data_4WQ5 # _model_server_result.job_id YGgIJfSIrnXHh_GQLnkqJg _model_server_result.datetime_utc '2024-11-23 08:49:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":403}' # _entry.id 4WQ5 # _exptl.entry_id 4WQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.31 _cell.angle_beta 92.56 _cell.angle_gamma 117.94 _cell.entry_id 4WQ5 _cell.length_a 63.69 _cell.length_b 68.08 _cell.length_c 87.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,R,S,T,W 1 1 B,C,L,M,N,O,P,Q,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 13 C CYS 13 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 D SG CYS 13 D CYS 13 1_555 D SG CYS 30 D CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A OD1 ASP 11 A ASP 11 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc2 A OE1 GLU 12 A GLU 12 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc3 A NE2 HIS 111 A HIS 111 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 A NE2 HIS 115 A HIS 115 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 A OD2 ASP 300 A ASP 300 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc6 A OD1 ASP 300 A ASP 300 1_555 F FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc7 E MG MG . A MG 401 1_555 G O2B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc8 F FE FE . A FE 402 1_555 G O2B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 F FE FE . A FE 402 1_555 G O3B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc10 B OD1 ASP 11 B ASP 11 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc11 B NE2 HIS 111 B HIS 111 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 B NE2 HIS 115 B HIS 115 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 B OD2 ASP 300 B ASP 300 1_555 L MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc14 B OD1 ASP 300 B ASP 300 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc15 L MG MG . B MG 401 1_555 N O1B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc16 L MG MG . B MG 401 1_555 U O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc17 M FE FE . B FE 402 1_555 N O1B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc18 M FE FE . B FE 402 1_555 N O3B ATP . B ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 76 n n PG O2G ATP sing 77 n n PG O3G ATP sing 78 n n PG O3B ATP sing 79 n n O2G HOG2 ATP sing 80 n n O3G HOG3 ATP sing 81 n n PB O1B ATP doub 82 n n PB O2B ATP sing 83 n n PB O3B ATP sing 84 n n PB O3A ATP sing 85 n n O2B HOB2 ATP sing 86 n n PA O1A ATP doub 87 n n PA O2A ATP sing 88 n n PA O3A ATP sing 89 n n PA O5' ATP sing 90 n n O2A HOA2 ATP sing 91 n n O5' C5' ATP sing 92 n n C5' C4' ATP sing 93 n n C5' "H5'1" ATP sing 94 n n C5' "H5'2" ATP sing 95 n n C4' O4' ATP sing 96 n n C4' C3' ATP sing 97 n n C4' H4' ATP sing 98 n n O4' C1' ATP sing 99 n n C3' O3' ATP sing 100 n n C3' C2' ATP sing 101 n n C3' H3' ATP sing 102 n n O3' HO3' ATP sing 103 n n C2' O2' ATP sing 104 n n C2' C1' ATP sing 105 n n C2' H2' ATP sing 106 n n O2' HO2' ATP sing 107 n n C1' N9 ATP sing 108 n n C1' H1' ATP sing 109 n n N9 C8 ATP sing 110 n y N9 C4 ATP sing 111 n y C8 N7 ATP doub 112 n y C8 H8 ATP sing 113 n n N7 C5 ATP sing 114 n y C5 C6 ATP sing 115 n y C5 C4 ATP doub 116 n y C6 N6 ATP sing 117 n n C6 N1 ATP doub 118 n y N6 HN61 ATP sing 119 n n N6 HN62 ATP sing 120 n n N1 C2 ATP sing 121 n y C2 N3 ATP doub 122 n y C2 H2 ATP sing 123 n n N3 C4 ATP sing 124 n y # _atom_sites.entry_id 4WQ5 _atom_sites.fract_transf_matrix[1][1] 0.015701 _atom_sites.fract_transf_matrix[1][2] 0.008328 _atom_sites.fract_transf_matrix[1][3] 0.004382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016627 _atom_sites.fract_transf_matrix[2][3] 0.007221 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 401 338 MG MG . F 4 FE A 1 402 340 FE FE . G 5 ATP A 1 403 343 ATP ATP . H 6 ACT A 1 404 2 ACT ACT . I 6 ACT A 1 405 3 ACT ACT . J 6 ACT A 1 406 4 ACT ACT . K 6 ACT A 1 407 5 ACT ACT . L 3 MG B 1 401 338 MG MG . M 4 FE B 1 402 340 FE FE . N 5 ATP B 1 403 343 ATP ATP . O 6 ACT B 1 404 6 ACT ACT . P 6 ACT C 1 301 7 ACT ACT . Q 7 GOL C 1 302 9 GOL GOL . R 6 ACT D 1 301 1 ACT ACT . S 6 ACT D 1 302 8 ACT ACT . T 8 HOH A 1 501 44 HOH HOH . T 8 HOH A 2 502 62 HOH HOH . T 8 HOH A 3 503 83 HOH HOH . T 8 HOH A 4 504 102 HOH HOH . T 8 HOH A 5 505 29 HOH HOH . T 8 HOH A 6 506 40 HOH HOH . T 8 HOH A 7 507 41 HOH HOH . T 8 HOH A 8 508 80 HOH HOH . T 8 HOH A 9 509 43 HOH HOH . T 8 HOH A 10 510 115 HOH HOH . T 8 HOH A 11 511 1 HOH HOH . T 8 HOH A 12 512 13 HOH HOH . T 8 HOH A 13 513 14 HOH HOH . T 8 HOH A 14 514 15 HOH HOH . T 8 HOH A 15 515 16 HOH HOH . T 8 HOH A 16 516 42 HOH HOH . T 8 HOH A 17 517 47 HOH HOH . T 8 HOH A 18 518 49 HOH HOH . T 8 HOH A 19 519 50 HOH HOH . T 8 HOH A 20 520 54 HOH HOH . T 8 HOH A 21 521 55 HOH HOH . T 8 HOH A 22 522 59 HOH HOH . T 8 HOH A 23 523 60 HOH HOH . T 8 HOH A 24 524 61 HOH HOH . T 8 HOH A 25 525 67 HOH HOH . T 8 HOH A 26 526 71 HOH HOH . T 8 HOH A 27 527 72 HOH HOH . T 8 HOH A 28 528 75 HOH HOH . T 8 HOH A 29 529 76 HOH HOH . T 8 HOH A 30 530 78 HOH HOH . T 8 HOH A 31 531 79 HOH HOH . T 8 HOH A 32 532 81 HOH HOH . T 8 HOH A 33 533 84 HOH HOH . T 8 HOH A 34 534 85 HOH HOH . T 8 HOH A 35 535 91 HOH HOH . T 8 HOH A 36 536 94 HOH HOH . T 8 HOH A 37 537 109 HOH HOH . T 8 HOH A 38 538 110 HOH HOH . T 8 HOH A 39 539 113 HOH HOH . U 8 HOH B 1 501 30 HOH HOH . U 8 HOH B 2 502 77 HOH HOH . U 8 HOH B 3 503 10 HOH HOH . U 8 HOH B 4 504 11 HOH HOH . U 8 HOH B 5 505 12 HOH HOH . U 8 HOH B 6 506 19 HOH HOH . U 8 HOH B 7 507 23 HOH HOH . U 8 HOH B 8 508 28 HOH HOH . U 8 HOH B 9 509 32 HOH HOH . U 8 HOH B 10 510 33 HOH HOH . U 8 HOH B 11 511 34 HOH HOH . U 8 HOH B 12 512 45 HOH HOH . U 8 HOH B 13 513 52 HOH HOH . U 8 HOH B 14 514 53 HOH HOH . U 8 HOH B 15 515 58 HOH HOH . U 8 HOH B 16 516 86 HOH HOH . U 8 HOH B 17 517 87 HOH HOH . U 8 HOH B 18 518 88 HOH HOH . U 8 HOH B 19 519 89 HOH HOH . U 8 HOH B 20 520 90 HOH HOH . U 8 HOH B 21 521 96 HOH HOH . U 8 HOH B 22 522 111 HOH HOH . U 8 HOH B 23 523 116 HOH HOH . V 8 HOH C 1 401 2 HOH HOH . V 8 HOH C 2 402 17 HOH HOH . V 8 HOH C 3 403 18 HOH HOH . V 8 HOH C 4 404 20 HOH HOH . V 8 HOH C 5 405 21 HOH HOH . V 8 HOH C 6 406 22 HOH HOH . V 8 HOH C 7 407 35 HOH HOH . V 8 HOH C 8 408 36 HOH HOH . V 8 HOH C 9 409 37 HOH HOH . V 8 HOH C 10 410 38 HOH HOH . V 8 HOH C 11 411 39 HOH HOH . V 8 HOH C 12 412 68 HOH HOH . V 8 HOH C 13 413 70 HOH HOH . V 8 HOH C 14 414 95 HOH HOH . V 8 HOH C 15 415 97 HOH HOH . V 8 HOH C 16 416 99 HOH HOH . V 8 HOH C 17 417 101 HOH HOH . V 8 HOH C 18 418 104 HOH HOH . V 8 HOH C 19 419 107 HOH HOH . V 8 HOH C 20 420 112 HOH HOH . W 8 HOH D 1 401 63 HOH HOH . W 8 HOH D 2 402 69 HOH HOH . W 8 HOH D 3 403 105 HOH HOH . W 8 HOH D 4 404 3 HOH HOH . W 8 HOH D 5 405 4 HOH HOH . W 8 HOH D 6 406 5 HOH HOH . W 8 HOH D 7 407 6 HOH HOH . W 8 HOH D 8 408 7 HOH HOH . W 8 HOH D 9 409 8 HOH HOH . W 8 HOH D 10 410 9 HOH HOH . W 8 HOH D 11 411 24 HOH HOH . W 8 HOH D 12 412 25 HOH HOH . W 8 HOH D 13 413 26 HOH HOH . W 8 HOH D 14 414 27 HOH HOH . W 8 HOH D 15 415 46 HOH HOH . W 8 HOH D 16 416 48 HOH HOH . W 8 HOH D 17 417 51 HOH HOH . W 8 HOH D 18 418 56 HOH HOH . W 8 HOH D 19 419 57 HOH HOH . W 8 HOH D 20 420 65 HOH HOH . W 8 HOH D 21 421 66 HOH HOH . W 8 HOH D 22 422 73 HOH HOH . W 8 HOH D 23 423 74 HOH HOH . W 8 HOH D 24 424 82 HOH HOH . W 8 HOH D 25 425 92 HOH HOH . W 8 HOH D 26 426 93 HOH HOH . W 8 HOH D 27 427 98 HOH HOH . W 8 HOH D 28 428 100 HOH HOH . W 8 HOH D 29 429 103 HOH HOH . W 8 HOH D 30 430 106 HOH HOH . W 8 HOH D 31 431 108 HOH HOH . W 8 HOH D 32 432 114 HOH HOH . W 8 HOH D 33 433 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 5 -27.866 -50.015 43.049 1 47.14 ? PG ATP 403 B 1 HETATM 2 O O1G ATP . . . N 5 -28.471 -50.291 41.685 1 57.34 ? O1G ATP 403 B 1 HETATM 3 O O2G ATP . . . N 5 -28.148 -48.595 43.549 1 51.93 ? O2G ATP 403 B 1 HETATM 4 O O3G ATP . . . N 5 -28.407 -51.007 44.025 1 55.74 ? O3G ATP 403 B 1 HETATM 5 P PB ATP . . . N 5 -25.285 -48.875 42.791 1 47.76 ? PB ATP 403 B 1 HETATM 6 O O1B ATP . . . N 5 -24.182 -49.239 41.807 1 56.12 ? O1B ATP 403 B 1 HETATM 7 O O2B ATP . . . N 5 -26.088 -47.678 42.393 1 64.58 ? O2B ATP 403 B 1 HETATM 8 O O3B ATP . . . N 5 -26.265 -50.182 43.004 1 55.15 ? O3B ATP 403 B 1 HETATM 9 P PA ATP . . . N 5 -23.266 -48.988 44.814 1 35.75 ? PA ATP 403 B 1 HETATM 10 O O1A ATP . . . N 5 -22.229 -48.686 43.742 1 38.25 ? O1A ATP 403 B 1 HETATM 11 O O2A ATP . . . N 5 -23.386 -50.41 45.339 1 33.44 ? O2A ATP 403 B 1 HETATM 12 O O3A ATP . . . N 5 -24.691 -48.436 44.275 1 58.58 ? O3A ATP 403 B 1 HETATM 13 O O5' ATP . . . N 5 -22.95 -47.939 45.989 1 48.02 ? O5' ATP 403 B 1 HETATM 14 C C5' ATP . . . N 5 -23.172 -46.557 45.708 1 42.35 ? C5' ATP 403 B 1 HETATM 15 C C4' ATP . . . N 5 -23.692 -45.875 46.956 1 43.39 ? C4' ATP 403 B 1 HETATM 16 O O4' ATP . . . N 5 -22.859 -46.163 48.106 1 42.97 ? O4' ATP 403 B 1 HETATM 17 C C3' ATP . . . N 5 -23.814 -44.338 46.851 1 44.78 ? C3' ATP 403 B 1 HETATM 18 O O3' ATP . . . N 5 -25.113 -43.87 47.341 1 40.27 ? O3' ATP 403 B 1 HETATM 19 C C2' ATP . . . N 5 -22.583 -43.893 47.645 1 44.89 ? C2' ATP 403 B 1 HETATM 20 O O2' ATP . . . N 5 -22.571 -42.568 48.143 1 45.89 ? O2' ATP 403 B 1 HETATM 21 C C1' ATP . . . N 5 -22.59 -44.93 48.749 1 45.33 ? C1' ATP 403 B 1 HETATM 22 N N9 ATP . . . N 5 -21.307 -45.029 49.409 1 43 ? N9 ATP 403 B 1 HETATM 23 C C8 ATP . . . N 5 -20.141 -45.381 48.839 1 42.49 ? C8 ATP 403 B 1 HETATM 24 N N7 ATP . . . N 5 -19.183 -45.354 49.77 1 41.63 ? N7 ATP 403 B 1 HETATM 25 C C5 ATP . . . N 5 -19.754 -45.008 50.926 1 38.51 ? C5 ATP 403 B 1 HETATM 26 C C6 ATP . . . N 5 -19.267 -44.805 52.281 1 40.39 ? C6 ATP 403 B 1 HETATM 27 N N6 ATP . . . N 5 -17.931 -44.999 52.515 1 40.25 ? N6 ATP 403 B 1 HETATM 28 N N1 ATP . . . N 5 -20.152 -44.452 53.256 1 36.52 ? N1 ATP 403 B 1 HETATM 29 C C2 ATP . . . N 5 -21.47 -44.244 52.994 1 44.1 ? C2 ATP 403 B 1 HETATM 30 N N3 ATP . . . N 5 -21.972 -44.418 51.746 1 40.43 ? N3 ATP 403 B 1 HETATM 31 C C4 ATP . . . N 5 -21.169 -44.787 50.708 1 40.82 ? C4 ATP 403 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #