data_4WQJ # _model_server_result.job_id Tb4y1_eIrQBMAx-jju5sXw _model_server_result.datetime_utc '2024-11-24 13:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WQJ # _exptl.entry_id 4WQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WQJ _cell.length_a 168.68 _cell.length_b 168.68 _cell.length_c 76.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 B FE HEM . A HEM 401 1_555 C N1 36Y . A 36Y 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 162 n n CHA C4D HEM doub 163 n n CHA HHA HEM sing 164 n n CHB C4A HEM sing 165 n n CHB C1B HEM doub 166 n n CHB HHB HEM sing 167 n n CHC C4B HEM sing 168 n n CHC C1C HEM doub 169 n n CHC HHC HEM sing 170 n n CHD C4C HEM doub 171 n n CHD C1D HEM sing 172 n n CHD HHD HEM sing 173 n n C1A C2A HEM doub 174 n y C1A NA HEM sing 175 n y C2A C3A HEM sing 176 n y C2A CAA HEM sing 177 n n C3A C4A HEM doub 178 n y C3A CMA HEM sing 179 n n C4A NA HEM sing 180 n y CMA HMA HEM sing 181 n n CMA HMAA HEM sing 182 n n CMA HMAB HEM sing 183 n n CAA CBA HEM sing 184 n n CAA HAA HEM sing 185 n n CAA HAAA HEM sing 186 n n CBA CGA HEM sing 187 n n CBA HBA HEM sing 188 n n CBA HBAA HEM sing 189 n n CGA O1A HEM doub 190 n n CGA O2A HEM sing 191 n n C1B C2B HEM sing 192 n n C1B NB HEM sing 193 n n C2B C3B HEM doub 194 n n C2B CMB HEM sing 195 n n C3B C4B HEM sing 196 n n C3B CAB HEM sing 197 n n C4B NB HEM doub 198 n n CMB HMB HEM sing 199 n n CMB HMBA HEM sing 200 n n CMB HMBB HEM sing 201 n n CAB CBB HEM doub 202 n n CAB HAB HEM sing 203 n n CBB HBB HEM sing 204 n n CBB HBBA HEM sing 205 n n C1C C2C HEM sing 206 n y C1C NC HEM sing 207 n y C2C C3C HEM doub 208 n y C2C CMC HEM sing 209 n n C3C C4C HEM sing 210 n y C3C CAC HEM sing 211 n n C4C NC HEM sing 212 n y CMC HMC HEM sing 213 n n CMC HMCA HEM sing 214 n n CMC HMCB HEM sing 215 n n CAC CBC HEM doub 216 n n CAC HAC HEM sing 217 n n CBC HBC HEM sing 218 n n CBC HBCA HEM sing 219 n n C1D C2D HEM sing 220 n n C1D ND HEM doub 221 n n C2D C3D HEM doub 222 n n C2D CMD HEM sing 223 n n C3D C4D HEM sing 224 n n C3D CAD HEM sing 225 n n C4D ND HEM sing 226 n n CMD HMD HEM sing 227 n n CMD HMDA HEM sing 228 n n CMD HMDB HEM sing 229 n n CAD CBD HEM sing 230 n n CAD HAD HEM sing 231 n n CAD HADA HEM sing 232 n n CBD CGD HEM sing 233 n n CBD HBD HEM sing 234 n n CBD HBDA HEM sing 235 n n CGD O1D HEM doub 236 n n CGD O2D HEM sing 237 n n O2A H2A HEM sing 238 n n O2D H2D HEM sing 239 n n FE NA HEM sing 240 n n FE NB HEM sing 241 n n FE NC HEM sing 242 n n FE ND HEM sing 243 n n # _atom_sites.entry_id 4WQJ _atom_sites.fract_transf_matrix[1][1] 0.005928 _atom_sites.fract_transf_matrix[1][2] 0.003423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 410 HEM HEM . C 3 36Y A 1 402 500 36Y BPC . D 4 GOL A 1 403 550 GOL GOL . E 5 HOH A 1 501 2 HOH HOH . E 5 HOH A 2 502 1 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 40.184 -46.481 -7.533 1 49.69 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 41.194 -41.732 -7.749 1 52.22 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 44.244 -42.132 -3.999 1 48.39 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 43.857 -46.926 -4.384 1 48.12 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 40.175 -45.155 -7.91 1 49.68 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 39.345 -44.566 -8.951 1 53.31 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 39.632 -43.256 -8.999 1 50.02 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 40.641 -42.973 -7.998 1 49.41 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 39.011 -42.211 -9.942 1 44.27 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 38.308 -45.309 -9.832 1 47.83 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 38.936 -46.241 -10.861 1 41.04 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 37.864 -46.678 -11.836 1 53.08 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 36.649 -46.739 -11.45 1 52.18 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 38.225 -46.977 -13.01 1 50.81 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 42.052 -41.42 -6.72 1 49 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 42.43 -40.076 -6.305 1 54.23 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 43.295 -40.21 -5.277 1 52.4 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 43.458 -41.618 -5.005 1 49.13 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 41.924 -38.771 -6.977 1 46.87 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 44.016 -39.134 -4.436 1 52.65 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 43.704 -37.835 -4.473 1 55.85 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 44.369 -43.469 -3.728 1 48 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 45.104 -44.091 -2.636 1 51.23 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 44.958 -45.422 -2.784 1 54.52 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 44.167 -45.668 -3.954 1 50.57 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 45.861 -43.349 -1.509 1 45 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 45.495 -46.625 -1.979 1 53.58 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 46.544 -46.566 -1.164 1 60.99 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 42.834 -47.262 -5.215 1 45.15 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 42.409 -48.611 -5.459 1 43.29 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 41.254 -48.475 -6.442 1 48.06 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 41.107 -47.06 -6.696 1 45.55 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 42.969 -49.906 -4.852 1 44.02 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 40.423 -49.634 -7.002 1 50.12 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 39.358 -49.98 -5.962 1 48.49 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 38.382 -50.939 -6.602 1 52.38 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 38.548 -51.246 -7.821 1 50.01 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 37.432 -51.391 -5.9 1 52.2 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 40.948 -44.152 -7.352 1 44.19 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 42.696 -42.331 -5.91 1 44.33 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 43.827 -44.466 -4.516 1 49.98 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 42.063 -46.383 -5.958 1 44.85 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 42.449 -44.381 -5.961 1 50.33 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #