data_4WQ9 # _model_server_result.job_id qlnsD5f1VXWUpnEDCmDqmg _model_server_result.datetime_utc '2024-12-21 17:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 4WQ9 # _exptl.entry_id 4WQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.128 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THIOSULFATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.42 _cell.angle_gamma 90 _cell.entry_id 4WQ9 _cell.length_a 79.289 _cell.length_b 69.864 _cell.length_c 57.805 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 49 A CYS 49 1_555 B CAB HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? covale ? covale2 A SG CYS 52 A CYS 52 1_555 B CAC HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? covale ? covale3 A C ASP 95 A ASP 95 1_555 A N CSD 96 A CSD 96 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C CSD 96 A CSD 96 1_555 A N PHE 97 A PHE 97 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A SG CYS 160 A CYS 160 1_555 C CAB HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 53 A HIS 53 1_555 B FE HEC . A HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A NE2 HIS 164 A HIS 164 1_555 C FE HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A SD MET 209 A MET 209 1_555 C FE HEC . A HEC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 B FE HEC . A HEC 1001 1_555 G S H2S . A H2S 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'O3 S2 -2' _chem_comp.formula_weight 112.128 _chem_comp.id THJ _chem_comp.mon_nstd_flag . _chem_comp.name THIOSULFATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O1 THJ doub 404 n n S1 O2 THJ doub 405 n n S1 O3 THJ sing 406 n n S1 S2 THJ sing 407 n n # _atom_sites.entry_id 4WQ9 _atom_sites.fract_transf_matrix[1][1] 0.012612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 1001 1001 HEC HEC . C 2 HEC A 1 1002 1002 HEC HEC . D 3 IOD A 1 1003 2001 IOD IOD . E 4 SO4 A 1 1004 4001 SO4 SO4 . F 5 EDO A 1 1005 7001 EDO EDO . G 6 H2S A 1 1006 8001 H2S H2S . H 7 THJ A 1 1007 9001 THJ THJ . I 3 IOD A 1 1008 1 IOD IOD . J 8 HOH A 1 1101 191 HOH HOH . J 8 HOH A 2 1102 188 HOH HOH . J 8 HOH A 3 1103 168 HOH HOH . J 8 HOH A 4 1104 175 HOH HOH . J 8 HOH A 5 1105 125 HOH HOH . J 8 HOH A 6 1106 230 HOH HOH . J 8 HOH A 7 1107 234 HOH HOH . J 8 HOH A 8 1108 76 HOH HOH . J 8 HOH A 9 1109 60 HOH HOH . J 8 HOH A 10 1110 95 HOH HOH . J 8 HOH A 11 1111 229 HOH HOH . J 8 HOH A 12 1112 94 HOH HOH . J 8 HOH A 13 1113 154 HOH HOH . J 8 HOH A 14 1114 172 HOH HOH . J 8 HOH A 15 1115 41 HOH HOH . J 8 HOH A 16 1116 91 HOH HOH . J 8 HOH A 17 1117 170 HOH HOH . J 8 HOH A 18 1118 40 HOH HOH . J 8 HOH A 19 1119 147 HOH HOH . J 8 HOH A 20 1120 215 HOH HOH . J 8 HOH A 21 1121 155 HOH HOH . J 8 HOH A 22 1122 55 HOH HOH . J 8 HOH A 23 1123 162 HOH HOH . J 8 HOH A 24 1124 126 HOH HOH . J 8 HOH A 25 1125 151 HOH HOH . J 8 HOH A 26 1126 156 HOH HOH . J 8 HOH A 27 1127 160 HOH HOH . J 8 HOH A 28 1128 44 HOH HOH . J 8 HOH A 29 1129 182 HOH HOH . J 8 HOH A 30 1130 96 HOH HOH . J 8 HOH A 31 1131 232 HOH HOH . J 8 HOH A 32 1132 85 HOH HOH . J 8 HOH A 33 1133 1 HOH HOH . J 8 HOH A 34 1134 39 HOH HOH . J 8 HOH A 35 1135 32 HOH HOH . J 8 HOH A 36 1136 127 HOH HOH . J 8 HOH A 37 1137 152 HOH HOH . J 8 HOH A 38 1138 26 HOH HOH . J 8 HOH A 39 1139 6 HOH HOH . J 8 HOH A 40 1140 121 HOH HOH . J 8 HOH A 41 1141 2 HOH HOH . J 8 HOH A 42 1142 46 HOH HOH . J 8 HOH A 43 1143 100 HOH HOH . J 8 HOH A 44 1144 93 HOH HOH . J 8 HOH A 45 1145 158 HOH HOH . J 8 HOH A 46 1146 117 HOH HOH . J 8 HOH A 47 1147 72 HOH HOH . J 8 HOH A 48 1148 115 HOH HOH . J 8 HOH A 49 1149 167 HOH HOH . J 8 HOH A 50 1150 18 HOH HOH . J 8 HOH A 51 1151 213 HOH HOH . J 8 HOH A 52 1152 148 HOH HOH . J 8 HOH A 53 1153 23 HOH HOH . J 8 HOH A 54 1154 63 HOH HOH . J 8 HOH A 55 1155 37 HOH HOH . J 8 HOH A 56 1156 24 HOH HOH . J 8 HOH A 57 1157 110 HOH HOH . J 8 HOH A 58 1158 231 HOH HOH . J 8 HOH A 59 1159 7 HOH HOH . J 8 HOH A 60 1160 8 HOH HOH . J 8 HOH A 61 1161 3 HOH HOH . J 8 HOH A 62 1162 143 HOH HOH . J 8 HOH A 63 1163 142 HOH HOH . J 8 HOH A 64 1164 47 HOH HOH . J 8 HOH A 65 1165 97 HOH HOH . J 8 HOH A 66 1166 53 HOH HOH . J 8 HOH A 67 1167 163 HOH HOH . J 8 HOH A 68 1168 43 HOH HOH . J 8 HOH A 69 1169 169 HOH HOH . J 8 HOH A 70 1170 139 HOH HOH . J 8 HOH A 71 1171 14 HOH HOH . J 8 HOH A 72 1172 108 HOH HOH . J 8 HOH A 73 1173 51 HOH HOH . J 8 HOH A 74 1174 20 HOH HOH . J 8 HOH A 75 1175 27 HOH HOH . J 8 HOH A 76 1176 185 HOH HOH . J 8 HOH A 77 1177 92 HOH HOH . J 8 HOH A 78 1178 227 HOH HOH . J 8 HOH A 79 1179 21 HOH HOH . J 8 HOH A 80 1180 103 HOH HOH . J 8 HOH A 81 1181 179 HOH HOH . J 8 HOH A 82 1182 65 HOH HOH . J 8 HOH A 83 1183 57 HOH HOH . J 8 HOH A 84 1184 205 HOH HOH . J 8 HOH A 85 1185 198 HOH HOH . J 8 HOH A 86 1186 36 HOH HOH . J 8 HOH A 87 1187 29 HOH HOH . J 8 HOH A 88 1188 89 HOH HOH . J 8 HOH A 89 1189 5 HOH HOH . J 8 HOH A 90 1190 61 HOH HOH . J 8 HOH A 91 1191 22 HOH HOH . J 8 HOH A 92 1192 166 HOH HOH . J 8 HOH A 93 1193 171 HOH HOH . J 8 HOH A 94 1194 144 HOH HOH . J 8 HOH A 95 1195 197 HOH HOH . J 8 HOH A 96 1196 122 HOH HOH . J 8 HOH A 97 1197 119 HOH HOH . J 8 HOH A 98 1198 68 HOH HOH . J 8 HOH A 99 1199 70 HOH HOH . J 8 HOH A 100 1200 120 HOH HOH . J 8 HOH A 101 1201 207 HOH HOH . J 8 HOH A 102 1202 10 HOH HOH . J 8 HOH A 103 1203 133 HOH HOH . J 8 HOH A 104 1204 157 HOH HOH . J 8 HOH A 105 1205 42 HOH HOH . J 8 HOH A 106 1206 141 HOH HOH . J 8 HOH A 107 1207 82 HOH HOH . J 8 HOH A 108 1208 146 HOH HOH . J 8 HOH A 109 1209 34 HOH HOH . J 8 HOH A 110 1210 165 HOH HOH . J 8 HOH A 111 1211 186 HOH HOH . J 8 HOH A 112 1212 13 HOH HOH . J 8 HOH A 113 1213 226 HOH HOH . J 8 HOH A 114 1214 31 HOH HOH . J 8 HOH A 115 1215 58 HOH HOH . J 8 HOH A 116 1216 140 HOH HOH . J 8 HOH A 117 1217 25 HOH HOH . J 8 HOH A 118 1218 217 HOH HOH . J 8 HOH A 119 1219 116 HOH HOH . J 8 HOH A 120 1220 212 HOH HOH . J 8 HOH A 121 1221 135 HOH HOH . J 8 HOH A 122 1222 187 HOH HOH . J 8 HOH A 123 1223 67 HOH HOH . J 8 HOH A 124 1224 101 HOH HOH . J 8 HOH A 125 1225 15 HOH HOH . J 8 HOH A 126 1226 17 HOH HOH . J 8 HOH A 127 1227 16 HOH HOH . J 8 HOH A 128 1228 84 HOH HOH . J 8 HOH A 129 1229 131 HOH HOH . J 8 HOH A 130 1230 137 HOH HOH . J 8 HOH A 131 1231 35 HOH HOH . J 8 HOH A 132 1232 194 HOH HOH . J 8 HOH A 133 1233 164 HOH HOH . J 8 HOH A 134 1234 203 HOH HOH . J 8 HOH A 135 1235 71 HOH HOH . J 8 HOH A 136 1236 181 HOH HOH . J 8 HOH A 137 1237 4 HOH HOH . J 8 HOH A 138 1238 49 HOH HOH . J 8 HOH A 139 1239 153 HOH HOH . J 8 HOH A 140 1240 66 HOH HOH . J 8 HOH A 141 1241 9 HOH HOH . J 8 HOH A 142 1242 56 HOH HOH . J 8 HOH A 143 1243 48 HOH HOH . J 8 HOH A 144 1244 114 HOH HOH . J 8 HOH A 145 1245 193 HOH HOH . J 8 HOH A 146 1246 64 HOH HOH . J 8 HOH A 147 1247 183 HOH HOH . J 8 HOH A 148 1248 195 HOH HOH . J 8 HOH A 149 1249 134 HOH HOH . J 8 HOH A 150 1250 38 HOH HOH . J 8 HOH A 151 1251 159 HOH HOH . J 8 HOH A 152 1252 192 HOH HOH . J 8 HOH A 153 1253 98 HOH HOH . J 8 HOH A 154 1254 99 HOH HOH . J 8 HOH A 155 1255 104 HOH HOH . J 8 HOH A 156 1256 86 HOH HOH . J 8 HOH A 157 1257 109 HOH HOH . J 8 HOH A 158 1258 200 HOH HOH . J 8 HOH A 159 1259 106 HOH HOH . J 8 HOH A 160 1260 87 HOH HOH . J 8 HOH A 161 1261 11 HOH HOH . J 8 HOH A 162 1262 78 HOH HOH . J 8 HOH A 163 1263 30 HOH HOH . J 8 HOH A 164 1264 54 HOH HOH . J 8 HOH A 165 1265 124 HOH HOH . J 8 HOH A 166 1266 184 HOH HOH . J 8 HOH A 167 1267 77 HOH HOH . J 8 HOH A 168 1268 174 HOH HOH . J 8 HOH A 169 1269 145 HOH HOH . J 8 HOH A 170 1270 161 HOH HOH . J 8 HOH A 171 1271 138 HOH HOH . J 8 HOH A 172 1272 209 HOH HOH . J 8 HOH A 173 1273 107 HOH HOH . J 8 HOH A 174 1274 73 HOH HOH . J 8 HOH A 175 1275 228 HOH HOH . J 8 HOH A 176 1276 173 HOH HOH . J 8 HOH A 177 1277 218 HOH HOH . J 8 HOH A 178 1278 69 HOH HOH . J 8 HOH A 179 1279 45 HOH HOH . J 8 HOH A 180 1280 223 HOH HOH . J 8 HOH A 181 1281 219 HOH HOH . J 8 HOH A 182 1282 59 HOH HOH . J 8 HOH A 183 1283 214 HOH HOH . J 8 HOH A 184 1284 88 HOH HOH . J 8 HOH A 185 1285 150 HOH HOH . J 8 HOH A 186 1286 111 HOH HOH . J 8 HOH A 187 1287 74 HOH HOH . J 8 HOH A 188 1288 190 HOH HOH . J 8 HOH A 189 1289 136 HOH HOH . J 8 HOH A 190 1290 225 HOH HOH . J 8 HOH A 191 1291 208 HOH HOH . J 8 HOH A 192 1292 233 HOH HOH . J 8 HOH A 193 1293 178 HOH HOH . J 8 HOH A 194 1294 33 HOH HOH . J 8 HOH A 195 1295 176 HOH HOH . J 8 HOH A 196 1296 222 HOH HOH . J 8 HOH A 197 1297 102 HOH HOH . J 8 HOH A 198 1298 210 HOH HOH . J 8 HOH A 199 1299 50 HOH HOH . J 8 HOH A 200 1300 177 HOH HOH . J 8 HOH A 201 1301 79 HOH HOH . J 8 HOH A 202 1302 12 HOH HOH . J 8 HOH A 203 1303 90 HOH HOH . J 8 HOH A 204 1304 206 HOH HOH . J 8 HOH A 205 1305 220 HOH HOH . J 8 HOH A 206 1306 28 HOH HOH . J 8 HOH A 207 1307 130 HOH HOH . J 8 HOH A 208 1308 52 HOH HOH . J 8 HOH A 209 1309 81 HOH HOH . J 8 HOH A 210 1310 180 HOH HOH . J 8 HOH A 211 1311 105 HOH HOH . J 8 HOH A 212 1312 189 HOH HOH . J 8 HOH A 213 1313 113 HOH HOH . J 8 HOH A 214 1314 202 HOH HOH . J 8 HOH A 215 1315 211 HOH HOH . J 8 HOH A 216 1316 221 HOH HOH . J 8 HOH A 217 1317 19 HOH HOH . J 8 HOH A 218 1318 112 HOH HOH . J 8 HOH A 219 1319 196 HOH HOH . J 8 HOH A 220 1320 75 HOH HOH . J 8 HOH A 221 1321 128 HOH HOH . J 8 HOH A 222 1322 224 HOH HOH . J 8 HOH A 223 1323 118 HOH HOH . J 8 HOH A 224 1324 132 HOH HOH . J 8 HOH A 225 1325 199 HOH HOH . J 8 HOH A 226 1326 129 HOH HOH . J 8 HOH A 227 1327 216 HOH HOH . J 8 HOH A 228 1328 62 HOH HOH . J 8 HOH A 229 1329 149 HOH HOH . J 8 HOH A 230 1330 201 HOH HOH . J 8 HOH A 231 1331 123 HOH HOH . J 8 HOH A 232 1332 80 HOH HOH . J 8 HOH A 233 1333 204 HOH HOH . J 8 HOH A 234 1334 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 THJ . . . H 7 24.193 10.289 9.863 0.42 23.2 ? S1 THJ 1007 A 1 HETATM 2 O O1 THJ . . . H 7 23.277 9.542 8.972 0.42 21.53 ? O1 THJ 1007 A 1 HETATM 3 O O2 THJ . . . H 7 25.586 10.182 9.346 0.42 20.63 ? O2 THJ 1007 A 1 HETATM 4 O O3 THJ . . . H 7 24.114 9.726 11.219 0.42 25.51 ? O3 THJ 1007 A 1 HETATM 5 S S2 THJ . . . H 7 23.65 12.003 9.948 0.42 25.25 ? S2 THJ 1007 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 493 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #