 5 HOH A 16 716 34 HOH HOH . H 5 HOH A 17 717 156 HOH HOH . H 5 HOH A 18 718 13 HOH HOH . H 5 HOH A 19 719 82 HOH HOH . H 5 HOH A 20 720 119 HOH HOH . H 5 HOH A 21 721 29 HOH HOH . H 5 HOH A 22 722 54 HOH HOH . H 5 HOH A 23 723 94 HOH HOH . H 5 HOH A 24 724 140 HOH HOH . H 5 HOH A 25 725 115 HOH HOH . H 5 HOH A 26 726 151 HOH HOH . H 5 HOH A 27 727 68 HOH HOH . H 5 HOH A 28 728 14 HOH HOH . H 5 HOH A 29 729 136 HOH HOH . H 5 HOH A 30 730 19 HOH HOH . H 5 HOH A 31 731 110 HOH HOH . H 5 HOH A 32 732 138 HOH HOH . H 5 HOH A 33 733 9 HOH HOH . H 5 HOH A 34 734 100 HOH HOH . H 5 HOH A 35 735 30 HOH HOH . H 5 HOH A 36 736 17 HOH HOH . H 5 HOH A 37 737 44 HOH HOH . H 5 HOH A 38 738 31 HOH HOH . H 5 HOH A 39 739 62 HOH HOH . H 5 HOH A 40 740 47 HOH HOH . H 5 HOH A 41 741 87 HOH HOH . H 5 HOH A 42 742 51 HOH HOH . H 5 HOH A 43 743 7 HOH HOH . H 5 HOH A 44 744 59 HOH HOH . H 5 HOH A 45 745 85 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 126 HOH HOH . H 5 HOH A 48 748 20 HOH HOH . H 5 HOH A 49 749 35 HOH HOH . H 5 HOH A 50 750 129 HOH HOH . H 5 HOH A 51 751 173 HOH HOH . H 5 HOH A 52 752 10 HOH HOH . H 5 HOH A 53 753 112 HOH HOH . H 5 HOH A 54 754 150 HOH HOH . H 5 HOH A 55 755 154 HOH HOH . H 5 HOH A 56 756 159 HOH HOH . H 5 HOH A 57 757 45 HOH HOH . H 5 HOH A 58 758 86 HOH HOH . H 5 HOH A 59 759 184 HOH HOH . H 5 HOH A 60 760 57 HOH HOH . H 5 HOH A 61 761 99 HOH HOH . H 5 HOH A 62 762 188 HOH HOH . H 5 HOH A 63 763 96 HOH HOH . H 5 HOH A 64 764 79 HOH HOH . H 5 HOH A 65 765 38 HOH HOH . H 5 HOH A 66 766 181 HOH HOH . H 5 HOH A 67 767 174 HOH HOH . H 5 HOH A 68 768 1 HOH HOH . H 5 HOH A 69 769 2 HOH HOH . H 5 HOH A 70 770 3 HOH HOH . H 5 HOH A 71 771 4 HOH HOH . H 5 HOH A 72 772 5 HOH HOH . H 5 HOH A 73 773 6 HOH HOH . H 5 HOH A 74 774 11 HOH HOH . H 5 HOH A 75 775 12 HOH HOH . H 5 HOH A 76 776 15 HOH HOH . H 5 HOH A 77 777 18 HOH HOH . H 5 HOH A 78 778 21 HOH HOH . H 5 HOH A 79 779 25 HOH HOH . H 5 HOH A 80 780 26 HOH HOH . H 5 HOH A 81 781 27 HOH HOH . H 5 HOH A 82 782 28 HOH HOH . H 5 HOH A 83 783 32 HOH HOH . H 5 HOH A 84 784 33 HOH HOH . H 5 HOH A 85 785 36 HOH HOH . H 5 HOH A 86 786 37 HOH HOH . H 5 HOH A 87 787 39 HOH HOH . H 5 HOH A 88 788 41 HOH HOH . H 5 HOH A 89 789 42 HOH HOH . H 5 HOH A 90 790 48 HOH HOH . H 5 HOH A 91 791 49 HOH HOH . H 5 HOH A 92 792 50 HOH HOH . H 5 HOH A 93 793 52 HOH HOH . H 5 HOH A 94 794 55 HOH HOH . H 5 HOH A 95 795 56 HOH HOH . H 5 HOH A 96 796 58 HOH HOH . H 5 HOH A 97 797 60 HOH HOH . H 5 HOH A 98 798 61 HOH HOH . H 5 HOH A 99 799 63 HOH HOH . H 5 HOH A 100 800 64 HOH HOH . H 5 HOH A 101 801 65 HOH HOH . H 5 HOH A 102 802 66 HOH HOH . H 5 HOH A 103 803 67 HOH HOH . H 5 HOH A 104 804 69 HOH HOH . H 5 HOH A 105 805 70 HOH HOH . H 5 HOH A 106 806 71 HOH HOH . H 5 HOH A 107 807 72 HOH HOH . H 5 HOH A 108 808 73 HOH HOH . H 5 HOH A 109 809 74 HOH HOH . H 5 HOH A 110 810 75 HOH HOH . H 5 HOH A 111 811 76 HOH HOH . H 5 HOH A 112 812 77 HOH HOH . H 5 HOH A 113 813 78 HOH HOH . H 5 HOH A 114 814 80 HOH HOH . H 5 HOH A 115 815 81 HOH HOH . H 5 HOH A 116 816 83 HOH HOH . H 5 HOH A 117 817 84 HOH HOH . H 5 HOH A 118 818 88 HOH HOH . H 5 HOH A 119 819 89 HOH HOH . H 5 HOH A 120 820 90 HOH HOH . H 5 HOH A 121 821 91 HOH HOH . H 5 HOH A 122 822 92 HOH HOH . H 5 HOH A 123 823 93 HOH HOH . H 5 HOH A 124 824 98 HOH HOH . H 5 HOH A 125 825 101 HOH HOH . H 5 HOH A 126 826 102 HOH HOH . H 5 HOH A 127 827 103 HOH HOH . H 5 HOH A 128 828 104 HOH HOH . H 5 HOH A 129 829 105 HOH HOH . H 5 HOH A 130 830 106 HOH HOH . H 5 HOH A 131 831 107 HOH HOH . H 5 HOH A 132 832 108 HOH HOH . H 5 HOH A 133 833 109 HOH HOH . H 5 HOH A 134 834 111 HOH HOH . H 5 HOH A 135 835 113 HOH HOH . H 5 HOH A 136 836 114 HOH HOH . H 5 HOH A 137 837 116 HOH HOH . H 5 HOH A 138 838 117 HOH HOH . H 5 HOH A 139 839 120 HOH HOH . H 5 HOH A 140 840 121 HOH HOH . H 5 HOH A 141 841 122 HOH HOH . H 5 HOH A 142 842 124 HOH HOH . H 5 HOH A 143 843 125 HOH HOH . H 5 HOH A 144 844 127 HOH HOH . H 5 HOH A 145 845 128 HOH HOH . H 5 HOH A 146 846 130 HOH HOH . H 5 HOH A 147 847 131 HOH HOH . H 5 HOH A 148 848 132 HOH HOH . H 5 HOH A 149 849 133 HOH HOH . H 5 HOH A 150 850 134 HOH HOH . H 5 HOH A 151 851 135 HOH HOH . H 5 HOH A 152 852 139 HOH HOH . H 5 HOH A 153 853 141 HOH HOH . H 5 HOH A 154 854 142 HOH HOH . H 5 HOH A 155 855 144 HOH HOH . H 5 HOH A 156 856 145 HOH HOH . H 5 HOH A 157 857 146 HOH HOH . H 5 HOH A 158 858 147 HOH HOH . H 5 HOH A 159 859 148 HOH HOH . H 5 HOH A 160 860 149 HOH HOH . H 5 HOH A 161 861 152 HOH HOH . H 5 HOH A 162 862 153 HOH HOH . H 5 HOH A 163 863 155 HOH HOH . H 5 HOH A 164 864 157 HOH HOH . H 5 HOH A 165 865 158 HOH HOH . H 5 HOH A 166 866 160 HOH HOH . H 5 HOH A 167 867 161 HOH HOH . H 5 HOH A 168 868 162 HOH HOH . H 5 HOH A 169 869 163 HOH HOH . H 5 HOH A 170 870 164 HOH HOH . H 5 HOH A 171 871 165 HOH HOH . H 5 HOH A 172 872 166 HOH HOH . H 5 HOH A 173 873 167 HOH HOH . H 5 HOH A 174 874 168 HOH HOH . H 5 HOH A 175 875 169 HOH HOH . H 5 HOH A 176 876 170 HOH HOH . H 5 HOH A 177 877 171 HOH HOH . H 5 HOH A 178 878 172 HOH HOH . H 5 HOH A 179 879 175 HOH HOH . H 5 HOH A 180 880 177 HOH HOH . H 5 HOH A 181 881 178 HOH HOH . H 5 HOH A 182 882 179 HOH HOH . H 5 HOH A 183 883 180 HOH HOH . H 5 HOH A 184 884 182 HOH HOH . H 5 HOH A 185 885 183 HOH HOH . H 5 HOH A 186 886 185 HOH HOH . H 5 HOH A 187 887 186 HOH HOH . H 5 HOH A 188 888 187 HOH HOH . H 5 HOH A 189 889 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 25.249 _atom_site.Cartn_y 23.756 _atom_site.Cartn_z 40.544 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 606 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 232 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 1 #