data_4WQ0 # _model_server_result.job_id og4I0cj0mFZiLwswD22ZDg _model_server_result.datetime_utc '2024-11-24 19:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4WQ0 # _exptl.entry_id 4WQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WQ0 _cell.length_a 127.812 _cell.length_b 127.812 _cell.length_c 76.584 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 346 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 353 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.087 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 261 n n CHA C4D HEM doub 262 n n CHA HHA HEM sing 263 n n CHB C4A HEM sing 264 n n CHB C1B HEM doub 265 n n CHB HHB HEM sing 266 n n CHC C4B HEM sing 267 n n CHC C1C HEM doub 268 n n CHC HHC HEM sing 269 n n CHD C4C HEM doub 270 n n CHD C1D HEM sing 271 n n CHD HHD HEM sing 272 n n C1A C2A HEM doub 273 n y C1A NA HEM sing 274 n y C2A C3A HEM sing 275 n y C2A CAA HEM sing 276 n n C3A C4A HEM doub 277 n y C3A CMA HEM sing 278 n n C4A NA HEM sing 279 n y CMA HMA HEM sing 280 n n CMA HMAA HEM sing 281 n n CMA HMAB HEM sing 282 n n CAA CBA HEM sing 283 n n CAA HAA HEM sing 284 n n CAA HAAA HEM sing 285 n n CBA CGA HEM sing 286 n n CBA HBA HEM sing 287 n n CBA HBAA HEM sing 288 n n CGA O1A HEM doub 289 n n CGA O2A HEM sing 290 n n C1B C2B HEM sing 291 n n C1B NB HEM sing 292 n n C2B C3B HEM doub 293 n n C2B CMB HEM sing 294 n n C3B C4B HEM sing 295 n n C3B CAB HEM sing 296 n n C4B NB HEM doub 297 n n CMB HMB HEM sing 298 n n CMB HMBA HEM sing 299 n n CMB HMBB HEM sing 300 n n CAB CBB HEM doub 301 n n CAB HAB HEM sing 302 n n CBB HBB HEM sing 303 n n CBB HBBA HEM sing 304 n n C1C C2C HEM sing 305 n y C1C NC HEM sing 306 n y C2C C3C HEM doub 307 n y C2C CMC HEM sing 308 n n C3C C4C HEM sing 309 n y C3C CAC HEM sing 310 n n C4C NC HEM sing 311 n y CMC HMC HEM sing 312 n n CMC HMCA HEM sing 313 n n CMC HMCB HEM sing 314 n n CAC CBC HEM doub 315 n n CAC HAC HEM sing 316 n n CBC HBC HEM sing 317 n n CBC HBCA HEM sing 318 n n C1D C2D HEM sing 319 n n C1D ND HEM doub 320 n n C2D C3D HEM doub 321 n n C2D CMD HEM sing 322 n n C3D C4D HEM sing 323 n n C3D CAD HEM sing 324 n n C4D ND HEM sing 325 n n CMD HMD HEM sing 326 n n CMD HMDA HEM sing 327 n n CMD HMDB HEM sing 328 n n CAD CBD HEM sing 329 n n CAD HAD HEM sing 330 n n CAD HADA HEM sing 331 n n CBD CGD HEM sing 332 n n CBD HBD HEM sing 333 n n CBD HBDA HEM sing 334 n n CGD O1D HEM doub 335 n n CGD O2D HEM sing 336 n n O2A H2A HEM sing 337 n n O2D H2D HEM sing 338 n n FE NA HEM sing 339 n n FE NB HEM sing 340 n n FE NC HEM sing 341 n n FE ND HEM sing 342 n n # _atom_sites.entry_id 4WQ0 _atom_sites.fract_transf_matrix[1][1] 0.007824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1 HEM HEI . C 3 EFO A 1 502 1 EFO EFO . D 4 HOH A 1 601 23 HOH HOH . D 4 HOH A 2 602 19 HOH HOH . D 4 HOH A 3 603 1 HOH HOH . D 4 HOH A 4 604 2 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 4 HOH HOH . D 4 HOH A 7 607 6 HOH HOH . D 4 HOH A 8 608 9 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 12 HOH HOH . D 4 HOH A 11 611 16 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 21 HOH HOH . D 4 HOH A 14 614 22 HOH HOH . D 4 HOH A 15 615 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -11.387 -40.836 -5.131 1 50.41 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -11.156 -40.615 -10.109 1 53.33 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -12.895 -45.198 -10.287 1 52.69 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -12.552 -45.632 -5.343 1 52.85 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -11.172 -40.36 -6.505 1 56.69 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -10.727 -39.076 -6.778 1 58.6 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -10.67 -39.053 -8.238 1 52.71 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -11.093 -40.312 -8.655 1 52.44 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -10.243 -37.885 -9.084 1 52.13 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -10.356 -37.951 -5.842 1 65.17 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -11.587 -37.112 -5.499 1 71.85 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -11.208 -36.037 -4.503 1 78.1 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -12.108 -35.446 -3.814 1 80.92 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -9.974 -35.803 -4.427 1 70.64 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -11.653 -41.951 -10.53 1 52.82 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -11.731 -42.226 -11.891 1 53.05 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -12.22 -43.486 -11.957 1 52.77 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -12.404 -43.885 -10.659 1 51.26 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -11.369 -41.311 -13.027 1 55.54 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -12.498 -44.324 -13.153 1 57.94 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -12.209 -43.996 -14.395 1 61.45 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -12.951 -45.737 -8.939 1 56.55 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -13.267 -47.053 -8.771 1 54.31 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -13.202 -47.175 -7.332 1 54.42 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -12.816 -45.934 -6.794 1 55.21 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -13.631 -48.052 -9.833 1 56.12 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -13.468 -48.501 -6.747 1 59.85 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -13.279 -48.811 -5.49 1 67.05 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -12.898 -44.214 -5.038 1 51.95 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -12.76 -43.799 -3.636 1 51.46 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -12.235 -42.467 -3.465 1 48.49 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -11.947 -42.115 -4.76 1 47.71 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -13.292 -44.731 -2.571 1 52.39 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -12.063 -41.734 -2.176 1 51.02 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -10.722 -42.09 -1.56 1 52.88 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -10.402 -41.103 -0.461 1 54.75 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -11.021 -40.022 -0.428 1 54.61 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -9.53 -41.381 0.39 1 58.19 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -11.439 -41.081 -7.611 1 54.45 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -12.028 -42.995 -9.784 1 50.29 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -12.703 -45.044 -7.824 1 55.01 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -12.18 -43.082 -5.625 1 50.18 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -12.088 -43.051 -7.72 1 55.42 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #