data_4WQ0 # _model_server_result.job_id Yd27HG1xzou3zqa_hODfhw _model_server_result.datetime_utc '2024-11-28 12:32:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4WQ0 # _exptl.entry_id 4WQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 791.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Oligomycin A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WQ0 _cell.length_a 127.812 _cell.length_b 127.812 _cell.length_c 76.584 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 346 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 353 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.087 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C45 H74 O11' _chem_comp.formula_weight 791.062 _chem_comp.id EFO _chem_comp.mon_nstd_flag . _chem_comp.name 'Oligomycin A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(1R,4E,5'S,6S,6'S,7R,8S,10R,11R,12S,14R,15S,16R,18E,20E,22R,25S,27R,28S,29R)-22-ethyl-7,11,14,15-tetrahydroxy-6'-[(2R)-2-hydroxypropyl]-5',6,8,10,12,14,16,28,29-nonamethyl-3',4',5',6'-tetrahydro-3H,9H,13H-spiro[2,26-dioxabicyclo[23.3.1]nonacosa-4,18,20-triene-27,2'-pyran]-3,9,13-trione" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2A C23 EFO sing 83 n n C2B C25 EFO sing 84 n n O25 C25 EFO sing 85 n n C23 C22 EFO sing 86 n n C23 C24 EFO sing 87 n n C2D C29 EFO sing 88 n n C22 C21 EFO sing 89 n n C25 C24 EFO sing 90 n n C25 C26 EFO sing 91 n n C24 O24 EFO sing 92 n n C29 C30 EFO sing 93 n n C29 C28 EFO sing 94 n n C21 C20 EFO doub 95 e n O30 C30 EFO doub 96 n n C26 C27 EFO sing 97 n n C26 O26 EFO doub 98 n n C30 C31 EFO sing 99 n n C27 C28 EFO sing 100 n n C27 C2C EFO sing 101 n n C3A C31 EFO sing 102 n n C28 O28 EFO sing 103 n n C20 C19 EFO sing 104 n n C31 C32 EFO sing 105 n n O32 C32 EFO sing 106 n n C19 C18 EFO doub 107 e n C32 C33 EFO sing 108 n n C18 C17 EFO sing 109 n n C33 C34 EFO sing 110 n n C33 C3B EFO sing 111 n n C1B C12 EFO sing 112 n n C34 C35 EFO doub 113 e n C17 C1C EFO sing 114 n n C17 C16 EFO sing 115 n n C35 C36 EFO sing 116 n n C1D C1C EFO sing 117 n n C15 C16 EFO sing 118 n n C15 C13 EFO sing 119 n n C12 C13 EFO sing 120 n n C12 C11 EFO sing 121 n n C36 O36 EFO doub 122 n n C36 O37 EFO sing 123 n n O37 C11 EFO sing 124 n n C13 O14 EFO sing 125 n n C11 C10 EFO sing 126 n n O14 C8 EFO sing 127 n n C10 C8 EFO sing 128 n n C10 C1A EFO sing 129 n n C8 C7 EFO sing 130 n n C8 O9 EFO sing 131 n n O2 C2 EFO sing 132 n n C7 C6 EFO sing 133 n n O9 C4 EFO sing 134 n n C2 C1 EFO sing 135 n n C2 C3 EFO sing 136 n n C4 C3 EFO sing 137 n n C4 C5 EFO sing 138 n n C6 C5 EFO sing 139 n n C5 C51 EFO sing 140 n n C1A H1 EFO sing 141 n n C1A H2 EFO sing 142 n n C1A H3 EFO sing 143 n n C10 H4 EFO sing 144 n n C11 H5 EFO sing 145 n n C12 H6 EFO sing 146 n n C1B H7 EFO sing 147 n n C1B H8 EFO sing 148 n n C1B H9 EFO sing 149 n n C35 H10 EFO sing 150 n n C34 H11 EFO sing 151 n n C33 H12 EFO sing 152 n n C3B H13 EFO sing 153 n n C3B H14 EFO sing 154 n n C3B H15 EFO sing 155 n n C32 H16 EFO sing 156 n n O32 H17 EFO sing 157 n n C31 H18 EFO sing 158 n n C3A H19 EFO sing 159 n n C3A H20 EFO sing 160 n n C3A H21 EFO sing 161 n n C29 H22 EFO sing 162 n n C2D H23 EFO sing 163 n n C2D H24 EFO sing 164 n n C2D H25 EFO sing 165 n n C28 H26 EFO sing 166 n n O28 H27 EFO sing 167 n n C27 H28 EFO sing 168 n n C2C H29 EFO sing 169 n n C2C H30 EFO sing 170 n n C2C H31 EFO sing 171 n n C2B H32 EFO sing 172 n n C2B H33 EFO sing 173 n n C2B H34 EFO sing 174 n n O25 H35 EFO sing 175 n n C24 H36 EFO sing 176 n n O24 H37 EFO sing 177 n n C23 H38 EFO sing 178 n n C2A H39 EFO sing 179 n n C2A H40 EFO sing 180 n n C2A H41 EFO sing 181 n n C22 H42 EFO sing 182 n n C22 H43 EFO sing 183 n n C21 H44 EFO sing 184 n n C20 H45 EFO sing 185 n n C19 H46 EFO sing 186 n n C18 H47 EFO sing 187 n n C17 H48 EFO sing 188 n n C1C H49 EFO sing 189 n n C1C H50 EFO sing 190 n n C1D H51 EFO sing 191 n n C1D H52 EFO sing 192 n n C1D H53 EFO sing 193 n n C16 H54 EFO sing 194 n n C16 H55 EFO sing 195 n n C15 H56 EFO sing 196 n n C15 H57 EFO sing 197 n n C13 H58 EFO sing 198 n n C7 H59 EFO sing 199 n n C7 H60 EFO sing 200 n n C6 H61 EFO sing 201 n n C6 H62 EFO sing 202 n n C5 H63 EFO sing 203 n n C51 H64 EFO sing 204 n n C51 H65 EFO sing 205 n n C51 H66 EFO sing 206 n n C4 H67 EFO sing 207 n n C3 H68 EFO sing 208 n n C3 H69 EFO sing 209 n n C2 H70 EFO sing 210 n n C1 H71 EFO sing 211 n n C1 H72 EFO sing 212 n n C1 H73 EFO sing 213 n n O2 H74 EFO sing 214 n n # _atom_sites.entry_id 4WQ0 _atom_sites.fract_transf_matrix[1][1] 0.007824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1 HEM HEI . C 3 EFO A 1 502 1 EFO EFO . D 4 HOH A 1 601 23 HOH HOH . D 4 HOH A 2 602 19 HOH HOH . D 4 HOH A 3 603 1 HOH HOH . D 4 HOH A 4 604 2 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 4 HOH HOH . D 4 HOH A 7 607 6 HOH HOH . D 4 HOH A 8 608 9 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 12 HOH HOH . D 4 HOH A 11 611 16 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 21 HOH HOH . D 4 HOH A 14 614 22 HOH HOH . D 4 HOH A 15 615 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A EFO . . . C 3 -23.942 -26.819 -4.8 1 129.82 ? C1A EFO 502 A 1 HETATM 2 C C10 EFO . . . C 3 -23.175 -27.959 -5.464 1 131.07 ? C10 EFO 502 A 1 HETATM 3 C C11 EFO . . . C 3 -24.013 -29.218 -5.301 1 121.49 ? C11 EFO 502 A 1 HETATM 4 C C12 EFO . . . C 3 -23.226 -30.328 -5.966 1 109.53 ? C12 EFO 502 A 1 HETATM 5 C C1B EFO . . . C 3 -21.942 -30.517 -5.184 1 101.8 ? C1B EFO 502 A 1 HETATM 6 O O37 EFO . . . C 3 -24.21 -29.508 -3.914 1 115.7 ? O37 EFO 502 A 1 HETATM 7 C C36 EFO . . . C 3 -25.457 -29.094 -3.267 1 102.77 ? C36 EFO 502 A 1 HETATM 8 O O36 EFO . . . C 3 -25.635 -27.931 -3.015 1 88.58 ? O36 EFO 502 A 1 HETATM 9 C C35 EFO . . . C 3 -26.42 -29.94 -2.882 1 103.55 ? C35 EFO 502 A 1 HETATM 10 C C34 EFO . . . C 3 -26.385 -31.256 -3.062 1 115.75 ? C34 EFO 502 A 1 HETATM 11 C C33 EFO . . . C 3 -27.555 -32.081 -2.585 1 118.43 ? C33 EFO 502 A 1 HETATM 12 C C3B EFO . . . C 3 -27.804 -31.733 -1.129 1 114.18 ? C3B EFO 502 A 1 HETATM 13 C C32 EFO . . . C 3 -27.294 -33.576 -2.682 1 123.54 ? C32 EFO 502 A 1 HETATM 14 O O32 EFO . . . C 3 -28.376 -34.255 -2.05 1 118.31 ? O32 EFO 502 A 1 HETATM 15 C C31 EFO . . . C 3 -27.187 -34.08 -4.108 1 121.98 ? C31 EFO 502 A 1 HETATM 16 C C3A EFO . . . C 3 -28.395 -33.659 -4.925 1 111.91 ? C3A EFO 502 A 1 HETATM 17 C C30 EFO . . . C 3 -27.1 -35.572 -4.036 1 123.26 ? C30 EFO 502 A 1 HETATM 18 O O30 EFO . . . C 3 -28.098 -36.245 -4.122 1 125.82 ? O30 EFO 502 A 1 HETATM 19 C C29 EFO . . . C 3 -25.78 -36.239 -3.831 1 118.31 ? C29 EFO 502 A 1 HETATM 20 C C2D EFO . . . C 3 -25.002 -35.394 -2.825 1 105.1 ? C2D EFO 502 A 1 HETATM 21 C C28 EFO . . . C 3 -25.061 -36.44 -5.166 1 124.72 ? C28 EFO 502 A 1 HETATM 22 O O28 EFO . . . C 3 -25.314 -35.351 -6.05 1 116.9 ? O28 EFO 502 A 1 HETATM 23 C C27 EFO . . . C 3 -23.557 -36.574 -4.98 1 128.66 ? C27 EFO 502 A 1 HETATM 24 C C2C EFO . . . C 3 -22.93 -35.205 -4.782 1 124.83 ? C2C EFO 502 A 1 HETATM 25 C C26 EFO . . . C 3 -22.919 -37.247 -6.149 1 131.41 ? C26 EFO 502 A 1 HETATM 26 O O26 EFO . . . C 3 -23.445 -37.22 -7.239 1 129.88 ? O26 EFO 502 A 1 HETATM 27 C C25 EFO . . . C 3 -21.614 -37.968 -5.962 1 125.49 ? C25 EFO 502 A 1 HETATM 28 C C2B EFO . . . C 3 -21.912 -39.22 -5.162 1 125.57 ? C2B EFO 502 A 1 HETATM 29 O O25 EFO . . . C 3 -20.698 -37.155 -5.227 1 116.24 ? O25 EFO 502 A 1 HETATM 30 C C24 EFO . . . C 3 -21.003 -38.38 -7.295 1 118.66 ? C24 EFO 502 A 1 HETATM 31 O O24 EFO . . . C 3 -21.423 -37.54 -8.375 1 101.04 ? O24 EFO 502 A 1 HETATM 32 C C23 EFO . . . C 3 -19.484 -38.502 -7.23 1 113.35 ? C23 EFO 502 A 1 HETATM 33 C C2A EFO . . . C 3 -19.136 -39.435 -6.085 1 112.91 ? C2A EFO 502 A 1 HETATM 34 C C22 EFO . . . C 3 -18.706 -37.211 -7.049 1 109.37 ? C22 EFO 502 A 1 HETATM 35 C C21 EFO . . . C 3 -19.201 -36.081 -7.899 1 109.08 ? C21 EFO 502 A 1 HETATM 36 C C20 EFO . . . C 3 -18.931 -34.861 -7.467 1 112.83 ? C20 EFO 502 A 1 HETATM 37 C C19 EFO . . . C 3 -19.318 -33.788 -8.133 1 116.89 ? C19 EFO 502 A 1 HETATM 38 C C18 EFO . . . C 3 -19.033 -32.572 -7.682 1 119.82 ? C18 EFO 502 A 1 HETATM 39 C C17 EFO . . . C 3 -19.495 -31.371 -8.471 1 125.24 ? C17 EFO 502 A 1 HETATM 40 C C1C EFO . . . C 3 -18.314 -30.469 -8.822 1 128.72 ? C1C EFO 502 A 1 HETATM 41 C C1D EFO . . . C 3 -17.763 -30.713 -10.214 1 119.31 ? C1D EFO 502 A 1 HETATM 42 C C16 EFO . . . C 3 -20.484 -30.592 -7.628 1 109.86 ? C16 EFO 502 A 1 HETATM 43 C C15 EFO . . . C 3 -21.876 -30.605 -8.237 1 106.16 ? C15 EFO 502 A 1 HETATM 44 C C13 EFO . . . C 3 -23.075 -30.023 -7.472 1 109.84 ? C13 EFO 502 A 1 HETATM 45 O O14 EFO . . . C 3 -23.246 -28.643 -7.824 1 106.01 ? O14 EFO 502 A 1 HETATM 46 C C8 EFO . . . C 3 -22.715 -27.691 -6.914 1 127.72 ? C8 EFO 502 A 1 HETATM 47 O O9 EFO . . . C 3 -23.176 -26.397 -7.352 1 124.75 ? O9 EFO 502 A 1 HETATM 48 C C7 EFO . . . C 3 -21.219 -27.889 -7.108 1 129.96 ? C7 EFO 502 A 1 HETATM 49 C C6 EFO . . . C 3 -20.886 -27.292 -8.486 1 133.09 ? C6 EFO 502 A 1 HETATM 50 C C5 EFO . . . C 3 -21.612 -26.011 -8.933 1 125.73 ? C5 EFO 502 A 1 HETATM 51 C C51 EFO . . . C 3 -20.678 -25.014 -9.585 1 133.98 ? C51 EFO 502 A 1 HETATM 52 C C4 EFO . . . C 3 -22.293 -25.356 -7.766 1 118.6 ? C4 EFO 502 A 1 HETATM 53 C C3 EFO . . . C 3 -21.206 -25.058 -6.737 1 107.97 ? C3 EFO 502 A 1 HETATM 54 C C2 EFO . . . C 3 -21.399 -25.651 -5.345 1 97.99 ? C2 EFO 502 A 1 HETATM 55 C C1 EFO . . . C 3 -20.2 -26.444 -4.866 1 85.87 ? C1 EFO 502 A 1 HETATM 56 O O2 EFO . . . C 3 -21.575 -24.601 -4.398 1 101.38 ? O2 EFO 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 56 #