data_4WQ5
#
_model_server_result.job_id            ZpidV1BC7tCG9IZm3d04Mg 
_model_server_result.datetime_utc      '2024-11-04 22:48:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":403}' 
#
_entry.id    4WQ5 
#
_exptl.entry_id    4WQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109.31 
_cell.angle_beta          92.56 
_cell.angle_gamma         117.94 
_cell.entry_id            4WQ5 
_cell.length_a            63.69 
_cell.length_b            68.08 
_cell.length_c            87.34 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,R,S,T,W 1 1 
B,C,L,M,N,O,P,Q,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 13 C CYS 13 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf2 D SG CYS 13 D CYS 13 1_555 D SG CYS 30 D CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A OD1 ASP 11 A ASP 11 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc2 A OE1 GLU 12 A GLU 12 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc3 A NE2 HIS 111 A HIS 111 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 A NE2 HIS 115 A HIS 115 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc5 A OD1 ASP 300 A ASP 300 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc6 A OD2 ASP 300 A ASP 300 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? 
metalc ? metalc7 B OD1 ASP 11 B ASP 11 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc8 B NE2 HIS 111 B HIS 111 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc9 B NE2 HIS 115 B HIS 115 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc10 B OD1 ASP 300 B ASP 300 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc11 B OD2 ASP 300 B ASP 300 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc12 E MG MG . A MG 401 1_555 G O2B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc13 F FE FE . A FE 402 1_555 G O2B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc14 F FE FE . A FE 402 1_555 G O3B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc15 L MG MG . B MG 401 1_555 N O1B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc16 L MG MG . B MG 401 1_555 U O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? 
metalc ? metalc17 M FE FE . B FE 402 1_555 N O1B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc18 M FE FE . B FE 402 1_555 N O3B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4WQ5 
_atom_sites.fract_transf_matrix[1][1]    0.015701 
_atom_sites.fract_transf_matrix[1][2]    0.008328 
_atom_sites.fract_transf_matrix[1][3]    0.004382 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016627 
_atom_sites.fract_transf_matrix[2][3]    0.007221 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 401 338 MG MG . 
F 4 FE A 1 402 340 FE FE . 
G 5 ATP A 1 403 343 ATP ATP . 
H 6 ACT A 1 404 2 ACT ACT . 
I 6 ACT A 1 405 3 ACT ACT . 
J 6 ACT A 1 406 4 ACT ACT . 
K 6 ACT A 1 407 5 ACT ACT . 
L 3 MG B 1 401 338 MG MG . 
M 4 FE B 1 402 340 FE FE . 
N 5 ATP B 1 403 343 ATP ATP . 
O 6 ACT B 1 404 6 ACT ACT . 
P 6 ACT C 1 301 7 ACT ACT . 
Q 7 GOL C 1 302 9 GOL GOL . 
R 6 ACT D 1 301 1 ACT ACT . 
S 6 ACT D 1 302 8 ACT ACT . 
T 8 HOH A 1 501 44 HOH HOH . 
T 8 HOH A 2 502 62 HOH HOH . 
T 8 HOH A 3 503 83 HOH HOH . 
T 8 HOH A 4 504 102 HOH HOH . 
T 8 HOH A 5 505 29 HOH HOH . 
T 8 HOH A 6 506 40 HOH HOH . 
T 8 HOH A 7 507 41 HOH HOH . 
T 8 HOH A 8 508 80 HOH HOH . 
T 8 HOH A 9 509 43 HOH HOH . 
T 8 HOH A 10 510 115 HOH HOH . 
T 8 HOH A 11 511 1 HOH HOH . 
T 8 HOH A 12 512 13 HOH HOH . 
T 8 HOH A 13 513 14 HOH HOH . 
T 8 HOH A 14 514 15 HOH HOH . 
T 8 HOH A 15 515 16 HOH HOH . 
T 8 HOH A 16 516 42 HOH HOH . 
T 8 HOH A 17 517 47 HOH HOH . 
T 8 HOH A 18 518 49 HOH HOH . 
T 8 HOH A 19 519 50 HOH HOH . 
T 8 HOH A 20 520 54 HOH HOH . 
T 8 HOH A 21 521 55 HOH HOH . 
T 8 HOH A 22 522 59 HOH HOH . 
T 8 HOH A 23 523 60 HOH HOH . 
T 8 HOH A 24 524 61 HOH HOH . 
T 8 HOH A 25 525 67 HOH HOH . 
T 8 HOH A 26 526 71 HOH HOH . 
T 8 HOH A 27 527 72 HOH HOH . 
T 8 HOH A 28 528 75 HOH HOH . 
T 8 HOH A 29 529 76 HOH HOH . 
T 8 HOH A 30 530 78 HOH HOH . 
T 8 HOH A 31 531 79 HOH HOH . 
T 8 HOH A 32 532 81 HOH HOH . 
T 8 HOH A 33 533 84 HOH HOH . 
T 8 HOH A 34 534 85 HOH HOH . 
T 8 HOH A 35 535 91 HOH HOH . 
T 8 HOH A 36 536 94 HOH HOH . 
T 8 HOH A 37 537 109 HOH HOH . 
T 8 HOH A 38 538 110 HOH HOH . 
T 8 HOH A 39 539 113 HOH HOH . 
U 8 HOH B 1 501 30 HOH HOH . 
U 8 HOH B 2 502 77 HOH HOH . 
U 8 HOH B 3 503 10 HOH HOH . 
U 8 HOH B 4 504 11 HOH HOH . 
U 8 HOH B 5 505 12 HOH HOH . 
U 8 HOH B 6 506 19 HOH HOH . 
U 8 HOH B 7 507 23 HOH HOH . 
U 8 HOH B 8 508 28 HOH HOH . 
U 8 HOH B 9 509 32 HOH HOH . 
U 8 HOH B 10 510 33 HOH HOH . 
U 8 HOH B 11 511 34 HOH HOH . 
U 8 HOH B 12 512 45 HOH HOH . 
U 8 HOH B 13 513 52 HOH HOH . 
U 8 HOH B 14 514 53 HOH HOH . 
U 8 HOH B 15 515 58 HOH HOH . 
U 8 HOH B 16 516 86 HOH HOH . 
U 8 HOH B 17 517 87 HOH HOH . 
U 8 HOH B 18 518 88 HOH HOH . 
U 8 HOH B 19 519 89 HOH HOH . 
U 8 HOH B 20 520 90 HOH HOH . 
U 8 HOH B 21 521 96 HOH HOH . 
U 8 HOH B 22 522 111 HOH HOH . 
U 8 HOH B 23 523 116 HOH HOH . 
V 8 HOH C 1 401 2 HOH HOH . 
V 8 HOH C 2 402 17 HOH HOH . 
V 8 HOH C 3 403 18 HOH HOH . 
V 8 HOH C 4 404 20 HOH HOH . 
V 8 HOH C 5 405 21 HOH HOH . 
V 8 HOH C 6 406 22 HOH HOH . 
V 8 HOH C 7 407 35 HOH HOH . 
V 8 HOH C 8 408 36 HOH HOH . 
V 8 HOH C 9 409 37 HOH HOH . 
V 8 HOH C 10 410 38 HOH HOH . 
V 8 HOH C 11 411 39 HOH HOH . 
V 8 HOH C 12 412 68 HOH HOH . 
V 8 HOH C 13 413 70 HOH HOH . 
V 8 HOH C 14 414 95 HOH HOH . 
V 8 HOH C 15 415 97 HOH HOH . 
V 8 HOH C 16 416 99 HOH HOH . 
V 8 HOH C 17 417 101 HOH HOH . 
V 8 HOH C 18 418 104 HOH HOH . 
V 8 HOH C 19 419 107 HOH HOH . 
V 8 HOH C 20 420 112 HOH HOH . 
W 8 HOH D 1 401 63 HOH HOH . 
W 8 HOH D 2 402 69 HOH HOH . 
W 8 HOH D 3 403 105 HOH HOH . 
W 8 HOH D 4 404 3 HOH HOH . 
W 8 HOH D 5 405 4 HOH HOH . 
W 8 HOH D 6 406 5 HOH HOH . 
W 8 HOH D 7 407 6 HOH HOH . 
W 8 HOH D 8 408 7 HOH HOH . 
W 8 HOH D 9 409 8 HOH HOH . 
W 8 HOH D 10 410 9 HOH HOH . 
W 8 HOH D 11 411 24 HOH HOH . 
W 8 HOH D 12 412 25 HOH HOH . 
W 8 HOH D 13 413 26 HOH HOH . 
W 8 HOH D 14 414 27 HOH HOH . 
W 8 HOH D 15 415 46 HOH HOH . 
W 8 HOH D 16 416 48 HOH HOH . 
W 8 HOH D 17 417 51 HOH HOH . 
W 8 HOH D 18 418 56 HOH HOH . 
W 8 HOH D 19 419 57 HOH HOH . 
W 8 HOH D 20 420 65 HOH HOH . 
W 8 HOH D 21 421 66 HOH HOH . 
W 8 HOH D 22 422 73 HOH HOH . 
W 8 HOH D 23 423 74 HOH HOH . 
W 8 HOH D 24 424 82 HOH HOH . 
W 8 HOH D 25 425 92 HOH HOH . 
W 8 HOH D 26 426 93 HOH HOH . 
W 8 HOH D 27 427 98 HOH HOH . 
W 8 HOH D 28 428 100 HOH HOH . 
W 8 HOH D 29 429 103 HOH HOH . 
W 8 HOH D 30 430 106 HOH HOH . 
W 8 HOH D 31 431 108 HOH HOH . 
W 8 HOH D 32 432 114 HOH HOH . 
W 8 HOH D 33 433 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . N 5 -27.866 -50.015 43.049 1 47.14 ? PG ATP 403 B 1 
HETATM 2 O O1G ATP . . . N 5 -28.471 -50.291 41.685 1 57.34 ? O1G ATP 403 B 1 
HETATM 3 O O2G ATP . . . N 5 -28.148 -48.595 43.549 1 51.93 ? O2G ATP 403 B 1 
HETATM 4 O O3G ATP . . . N 5 -28.407 -51.007 44.025 1 55.74 ? O3G ATP 403 B 1 
HETATM 5 P PB ATP . . . N 5 -25.285 -48.875 42.791 1 47.76 ? PB ATP 403 B 1 
HETATM 6 O O1B ATP . . . N 5 -24.182 -49.239 41.807 1 56.12 ? O1B ATP 403 B 1 
HETATM 7 O O2B ATP . . . N 5 -26.088 -47.678 42.393 1 64.58 ? O2B ATP 403 B 1 
HETATM 8 O O3B ATP . . . N 5 -26.265 -50.182 43.004 1 55.15 ? O3B ATP 403 B 1 
HETATM 9 P PA ATP . . . N 5 -23.266 -48.988 44.814 1 35.75 ? PA ATP 403 B 1 
HETATM 10 O O1A ATP . . . N 5 -22.229 -48.686 43.742 1 38.25 ? O1A ATP 403 B 1 
HETATM 11 O O2A ATP . . . N 5 -23.386 -50.41 45.339 1 33.44 ? O2A ATP 403 B 1 
HETATM 12 O O3A ATP . . . N 5 -24.691 -48.436 44.275 1 58.58 ? O3A ATP 403 B 1 
HETATM 13 O O5' ATP . . . N 5 -22.95 -47.939 45.989 1 48.02 ? O5' ATP 403 B 1 
HETATM 14 C C5' ATP . . . N 5 -23.172 -46.557 45.708 1 42.35 ? C5' ATP 403 B 1 
HETATM 15 C C4' ATP . . . N 5 -23.692 -45.875 46.956 1 43.39 ? C4' ATP 403 B 1 
HETATM 16 O O4' ATP . . . N 5 -22.859 -46.163 48.106 1 42.97 ? O4' ATP 403 B 1 
HETATM 17 C C3' ATP . . . N 5 -23.814 -44.338 46.851 1 44.78 ? C3' ATP 403 B 1 
HETATM 18 O O3' ATP . . . N 5 -25.113 -43.87 47.341 1 40.27 ? O3' ATP 403 B 1 
HETATM 19 C C2' ATP . . . N 5 -22.583 -43.893 47.645 1 44.89 ? C2' ATP 403 B 1 
HETATM 20 O O2' ATP . . . N 5 -22.571 -42.568 48.143 1 45.89 ? O2' ATP 403 B 1 
HETATM 21 C C1' ATP . . . N 5 -22.59 -44.93 48.749 1 45.33 ? C1' ATP 403 B 1 
HETATM 22 N N9 ATP . . . N 5 -21.307 -45.029 49.409 1 43 ? N9 ATP 403 B 1 
HETATM 23 C C8 ATP . . . N 5 -20.141 -45.381 48.839 1 42.49 ? C8 ATP 403 B 1 
HETATM 24 N N7 ATP . . . N 5 -19.183 -45.354 49.77 1 41.63 ? N7 ATP 403 B 1 
HETATM 25 C C5 ATP . . . N 5 -19.754 -45.008 50.926 1 38.51 ? C5 ATP 403 B 1 
HETATM 26 C C6 ATP . . . N 5 -19.267 -44.805 52.281 1 40.39 ? C6 ATP 403 B 1 
HETATM 27 N N6 ATP . . . N 5 -17.931 -44.999 52.515 1 40.25 ? N6 ATP 403 B 1 
HETATM 28 N N1 ATP . . . N 5 -20.152 -44.452 53.256 1 36.52 ? N1 ATP 403 B 1 
HETATM 29 C C2 ATP . . . N 5 -21.47 -44.244 52.994 1 44.1 ? C2 ATP 403 B 1 
HETATM 30 N N3 ATP . . . N 5 -21.972 -44.418 51.746 1 40.43 ? N3 ATP 403 B 1 
HETATM 31 C C4 ATP . . . N 5 -21.169 -44.787 50.708 1 40.82 ? C4 ATP 403 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#