data_4WR4 # _model_server_result.job_id yILjFQZX63j2sSARTVJEZQ _model_server_result.datetime_utc '2025-01-10 10:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WR4 # _exptl.entry_id 4WR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WR4 _cell.length_a 63.85 _cell.length_b 63.85 _cell.length_c 225.02 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -31.925 55.295722 -37.503333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 24 A SER -1 1_555 A N BYR 25 A BYR 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C BYR 25 A BYR 0 1_555 A N SER 26 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLU 46 A GLU 21 1_555 A N BYR 47 A BYR 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C BYR 47 A BYR 22 1_555 A N LEU 48 A LEU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 56 A LEU 31 1_555 A N BYR 57 A BYR 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C BYR 57 A BYR 32 1_555 A N GLU 58 A GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C TYR 81 A TYR 56 1_555 A N BYR 82 A BYR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C BYR 82 A BYR 57 1_555 A N ILE 83 A ILE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C ARG 97 A ARG 72 1_555 A N BYR 98 A BYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C BYR 98 A BYR 73 1_555 A N ILE 99 A ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C THR 165 A THR 140 1_555 A N BYR 166 A BYR 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C BYR 166 A BYR 141 1_555 A N LEU 167 A LEU 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C LEU 187 A LEU 162 1_555 A N BYR 188 A BYR 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 A C BYR 188 A BYR 163 1_555 A N MET 189 A MET 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 153 n n N1 HN11 GSH sing 154 n n N1 HN12 GSH sing 155 n n CA1 C1 GSH sing 156 n n CA1 CB1 GSH sing 157 n n CA1 HA1 GSH sing 158 n n C1 O11 GSH doub 159 n n C1 O12 GSH sing 160 n n O12 H12 GSH sing 161 n n CB1 CG1 GSH sing 162 n n CB1 HB12 GSH sing 163 n n CB1 HB13 GSH sing 164 n n CG1 CD1 GSH sing 165 n n CG1 HG12 GSH sing 166 n n CG1 HG13 GSH sing 167 n n CD1 OE1 GSH doub 168 n n CD1 N2 GSH sing 169 n n N2 CA2 GSH sing 170 n n N2 HN2 GSH sing 171 n n CA2 C2 GSH sing 172 n n CA2 CB2 GSH sing 173 n n CA2 HA2 GSH sing 174 n n C2 O2 GSH doub 175 n n C2 N3 GSH sing 176 n n CB2 SG2 GSH sing 177 n n CB2 HB22 GSH sing 178 n n CB2 HB23 GSH sing 179 n n SG2 HSG GSH sing 180 n n N3 CA3 GSH sing 181 n n N3 HN3 GSH sing 182 n n CA3 C3 GSH sing 183 n n CA3 HA31 GSH sing 184 n n CA3 HA32 GSH sing 185 n n C3 O31 GSH doub 186 n n C3 O32 GSH sing 187 n n O32 H32 GSH sing 188 n n # _atom_sites.entry_id 4WR4 _atom_sites.fract_transf_matrix[1][1] 0.015662 _atom_sites.fract_transf_matrix[1][2] 0.009042 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 301 GSH GSH . C 3 SO4 A 1 302 302 SO4 SO4 . D 3 SO4 A 1 303 303 SO4 SO4 . E 4 HOH A 1 401 482 HOH HOH . E 4 HOH A 2 402 497 HOH HOH . E 4 HOH A 3 403 424 HOH HOH . E 4 HOH A 4 404 507 HOH HOH . E 4 HOH A 5 405 499 HOH HOH . E 4 HOH A 6 406 534 HOH HOH . E 4 HOH A 7 407 416 HOH HOH . E 4 HOH A 8 408 480 HOH HOH . E 4 HOH A 9 409 477 HOH HOH . E 4 HOH A 10 410 426 HOH HOH . E 4 HOH A 11 411 419 HOH HOH . E 4 HOH A 12 412 500 HOH HOH . E 4 HOH A 13 413 418 HOH HOH . E 4 HOH A 14 414 469 HOH HOH . E 4 HOH A 15 415 455 HOH HOH . E 4 HOH A 16 416 446 HOH HOH . E 4 HOH A 17 417 484 HOH HOH . E 4 HOH A 18 418 495 HOH HOH . E 4 HOH A 19 419 511 HOH HOH . E 4 HOH A 20 420 431 HOH HOH . E 4 HOH A 21 421 434 HOH HOH . E 4 HOH A 22 422 472 HOH HOH . E 4 HOH A 23 423 528 HOH HOH . E 4 HOH A 24 424 523 HOH HOH . E 4 HOH A 25 425 483 HOH HOH . E 4 HOH A 26 426 409 HOH HOH . E 4 HOH A 27 427 474 HOH HOH . E 4 HOH A 28 428 478 HOH HOH . E 4 HOH A 29 429 420 HOH HOH . E 4 HOH A 30 430 516 HOH HOH . E 4 HOH A 31 431 403 HOH HOH . E 4 HOH A 32 432 476 HOH HOH . E 4 HOH A 33 433 463 HOH HOH . E 4 HOH A 34 434 462 HOH HOH . E 4 HOH A 35 435 449 HOH HOH . E 4 HOH A 36 436 453 HOH HOH . E 4 HOH A 37 437 441 HOH HOH . E 4 HOH A 38 438 436 HOH HOH . E 4 HOH A 39 439 417 HOH HOH . E 4 HOH A 40 440 432 HOH HOH . E 4 HOH A 41 441 404 HOH HOH . E 4 HOH A 42 442 486 HOH HOH . E 4 HOH A 43 443 508 HOH HOH . E 4 HOH A 44 444 471 HOH HOH . E 4 HOH A 45 445 410 HOH HOH . E 4 HOH A 46 446 405 HOH HOH . E 4 HOH A 47 447 531 HOH HOH . E 4 HOH A 48 448 439 HOH HOH . E 4 HOH A 49 449 522 HOH HOH . E 4 HOH A 50 450 524 HOH HOH . E 4 HOH A 51 451 530 HOH HOH . E 4 HOH A 52 452 514 HOH HOH . E 4 HOH A 53 453 509 HOH HOH . E 4 HOH A 54 454 429 HOH HOH . E 4 HOH A 55 455 529 HOH HOH . E 4 HOH A 56 456 517 HOH HOH . E 4 HOH A 57 457 438 HOH HOH . E 4 HOH A 58 458 505 HOH HOH . E 4 HOH A 59 459 401 HOH HOH . E 4 HOH A 60 460 402 HOH HOH . E 4 HOH A 61 461 406 HOH HOH . E 4 HOH A 62 462 407 HOH HOH . E 4 HOH A 63 463 408 HOH HOH . E 4 HOH A 64 464 411 HOH HOH . E 4 HOH A 65 465 412 HOH HOH . E 4 HOH A 66 466 413 HOH HOH . E 4 HOH A 67 467 414 HOH HOH . E 4 HOH A 68 468 415 HOH HOH . E 4 HOH A 69 469 421 HOH HOH . E 4 HOH A 70 470 422 HOH HOH . E 4 HOH A 71 471 423 HOH HOH . E 4 HOH A 72 472 425 HOH HOH . E 4 HOH A 73 473 427 HOH HOH . E 4 HOH A 74 474 428 HOH HOH . E 4 HOH A 75 475 430 HOH HOH . E 4 HOH A 76 476 433 HOH HOH . E 4 HOH A 77 477 435 HOH HOH . E 4 HOH A 78 478 437 HOH HOH . E 4 HOH A 79 479 440 HOH HOH . E 4 HOH A 80 480 442 HOH HOH . E 4 HOH A 81 481 443 HOH HOH . E 4 HOH A 82 482 444 HOH HOH . E 4 HOH A 83 483 445 HOH HOH . E 4 HOH A 84 484 447 HOH HOH . E 4 HOH A 85 485 448 HOH HOH . E 4 HOH A 86 486 450 HOH HOH . E 4 HOH A 87 487 451 HOH HOH . E 4 HOH A 88 488 452 HOH HOH . E 4 HOH A 89 489 454 HOH HOH . E 4 HOH A 90 490 456 HOH HOH . E 4 HOH A 91 491 457 HOH HOH . E 4 HOH A 92 492 458 HOH HOH . E 4 HOH A 93 493 459 HOH HOH . E 4 HOH A 94 494 460 HOH HOH . E 4 HOH A 95 495 461 HOH HOH . E 4 HOH A 96 496 464 HOH HOH . E 4 HOH A 97 497 465 HOH HOH . E 4 HOH A 98 498 466 HOH HOH . E 4 HOH A 99 499 467 HOH HOH . E 4 HOH A 100 500 468 HOH HOH . E 4 HOH A 101 501 470 HOH HOH . E 4 HOH A 102 502 473 HOH HOH . E 4 HOH A 103 503 475 HOH HOH . E 4 HOH A 104 504 479 HOH HOH . E 4 HOH A 105 505 481 HOH HOH . E 4 HOH A 106 506 485 HOH HOH . E 4 HOH A 107 507 487 HOH HOH . E 4 HOH A 108 508 488 HOH HOH . E 4 HOH A 109 509 489 HOH HOH . E 4 HOH A 110 510 490 HOH HOH . E 4 HOH A 111 511 491 HOH HOH . E 4 HOH A 112 512 492 HOH HOH . E 4 HOH A 113 513 493 HOH HOH . E 4 HOH A 114 514 494 HOH HOH . E 4 HOH A 115 515 496 HOH HOH . E 4 HOH A 116 516 498 HOH HOH . E 4 HOH A 117 517 501 HOH HOH . E 4 HOH A 118 518 502 HOH HOH . E 4 HOH A 119 519 503 HOH HOH . E 4 HOH A 120 520 504 HOH HOH . E 4 HOH A 121 521 506 HOH HOH . E 4 HOH A 122 522 510 HOH HOH . E 4 HOH A 123 523 512 HOH HOH . E 4 HOH A 124 524 513 HOH HOH . E 4 HOH A 125 525 515 HOH HOH . E 4 HOH A 126 526 518 HOH HOH . E 4 HOH A 127 527 519 HOH HOH . E 4 HOH A 128 528 520 HOH HOH . E 4 HOH A 129 529 521 HOH HOH . E 4 HOH A 130 530 525 HOH HOH . E 4 HOH A 131 531 526 HOH HOH . E 4 HOH A 132 532 527 HOH HOH . E 4 HOH A 133 533 532 HOH HOH . E 4 HOH A 134 534 533 HOH HOH . E 4 HOH A 135 535 535 HOH HOH . E 4 HOH A 136 536 536 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 -23.816 19.291 -24.725 1 25.42 ? N1 GSH 301 A 1 HETATM 2 C CA1 GSH . . . B 2 -23.207 18.233 -25.471 1 23.72 ? CA1 GSH 301 A 1 HETATM 3 C C1 GSH . . . B 2 -23.465 16.956 -24.741 1 26.28 ? C1 GSH 301 A 1 HETATM 4 O O11 GSH . . . B 2 -23.462 15.881 -25.365 1 21.96 ? O11 GSH 301 A 1 HETATM 5 O O12 GSH . . . B 2 -23.769 16.942 -23.508 1 25.53 ? O12 GSH 301 A 1 HETATM 6 C CB1 GSH . . . B 2 -21.737 18.468 -25.644 1 24.58 ? CB1 GSH 301 A 1 HETATM 7 C CG1 GSH . . . B 2 -20.996 17.474 -26.5 1 25.61 ? CG1 GSH 301 A 1 HETATM 8 C CD1 GSH . . . B 2 -19.52 17.649 -26.708 1 29.79 ? CD1 GSH 301 A 1 HETATM 9 O OE1 GSH . . . B 2 -18.944 18.694 -26.384 1 29.63 ? OE1 GSH 301 A 1 HETATM 10 N N2 GSH . . . B 2 -18.783 16.558 -27.256 1 30.5 ? N2 GSH 301 A 1 HETATM 11 C CA2 GSH . . . B 2 -17.363 16.65 -27.456 1 31.83 ? CA2 GSH 301 A 1 HETATM 12 C C2 GSH . . . B 2 -17.025 16.278 -28.865 1 26.08 ? C2 GSH 301 A 1 HETATM 13 O O2 GSH . . . B 2 -15.903 15.893 -29.163 1 30.54 ? O2 GSH 301 A 1 HETATM 14 C CB2 GSH . . . B 2 -16.695 15.689 -26.521 1 30.52 ? CB2 GSH 301 A 1 HETATM 15 S SG2 GSH . . . B 2 -16.958 15.908 -24.774 1 38.08 ? SG2 GSH 301 A 1 HETATM 16 N N3 GSH . . . B 2 -18.013 16.36 -29.876 1 24.69 ? N3 GSH 301 A 1 HETATM 17 C CA3 GSH . . . B 2 -17.647 15.988 -31.204 1 27.45 ? CA3 GSH 301 A 1 HETATM 18 C C3 GSH . . . B 2 -17.995 16.994 -32.227 1 35.72 ? C3 GSH 301 A 1 HETATM 19 O O31 GSH . . . B 2 -18.042 16.635 -33.425 1 36.78 ? O31 GSH 301 A 1 HETATM 20 O O32 GSH . . . B 2 -18.243 18.183 -31.868 1 34.73 ? O32 GSH 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1124 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #