data_4WQD # _model_server_result.job_id jUfwlQVsMz59Fv6o3aQB5g _model_server_result.datetime_utc '2024-12-27 01:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 4WQD # _exptl.entry_id 4WQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.07 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.99 _cell.angle_gamma 90 _cell.entry_id 4WQD _cell.length_a 79.093 _cell.length_b 70.811 _cell.length_c 57.873 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 95 A ASP 95 1_555 A N CSS 96 A CSS 96 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C CSS 96 A CSS 96 1_555 A N PHE 97 A PHE 97 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C H5 N3' _chem_comp.formula_weight 59.07 _chem_comp.id GAI _chem_comp.mon_nstd_flag . _chem_comp.name GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N1 GAI doub 106 n n C N2 GAI sing 107 n n C N3 GAI sing 108 n n N1 HN1 GAI sing 109 n n N2 HN21 GAI sing 110 n n N2 HN22 GAI sing 111 n n N3 HN31 GAI sing 112 n n N3 HN32 GAI sing 113 n n # _atom_sites.entry_id 4WQD _atom_sites.fract_transf_matrix[1][1] 0.012643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010235 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 1001 1001 HEC HEC . C 2 HEC A 1 1002 1002 HEC HEC . D 3 IOD A 1 1003 2001 IOD IOD . E 4 EDO A 1 1004 3001 EDO EDO . F 5 GAI A 1 1005 4001 GAI GAI . G 6 SO4 A 1 1006 5001 SO4 SO4 . H 7 HOH A 1 1101 200 HOH HOH . H 7 HOH A 2 1102 211 HOH HOH . H 7 HOH A 3 1103 115 HOH HOH . H 7 HOH A 4 1104 262 HOH HOH . H 7 HOH A 5 1105 204 HOH HOH . H 7 HOH A 6 1106 193 HOH HOH . H 7 HOH A 7 1107 138 HOH HOH . H 7 HOH A 8 1108 132 HOH HOH . H 7 HOH A 9 1109 113 HOH HOH . H 7 HOH A 10 1110 231 HOH HOH . H 7 HOH A 11 1111 117 HOH HOH . H 7 HOH A 12 1112 14 HOH HOH . H 7 HOH A 13 1113 172 HOH HOH . H 7 HOH A 14 1114 12 HOH HOH . H 7 HOH A 15 1115 19 HOH HOH . H 7 HOH A 16 1116 255 HOH HOH . H 7 HOH A 17 1117 276 HOH HOH . H 7 HOH A 18 1118 30 HOH HOH . H 7 HOH A 19 1119 112 HOH HOH . H 7 HOH A 20 1120 50 HOH HOH . H 7 HOH A 21 1121 75 HOH HOH . H 7 HOH A 22 1122 226 HOH HOH . H 7 HOH A 23 1123 28 HOH HOH . H 7 HOH A 24 1124 104 HOH HOH . H 7 HOH A 25 1125 139 HOH HOH . H 7 HOH A 26 1126 209 HOH HOH . H 7 HOH A 27 1127 95 HOH HOH . H 7 HOH A 28 1128 33 HOH HOH . H 7 HOH A 29 1129 198 HOH HOH . H 7 HOH A 30 1130 174 HOH HOH . H 7 HOH A 31 1131 187 HOH HOH . H 7 HOH A 32 1132 36 HOH HOH . H 7 HOH A 33 1133 202 HOH HOH . H 7 HOH A 34 1134 154 HOH HOH . H 7 HOH A 35 1135 82 HOH HOH . H 7 HOH A 36 1136 101 HOH HOH . H 7 HOH A 37 1137 60 HOH HOH . H 7 HOH A 38 1138 195 HOH HOH . H 7 HOH A 39 1139 17 HOH HOH . H 7 HOH A 40 1140 76 HOH HOH . H 7 HOH A 41 1141 13 HOH HOH . H 7 HOH A 42 1142 86 HOH HOH . H 7 HOH A 43 1143 155 HOH HOH . H 7 HOH A 44 1144 39 HOH HOH . H 7 HOH A 45 1145 23 HOH HOH . H 7 HOH A 46 1146 24 HOH HOH . H 7 HOH A 47 1147 168 HOH HOH . H 7 HOH A 48 1148 16 HOH HOH . H 7 HOH A 49 1149 11 HOH HOH . H 7 HOH A 50 1150 7 HOH HOH . H 7 HOH A 51 1151 52 HOH HOH . H 7 HOH A 52 1152 188 HOH HOH . H 7 HOH A 53 1153 80 HOH HOH . H 7 HOH A 54 1154 153 HOH HOH . H 7 HOH A 55 1155 238 HOH HOH . H 7 HOH A 56 1156 63 HOH HOH . H 7 HOH A 57 1157 83 HOH HOH . H 7 HOH A 58 1158 241 HOH HOH . H 7 HOH A 59 1159 53 HOH HOH . H 7 HOH A 60 1160 120 HOH HOH . H 7 HOH A 61 1161 2 HOH HOH . H 7 HOH A 62 1162 176 HOH HOH . H 7 HOH A 63 1163 127 HOH HOH . H 7 HOH A 64 1164 274 HOH HOH . H 7 HOH A 65 1165 102 HOH HOH . H 7 HOH A 66 1166 42 HOH HOH . H 7 HOH A 67 1167 91 HOH HOH . H 7 HOH A 68 1168 257 HOH HOH . H 7 HOH A 69 1169 182 HOH HOH . H 7 HOH A 70 1170 119 HOH HOH . H 7 HOH A 71 1171 106 HOH HOH . H 7 HOH A 72 1172 133 HOH HOH . H 7 HOH A 73 1173 99 HOH HOH . H 7 HOH A 74 1174 158 HOH HOH . H 7 HOH A 75 1175 256 HOH HOH . H 7 HOH A 76 1176 61 HOH HOH . H 7 HOH A 77 1177 199 HOH HOH . H 7 HOH A 78 1178 254 HOH HOH . H 7 HOH A 79 1179 161 HOH HOH . H 7 HOH A 80 1180 122 HOH HOH . H 7 HOH A 81 1181 142 HOH HOH . H 7 HOH A 82 1182 235 HOH HOH . H 7 HOH A 83 1183 135 HOH HOH . H 7 HOH A 84 1184 190 HOH HOH . H 7 HOH A 85 1185 273 HOH HOH . H 7 HOH A 86 1186 192 HOH HOH . H 7 HOH A 87 1187 146 HOH HOH . H 7 HOH A 88 1188 84 HOH HOH . H 7 HOH A 89 1189 194 HOH HOH . H 7 HOH A 90 1190 137 HOH HOH . H 7 HOH A 91 1191 197 HOH HOH . H 7 HOH A 92 1192 93 HOH HOH . H 7 HOH A 93 1193 230 HOH HOH . H 7 HOH A 94 1194 247 HOH HOH . H 7 HOH A 95 1195 92 HOH HOH . H 7 HOH A 96 1196 141 HOH HOH . H 7 HOH A 97 1197 280 HOH HOH . H 7 HOH A 98 1198 229 HOH HOH . H 7 HOH A 99 1199 162 HOH HOH . H 7 HOH A 100 1200 166 HOH HOH . H 7 HOH A 101 1201 1 HOH HOH . H 7 HOH A 102 1202 3 HOH HOH . H 7 HOH A 103 1203 4 HOH HOH . H 7 HOH A 104 1204 5 HOH HOH . H 7 HOH A 105 1205 6 HOH HOH . H 7 HOH A 106 1206 8 HOH HOH . H 7 HOH A 107 1207 9 HOH HOH . H 7 HOH A 108 1208 10 HOH HOH . H 7 HOH A 109 1209 15 HOH HOH . H 7 HOH A 110 1210 18 HOH HOH . H 7 HOH A 111 1211 20 HOH HOH . H 7 HOH A 112 1212 21 HOH HOH . H 7 HOH A 113 1213 22 HOH HOH . H 7 HOH A 114 1214 25 HOH HOH . H 7 HOH A 115 1215 26 HOH HOH . H 7 HOH A 116 1216 27 HOH HOH . H 7 HOH A 117 1217 29 HOH HOH . H 7 HOH A 118 1218 31 HOH HOH . H 7 HOH A 119 1219 32 HOH HOH . H 7 HOH A 120 1220 34 HOH HOH . H 7 HOH A 121 1221 35 HOH HOH . H 7 HOH A 122 1222 37 HOH HOH . H 7 HOH A 123 1223 38 HOH HOH . H 7 HOH A 124 1224 40 HOH HOH . H 7 HOH A 125 1225 41 HOH HOH . H 7 HOH A 126 1226 43 HOH HOH . H 7 HOH A 127 1227 44 HOH HOH . H 7 HOH A 128 1228 45 HOH HOH . H 7 HOH A 129 1229 46 HOH HOH . H 7 HOH A 130 1230 47 HOH HOH . H 7 HOH A 131 1231 48 HOH HOH . H 7 HOH A 132 1232 49 HOH HOH . H 7 HOH A 133 1233 51 HOH HOH . H 7 HOH A 134 1234 54 HOH HOH . H 7 HOH A 135 1235 55 HOH HOH . H 7 HOH A 136 1236 56 HOH HOH . H 7 HOH A 137 1237 57 HOH HOH . H 7 HOH A 138 1238 58 HOH HOH . H 7 HOH A 139 1239 59 HOH HOH . H 7 HOH A 140 1240 62 HOH HOH . H 7 HOH A 141 1241 64 HOH HOH . H 7 HOH A 142 1242 65 HOH HOH . H 7 HOH A 143 1243 66 HOH HOH . H 7 HOH A 144 1244 67 HOH HOH . H 7 HOH A 145 1245 68 HOH HOH . H 7 HOH A 146 1246 69 HOH HOH . H 7 HOH A 147 1247 70 HOH HOH . H 7 HOH A 148 1248 71 HOH HOH . H 7 HOH A 149 1249 72 HOH HOH . H 7 HOH A 150 1250 73 HOH HOH . H 7 HOH A 151 1251 74 HOH HOH . H 7 HOH A 152 1252 77 HOH HOH . H 7 HOH A 153 1253 78 HOH HOH . H 7 HOH A 154 1254 79 HOH HOH . H 7 HOH A 155 1255 81 HOH HOH . H 7 HOH A 156 1256 85 HOH HOH . H 7 HOH A 157 1257 87 HOH HOH . H 7 HOH A 158 1258 88 HOH HOH . H 7 HOH A 159 1259 89 HOH HOH . H 7 HOH A 160 1260 90 HOH HOH . H 7 HOH A 161 1261 94 HOH HOH . H 7 HOH A 162 1262 96 HOH HOH . H 7 HOH A 163 1263 97 HOH HOH . H 7 HOH A 164 1264 100 HOH HOH . H 7 HOH A 165 1265 103 HOH HOH . H 7 HOH A 166 1266 105 HOH HOH . H 7 HOH A 167 1267 107 HOH HOH . H 7 HOH A 168 1268 108 HOH HOH . H 7 HOH A 169 1269 109 HOH HOH . H 7 HOH A 170 1270 110 HOH HOH . H 7 HOH A 171 1271 111 HOH HOH . H 7 HOH A 172 1272 114 HOH HOH . H 7 HOH A 173 1273 116 HOH HOH . H 7 HOH A 174 1274 118 HOH HOH . H 7 HOH A 175 1275 121 HOH HOH . H 7 HOH A 176 1276 123 HOH HOH . H 7 HOH A 177 1277 124 HOH HOH . H 7 HOH A 178 1278 125 HOH HOH . H 7 HOH A 179 1279 126 HOH HOH . H 7 HOH A 180 1280 128 HOH HOH . H 7 HOH A 181 1281 130 HOH HOH . H 7 HOH A 182 1282 131 HOH HOH . H 7 HOH A 183 1283 134 HOH HOH . H 7 HOH A 184 1284 136 HOH HOH . H 7 HOH A 185 1285 140 HOH HOH . H 7 HOH A 186 1286 143 HOH HOH . H 7 HOH A 187 1287 144 HOH HOH . H 7 HOH A 188 1288 145 HOH HOH . H 7 HOH A 189 1289 147 HOH HOH . H 7 HOH A 190 1290 148 HOH HOH . H 7 HOH A 191 1291 149 HOH HOH . H 7 HOH A 192 1292 150 HOH HOH . H 7 HOH A 193 1293 151 HOH HOH . H 7 HOH A 194 1294 152 HOH HOH . H 7 HOH A 195 1295 156 HOH HOH . H 7 HOH A 196 1296 157 HOH HOH . H 7 HOH A 197 1297 159 HOH HOH . H 7 HOH A 198 1298 160 HOH HOH . H 7 HOH A 199 1299 163 HOH HOH . H 7 HOH A 200 1300 164 HOH HOH . H 7 HOH A 201 1301 165 HOH HOH . H 7 HOH A 202 1302 167 HOH HOH . H 7 HOH A 203 1303 169 HOH HOH . H 7 HOH A 204 1304 170 HOH HOH . H 7 HOH A 205 1305 171 HOH HOH . H 7 HOH A 206 1306 173 HOH HOH . H 7 HOH A 207 1307 175 HOH HOH . H 7 HOH A 208 1308 177 HOH HOH . H 7 HOH A 209 1309 178 HOH HOH . H 7 HOH A 210 1310 179 HOH HOH . H 7 HOH A 211 1311 180 HOH HOH . H 7 HOH A 212 1312 183 HOH HOH . H 7 HOH A 213 1313 184 HOH HOH . H 7 HOH A 214 1314 185 HOH HOH . H 7 HOH A 215 1315 186 HOH HOH . H 7 HOH A 216 1316 189 HOH HOH . H 7 HOH A 217 1317 191 HOH HOH . H 7 HOH A 218 1318 201 HOH HOH . H 7 HOH A 219 1319 206 HOH HOH . H 7 HOH A 220 1320 208 HOH HOH . H 7 HOH A 221 1321 210 HOH HOH . H 7 HOH A 222 1322 212 HOH HOH . H 7 HOH A 223 1323 215 HOH HOH . H 7 HOH A 224 1324 216 HOH HOH . H 7 HOH A 225 1325 217 HOH HOH . H 7 HOH A 226 1326 219 HOH HOH . H 7 HOH A 227 1327 220 HOH HOH . H 7 HOH A 228 1328 221 HOH HOH . H 7 HOH A 229 1329 222 HOH HOH . H 7 HOH A 230 1330 223 HOH HOH . H 7 HOH A 231 1331 224 HOH HOH . H 7 HOH A 232 1332 225 HOH HOH . H 7 HOH A 233 1333 227 HOH HOH . H 7 HOH A 234 1334 228 HOH HOH . H 7 HOH A 235 1335 232 HOH HOH . H 7 HOH A 236 1336 236 HOH HOH . H 7 HOH A 237 1337 237 HOH HOH . H 7 HOH A 238 1338 245 HOH HOH . H 7 HOH A 239 1339 246 HOH HOH . H 7 HOH A 240 1340 250 HOH HOH . H 7 HOH A 241 1341 251 HOH HOH . H 7 HOH A 242 1342 252 HOH HOH . H 7 HOH A 243 1343 253 HOH HOH . H 7 HOH A 244 1344 258 HOH HOH . H 7 HOH A 245 1345 260 HOH HOH . H 7 HOH A 246 1346 261 HOH HOH . H 7 HOH A 247 1347 263 HOH HOH . H 7 HOH A 248 1348 264 HOH HOH . H 7 HOH A 249 1349 265 HOH HOH . H 7 HOH A 250 1350 266 HOH HOH . H 7 HOH A 251 1351 268 HOH HOH . H 7 HOH A 252 1352 269 HOH HOH . H 7 HOH A 253 1353 270 HOH HOH . H 7 HOH A 254 1354 275 HOH HOH . H 7 HOH A 255 1355 277 HOH HOH . H 7 HOH A 256 1356 278 HOH HOH . H 7 HOH A 257 1357 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GAI . . . F 5 25.011 13.334 12.347 0.66 27.89 ? C GAI 1005 A 1 HETATM 2 N N1 GAI . . . F 5 24.612 13.229 11.096 0.66 28.57 ? N1 GAI 1005 A 1 HETATM 3 N N2 GAI . . . F 5 25.809 12.409 12.821 0.66 27.03 ? N2 GAI 1005 A 1 HETATM 4 N N3 GAI . . . F 5 24.641 14.3 13.055 0.66 28.51 ? N3 GAI 1005 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 1181 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #