data_4WR9 # _model_server_result.job_id g62ft0fq-Fbe2ZpitASTKw _model_server_result.datetime_utc '2024-12-01 02:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4WR9 # _exptl.entry_id 4WR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WR9 _cell.length_a 97.19 _cell.length_b 97.19 _cell.length_c 44.629 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.19 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.595 84.169009 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OD1 ASP 91 A ASP 171 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A OD2 ASP 91 A ASP 171 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc3 A OE2 GLU 95 A GLU 175 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc4 A OE1 GLU 95 A GLU 175 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc5 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc6 A O ARG 117 A ARG 197 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc7 A O GLN 119 A GLN 199 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc8 A O GLY 120 A GLY 200 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc9 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc10 A O GLU 122 A GLU 202 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 A OD1 ASP 123 A ASP 203 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 A OD2 ASP 123 A ASP 203 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc13 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc14 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc15 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc16 B CA CA . A CA 301 1_555 E O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc17 B CA CA . A CA 301 1_555 E O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WR9 _atom_sites.fract_transf_matrix[1][1] 0.010289 _atom_sites.fract_transf_matrix[1][2] 0.00594 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 2 CA A 1 302 302 CA CA . D 2 CA A 1 303 303 CA CA . E 3 HOH A 1 401 403 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 411 HOH HOH . E 3 HOH A 4 404 409 HOH HOH . E 3 HOH A 5 405 405 HOH HOH . E 3 HOH A 6 406 406 HOH HOH . E 3 HOH A 7 407 410 HOH HOH . E 3 HOH A 8 408 404 HOH HOH . E 3 HOH A 9 409 407 HOH HOH . E 3 HOH A 10 410 415 HOH HOH . E 3 HOH A 11 411 408 HOH HOH . E 3 HOH A 12 412 401 HOH HOH . E 3 HOH A 13 413 423 HOH HOH . E 3 HOH A 14 414 418 HOH HOH . E 3 HOH A 15 415 417 HOH HOH . E 3 HOH A 16 416 422 HOH HOH . E 3 HOH A 17 417 413 HOH HOH . E 3 HOH A 18 418 420 HOH HOH . E 3 HOH A 19 419 414 HOH HOH . E 3 HOH A 20 420 412 HOH HOH . E 3 HOH A 21 421 419 HOH HOH . E 3 HOH A 22 422 421 HOH HOH . E 3 HOH A 23 423 425 HOH HOH . E 3 HOH A 24 424 416 HOH HOH . E 3 HOH A 25 425 426 HOH HOH . E 3 HOH A 26 426 424 HOH HOH . E 3 HOH A 27 427 427 HOH HOH . E 3 HOH A 28 428 428 HOH HOH . E 3 HOH A 29 429 429 HOH HOH . E 3 HOH A 30 430 430 HOH HOH . E 3 HOH A 31 431 431 HOH HOH . E 3 HOH A 32 432 432 HOH HOH . E 3 HOH A 33 433 433 HOH HOH . E 3 HOH A 34 434 434 HOH HOH . E 3 HOH A 35 435 435 HOH HOH . E 3 HOH A 36 436 436 HOH HOH . E 3 HOH A 37 437 437 HOH HOH . E 3 HOH A 38 438 438 HOH HOH . E 3 HOH A 39 439 439 HOH HOH . E 3 HOH A 40 440 440 HOH HOH . E 3 HOH A 41 441 441 HOH HOH . E 3 HOH A 42 442 442 HOH HOH . E 3 HOH A 43 443 443 HOH HOH . E 3 HOH A 44 444 444 HOH HOH . E 3 HOH A 45 445 445 HOH HOH . E 3 HOH A 46 446 446 HOH HOH . E 3 HOH A 47 447 447 HOH HOH . E 3 HOH A 48 448 448 HOH HOH . E 3 HOH A 49 449 449 HOH HOH . E 3 HOH A 50 450 450 HOH HOH . E 3 HOH A 51 451 451 HOH HOH . E 3 HOH A 52 452 452 HOH HOH . E 3 HOH A 53 453 453 HOH HOH . E 3 HOH A 54 454 454 HOH HOH . E 3 HOH A 55 455 455 HOH HOH . E 3 HOH A 56 456 456 HOH HOH . E 3 HOH A 57 457 457 HOH HOH . E 3 HOH A 58 458 458 HOH HOH . E 3 HOH A 59 459 459 HOH HOH . E 3 HOH A 60 460 460 HOH HOH . E 3 HOH A 61 461 461 HOH HOH . E 3 HOH A 62 462 462 HOH HOH . E 3 HOH A 63 463 463 HOH HOH . E 3 HOH A 64 464 464 HOH HOH . E 3 HOH A 65 465 465 HOH HOH . E 3 HOH A 66 466 466 HOH HOH . E 3 HOH A 67 467 467 HOH HOH . E 3 HOH A 68 468 468 HOH HOH . E 3 HOH A 69 469 469 HOH HOH . E 3 HOH A 70 470 470 HOH HOH . E 3 HOH A 71 471 471 HOH HOH . E 3 HOH A 72 472 472 HOH HOH . E 3 HOH A 73 473 473 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 85.366 _atom_site.Cartn_y 30.863 _atom_site.Cartn_z 41.595 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #