data_4WQ0
#
_model_server_result.job_id            KSlauD0pBMCHcRwjCx-5Uw 
_model_server_result.datetime_utc      '2024-11-02 17:35:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wq0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4WQ0 
#
_exptl.entry_id    4WQ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              791.062 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Oligomycin A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WQ0 
_cell.length_a            127.812 
_cell.length_b            127.812 
_cell.length_c            76.584 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WQ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             346 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              353 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              501 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.087 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C45 H74 O11' 
_chem_comp.formula_weight    791.062 
_chem_comp.id                EFO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Oligomycin A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "(1R,4E,5'S,6S,6'S,7R,8S,10R,11R,12S,14R,15S,16R,18E,20E,22R,25S,27R,28S,29R)-22-ethyl-7,11,14,15-tetrahydroxy-6'-[(2R)-2-hydroxypropyl]-5',6,8,10,12,14,16,28,29-nonamethyl-3',4',5',6'-tetrahydro-3H,9H,13H-spiro[2,26-dioxabicyclo[23.3.1]nonacosa-4,18,20-triene-27,2'-pyran]-3,9,13-trione" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2A C23 EFO sing 83 n n 
C2B C25 EFO sing 84 n n 
O25 C25 EFO sing 85 n n 
C23 C22 EFO sing 86 n n 
C23 C24 EFO sing 87 n n 
C2D C29 EFO sing 88 n n 
C22 C21 EFO sing 89 n n 
C25 C24 EFO sing 90 n n 
C25 C26 EFO sing 91 n n 
C24 O24 EFO sing 92 n n 
C29 C30 EFO sing 93 n n 
C29 C28 EFO sing 94 n n 
C21 C20 EFO doub 95 e n 
O30 C30 EFO doub 96 n n 
C26 C27 EFO sing 97 n n 
C26 O26 EFO doub 98 n n 
C30 C31 EFO sing 99 n n 
C27 C28 EFO sing 100 n n 
C27 C2C EFO sing 101 n n 
C3A C31 EFO sing 102 n n 
C28 O28 EFO sing 103 n n 
C20 C19 EFO sing 104 n n 
C31 C32 EFO sing 105 n n 
O32 C32 EFO sing 106 n n 
C19 C18 EFO doub 107 e n 
C32 C33 EFO sing 108 n n 
C18 C17 EFO sing 109 n n 
C33 C34 EFO sing 110 n n 
C33 C3B EFO sing 111 n n 
C1B C12 EFO sing 112 n n 
C34 C35 EFO doub 113 e n 
C17 C1C EFO sing 114 n n 
C17 C16 EFO sing 115 n n 
C35 C36 EFO sing 116 n n 
C1D C1C EFO sing 117 n n 
C15 C16 EFO sing 118 n n 
C15 C13 EFO sing 119 n n 
C12 C13 EFO sing 120 n n 
C12 C11 EFO sing 121 n n 
C36 O36 EFO doub 122 n n 
C36 O37 EFO sing 123 n n 
O37 C11 EFO sing 124 n n 
C13 O14 EFO sing 125 n n 
C11 C10 EFO sing 126 n n 
O14 C8 EFO sing 127 n n 
C10 C8 EFO sing 128 n n 
C10 C1A EFO sing 129 n n 
C8 C7 EFO sing 130 n n 
C8 O9 EFO sing 131 n n 
O2 C2 EFO sing 132 n n 
C7 C6 EFO sing 133 n n 
O9 C4 EFO sing 134 n n 
C2 C1 EFO sing 135 n n 
C2 C3 EFO sing 136 n n 
C4 C3 EFO sing 137 n n 
C4 C5 EFO sing 138 n n 
C6 C5 EFO sing 139 n n 
C5 C51 EFO sing 140 n n 
C1A H1 EFO sing 141 n n 
C1A H2 EFO sing 142 n n 
C1A H3 EFO sing 143 n n 
C10 H4 EFO sing 144 n n 
C11 H5 EFO sing 145 n n 
C12 H6 EFO sing 146 n n 
C1B H7 EFO sing 147 n n 
C1B H8 EFO sing 148 n n 
C1B H9 EFO sing 149 n n 
C35 H10 EFO sing 150 n n 
C34 H11 EFO sing 151 n n 
C33 H12 EFO sing 152 n n 
C3B H13 EFO sing 153 n n 
C3B H14 EFO sing 154 n n 
C3B H15 EFO sing 155 n n 
C32 H16 EFO sing 156 n n 
O32 H17 EFO sing 157 n n 
C31 H18 EFO sing 158 n n 
C3A H19 EFO sing 159 n n 
C3A H20 EFO sing 160 n n 
C3A H21 EFO sing 161 n n 
C29 H22 EFO sing 162 n n 
C2D H23 EFO sing 163 n n 
C2D H24 EFO sing 164 n n 
C2D H25 EFO sing 165 n n 
C28 H26 EFO sing 166 n n 
O28 H27 EFO sing 167 n n 
C27 H28 EFO sing 168 n n 
C2C H29 EFO sing 169 n n 
C2C H30 EFO sing 170 n n 
C2C H31 EFO sing 171 n n 
C2B H32 EFO sing 172 n n 
C2B H33 EFO sing 173 n n 
C2B H34 EFO sing 174 n n 
O25 H35 EFO sing 175 n n 
C24 H36 EFO sing 176 n n 
O24 H37 EFO sing 177 n n 
C23 H38 EFO sing 178 n n 
C2A H39 EFO sing 179 n n 
C2A H40 EFO sing 180 n n 
C2A H41 EFO sing 181 n n 
C22 H42 EFO sing 182 n n 
C22 H43 EFO sing 183 n n 
C21 H44 EFO sing 184 n n 
C20 H45 EFO sing 185 n n 
C19 H46 EFO sing 186 n n 
C18 H47 EFO sing 187 n n 
C17 H48 EFO sing 188 n n 
C1C H49 EFO sing 189 n n 
C1C H50 EFO sing 190 n n 
C1D H51 EFO sing 191 n n 
C1D H52 EFO sing 192 n n 
C1D H53 EFO sing 193 n n 
C16 H54 EFO sing 194 n n 
C16 H55 EFO sing 195 n n 
C15 H56 EFO sing 196 n n 
C15 H57 EFO sing 197 n n 
C13 H58 EFO sing 198 n n 
C7 H59 EFO sing 199 n n 
C7 H60 EFO sing 200 n n 
C6 H61 EFO sing 201 n n 
C6 H62 EFO sing 202 n n 
C5 H63 EFO sing 203 n n 
C51 H64 EFO sing 204 n n 
C51 H65 EFO sing 205 n n 
C51 H66 EFO sing 206 n n 
C4 H67 EFO sing 207 n n 
C3 H68 EFO sing 208 n n 
C3 H69 EFO sing 209 n n 
C2 H70 EFO sing 210 n n 
C1 H71 EFO sing 211 n n 
C1 H72 EFO sing 212 n n 
C1 H73 EFO sing 213 n n 
O2 H74 EFO sing 214 n n 
#
_atom_sites.entry_id                     4WQ0 
_atom_sites.fract_transf_matrix[1][1]    0.007824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 1 HEM HEI . 
C 3 EFO A 1 502 1 EFO EFO . 
D 4 HOH A 1 601 23 HOH HOH . 
D 4 HOH A 2 602 19 HOH HOH . 
D 4 HOH A 3 603 1 HOH HOH . 
D 4 HOH A 4 604 2 HOH HOH . 
D 4 HOH A 5 605 3 HOH HOH . 
D 4 HOH A 6 606 4 HOH HOH . 
D 4 HOH A 7 607 6 HOH HOH . 
D 4 HOH A 8 608 9 HOH HOH . 
D 4 HOH A 9 609 11 HOH HOH . 
D 4 HOH A 10 610 12 HOH HOH . 
D 4 HOH A 11 611 16 HOH HOH . 
D 4 HOH A 12 612 20 HOH HOH . 
D 4 HOH A 13 613 21 HOH HOH . 
D 4 HOH A 14 614 22 HOH HOH . 
D 4 HOH A 15 615 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A EFO . . . C 3 -23.942 -26.819 -4.8 1 129.82 ? C1A EFO 502 A 1 
HETATM 2 C C10 EFO . . . C 3 -23.175 -27.959 -5.464 1 131.07 ? C10 EFO 502 A 1 
HETATM 3 C C11 EFO . . . C 3 -24.013 -29.218 -5.301 1 121.49 ? C11 EFO 502 A 1 
HETATM 4 C C12 EFO . . . C 3 -23.226 -30.328 -5.966 1 109.53 ? C12 EFO 502 A 1 
HETATM 5 C C1B EFO . . . C 3 -21.942 -30.517 -5.184 1 101.8 ? C1B EFO 502 A 1 
HETATM 6 O O37 EFO . . . C 3 -24.21 -29.508 -3.914 1 115.7 ? O37 EFO 502 A 1 
HETATM 7 C C36 EFO . . . C 3 -25.457 -29.094 -3.267 1 102.77 ? C36 EFO 502 A 1 
HETATM 8 O O36 EFO . . . C 3 -25.635 -27.931 -3.015 1 88.58 ? O36 EFO 502 A 1 
HETATM 9 C C35 EFO . . . C 3 -26.42 -29.94 -2.882 1 103.55 ? C35 EFO 502 A 1 
HETATM 10 C C34 EFO . . . C 3 -26.385 -31.256 -3.062 1 115.75 ? C34 EFO 502 A 1 
HETATM 11 C C33 EFO . . . C 3 -27.555 -32.081 -2.585 1 118.43 ? C33 EFO 502 A 1 
HETATM 12 C C3B EFO . . . C 3 -27.804 -31.733 -1.129 1 114.18 ? C3B EFO 502 A 1 
HETATM 13 C C32 EFO . . . C 3 -27.294 -33.576 -2.682 1 123.54 ? C32 EFO 502 A 1 
HETATM 14 O O32 EFO . . . C 3 -28.376 -34.255 -2.05 1 118.31 ? O32 EFO 502 A 1 
HETATM 15 C C31 EFO . . . C 3 -27.187 -34.08 -4.108 1 121.98 ? C31 EFO 502 A 1 
HETATM 16 C C3A EFO . . . C 3 -28.395 -33.659 -4.925 1 111.91 ? C3A EFO 502 A 1 
HETATM 17 C C30 EFO . . . C 3 -27.1 -35.572 -4.036 1 123.26 ? C30 EFO 502 A 1 
HETATM 18 O O30 EFO . . . C 3 -28.098 -36.245 -4.122 1 125.82 ? O30 EFO 502 A 1 
HETATM 19 C C29 EFO . . . C 3 -25.78 -36.239 -3.831 1 118.31 ? C29 EFO 502 A 1 
HETATM 20 C C2D EFO . . . C 3 -25.002 -35.394 -2.825 1 105.1 ? C2D EFO 502 A 1 
HETATM 21 C C28 EFO . . . C 3 -25.061 -36.44 -5.166 1 124.72 ? C28 EFO 502 A 1 
HETATM 22 O O28 EFO . . . C 3 -25.314 -35.351 -6.05 1 116.9 ? O28 EFO 502 A 1 
HETATM 23 C C27 EFO . . . C 3 -23.557 -36.574 -4.98 1 128.66 ? C27 EFO 502 A 1 
HETATM 24 C C2C EFO . . . C 3 -22.93 -35.205 -4.782 1 124.83 ? C2C EFO 502 A 1 
HETATM 25 C C26 EFO . . . C 3 -22.919 -37.247 -6.149 1 131.41 ? C26 EFO 502 A 1 
HETATM 26 O O26 EFO . . . C 3 -23.445 -37.22 -7.239 1 129.88 ? O26 EFO 502 A 1 
HETATM 27 C C25 EFO . . . C 3 -21.614 -37.968 -5.962 1 125.49 ? C25 EFO 502 A 1 
HETATM 28 C C2B EFO . . . C 3 -21.912 -39.22 -5.162 1 125.57 ? C2B EFO 502 A 1 
HETATM 29 O O25 EFO . . . C 3 -20.698 -37.155 -5.227 1 116.24 ? O25 EFO 502 A 1 
HETATM 30 C C24 EFO . . . C 3 -21.003 -38.38 -7.295 1 118.66 ? C24 EFO 502 A 1 
HETATM 31 O O24 EFO . . . C 3 -21.423 -37.54 -8.375 1 101.04 ? O24 EFO 502 A 1 
HETATM 32 C C23 EFO . . . C 3 -19.484 -38.502 -7.23 1 113.35 ? C23 EFO 502 A 1 
HETATM 33 C C2A EFO . . . C 3 -19.136 -39.435 -6.085 1 112.91 ? C2A EFO 502 A 1 
HETATM 34 C C22 EFO . . . C 3 -18.706 -37.211 -7.049 1 109.37 ? C22 EFO 502 A 1 
HETATM 35 C C21 EFO . . . C 3 -19.201 -36.081 -7.899 1 109.08 ? C21 EFO 502 A 1 
HETATM 36 C C20 EFO . . . C 3 -18.931 -34.861 -7.467 1 112.83 ? C20 EFO 502 A 1 
HETATM 37 C C19 EFO . . . C 3 -19.318 -33.788 -8.133 1 116.89 ? C19 EFO 502 A 1 
HETATM 38 C C18 EFO . . . C 3 -19.033 -32.572 -7.682 1 119.82 ? C18 EFO 502 A 1 
HETATM 39 C C17 EFO . . . C 3 -19.495 -31.371 -8.471 1 125.24 ? C17 EFO 502 A 1 
HETATM 40 C C1C EFO . . . C 3 -18.314 -30.469 -8.822 1 128.72 ? C1C EFO 502 A 1 
HETATM 41 C C1D EFO . . . C 3 -17.763 -30.713 -10.214 1 119.31 ? C1D EFO 502 A 1 
HETATM 42 C C16 EFO . . . C 3 -20.484 -30.592 -7.628 1 109.86 ? C16 EFO 502 A 1 
HETATM 43 C C15 EFO . . . C 3 -21.876 -30.605 -8.237 1 106.16 ? C15 EFO 502 A 1 
HETATM 44 C C13 EFO . . . C 3 -23.075 -30.023 -7.472 1 109.84 ? C13 EFO 502 A 1 
HETATM 45 O O14 EFO . . . C 3 -23.246 -28.643 -7.824 1 106.01 ? O14 EFO 502 A 1 
HETATM 46 C C8 EFO . . . C 3 -22.715 -27.691 -6.914 1 127.72 ? C8 EFO 502 A 1 
HETATM 47 O O9 EFO . . . C 3 -23.176 -26.397 -7.352 1 124.75 ? O9 EFO 502 A 1 
HETATM 48 C C7 EFO . . . C 3 -21.219 -27.889 -7.108 1 129.96 ? C7 EFO 502 A 1 
HETATM 49 C C6 EFO . . . C 3 -20.886 -27.292 -8.486 1 133.09 ? C6 EFO 502 A 1 
HETATM 50 C C5 EFO . . . C 3 -21.612 -26.011 -8.933 1 125.73 ? C5 EFO 502 A 1 
HETATM 51 C C51 EFO . . . C 3 -20.678 -25.014 -9.585 1 133.98 ? C51 EFO 502 A 1 
HETATM 52 C C4 EFO . . . C 3 -22.293 -25.356 -7.766 1 118.6 ? C4 EFO 502 A 1 
HETATM 53 C C3 EFO . . . C 3 -21.206 -25.058 -6.737 1 107.97 ? C3 EFO 502 A 1 
HETATM 54 C C2 EFO . . . C 3 -21.399 -25.651 -5.345 1 97.99 ? C2 EFO 502 A 1 
HETATM 55 C C1 EFO . . . C 3 -20.2 -26.444 -4.866 1 85.87 ? C1 EFO 502 A 1 
HETATM 56 O O2 EFO . . . C 3 -21.575 -24.601 -4.398 1 101.38 ? O2 EFO 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           56 
#