data_4WRB # _model_server_result.job_id yUJTdYvQaVqfs4eC9V94KA _model_server_result.datetime_utc '2024-11-14 20:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 4WRB # _exptl.entry_id 4WRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WRB _cell.length_a 67.294 _cell.length_b 67.896 _cell.length_c 89.633 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N ? 5 P N N ? 5 Q N N ? 5 R N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 177 n n C1 C2 GOL sing 178 n n C1 H11 GOL sing 179 n n C1 H12 GOL sing 180 n n O1 HO1 GOL sing 181 n n C2 O2 GOL sing 182 n n C2 C3 GOL sing 183 n n C2 H2 GOL sing 184 n n O2 HO2 GOL sing 185 n n C3 O3 GOL sing 186 n n C3 H31 GOL sing 187 n n C3 H32 GOL sing 188 n n O3 HO3 GOL sing 189 n n # _atom_sites.entry_id 4WRB _atom_sites.fract_transf_matrix[1][1] 0.01486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 3TW A 1 201 115 3TW 3TW . E 3 SO4 A 1 202 117 SO4 SO4 . F 3 SO4 A 1 203 121 SO4 SO4 . G 4 IPA A 1 204 129 IPA IPA . H 4 IPA A 1 205 131 IPA IPA . I 5 GOL A 1 206 136 GOL GOL . J 3 SO4 B 1 201 115 SO4 SO4 . K 5 GOL B 1 202 120 GOL GOL . L 3 SO4 B 1 203 124 SO4 SO4 . M 4 IPA B 1 204 133 IPA IPA . N 3 SO4 C 1 201 115 SO4 SO4 . O 3 SO4 C 1 202 118 SO4 SO4 . P 5 GOL C 1 203 119 GOL GOL . Q 5 GOL C 1 204 121 GOL GOL . R 5 GOL C 1 205 126 GOL GOL . S 4 IPA C 1 206 130 IPA IPA . T 6 HOH A 1 301 162 HOH HOH . T 6 HOH A 2 302 150 HOH HOH . T 6 HOH A 3 303 175 HOH HOH . T 6 HOH A 4 304 36 HOH HOH . T 6 HOH A 5 305 54 HOH HOH . T 6 HOH A 6 306 118 HOH HOH . T 6 HOH A 7 307 135 HOH HOH . T 6 HOH A 8 308 90 HOH HOH . T 6 HOH A 9 309 112 HOH HOH . T 6 HOH A 10 310 221 HOH HOH . T 6 HOH A 11 311 230 HOH HOH . T 6 HOH A 12 312 62 HOH HOH . T 6 HOH A 13 313 113 HOH HOH . T 6 HOH A 14 314 173 HOH HOH . T 6 HOH A 15 315 47 HOH HOH . T 6 HOH A 16 316 257 HOH HOH . T 6 HOH A 17 317 71 HOH HOH . T 6 HOH A 18 318 201 HOH HOH . T 6 HOH A 19 319 181 HOH HOH . T 6 HOH A 20 320 158 HOH HOH . T 6 HOH A 21 321 2 HOH HOH . T 6 HOH A 22 322 4 HOH HOH . T 6 HOH A 23 323 6 HOH HOH . T 6 HOH A 24 324 14 HOH HOH . T 6 HOH A 25 325 16 HOH HOH . T 6 HOH A 26 326 21 HOH HOH . T 6 HOH A 27 327 27 HOH HOH . T 6 HOH A 28 328 28 HOH HOH . T 6 HOH A 29 329 30 HOH HOH . T 6 HOH A 30 330 33 HOH HOH . T 6 HOH A 31 331 38 HOH HOH . T 6 HOH A 32 332 40 HOH HOH . T 6 HOH A 33 333 44 HOH HOH . T 6 HOH A 34 334 46 HOH HOH . T 6 HOH A 35 335 48 HOH HOH . T 6 HOH A 36 336 50 HOH HOH . T 6 HOH A 37 337 56 HOH HOH . T 6 HOH A 38 338 57 HOH HOH . T 6 HOH A 39 339 58 HOH HOH . T 6 HOH A 40 340 67 HOH HOH . T 6 HOH A 41 341 73 HOH HOH . T 6 HOH A 42 342 81 HOH HOH . T 6 HOH A 43 343 83 HOH HOH . T 6 HOH A 44 344 84 HOH HOH . T 6 HOH A 45 345 85 HOH HOH . T 6 HOH A 46 346 88 HOH HOH . T 6 HOH A 47 347 94 HOH HOH . T 6 HOH A 48 348 97 HOH HOH . T 6 HOH A 49 349 98 HOH HOH . T 6 HOH A 50 350 103 HOH HOH . T 6 HOH A 51 351 107 HOH HOH . T 6 HOH A 52 352 108 HOH HOH . T 6 HOH A 53 353 110 HOH HOH . T 6 HOH A 54 354 123 HOH HOH . T 6 HOH A 55 355 126 HOH HOH . T 6 HOH A 56 356 127 HOH HOH . T 6 HOH A 57 357 130 HOH HOH . T 6 HOH A 58 358 132 HOH HOH . T 6 HOH A 59 359 153 HOH HOH . T 6 HOH A 60 360 161 HOH HOH . T 6 HOH A 61 361 163 HOH HOH . T 6 HOH A 62 362 165 HOH HOH . T 6 HOH A 63 363 167 HOH HOH . T 6 HOH A 64 364 172 HOH HOH . T 6 HOH A 65 365 174 HOH HOH . T 6 HOH A 66 366 188 HOH HOH . T 6 HOH A 67 367 189 HOH HOH . T 6 HOH A 68 368 197 HOH HOH . T 6 HOH A 69 369 209 HOH HOH . T 6 HOH A 70 370 212 HOH HOH . T 6 HOH A 71 371 216 HOH HOH . T 6 HOH A 72 372 227 HOH HOH . T 6 HOH A 73 373 229 HOH HOH . T 6 HOH A 74 374 232 HOH HOH . T 6 HOH A 75 375 234 HOH HOH . T 6 HOH A 76 376 236 HOH HOH . T 6 HOH A 77 377 237 HOH HOH . T 6 HOH A 78 378 245 HOH HOH . T 6 HOH A 79 379 251 HOH HOH . T 6 HOH A 80 380 254 HOH HOH . T 6 HOH A 81 381 256 HOH HOH . T 6 HOH A 82 382 259 HOH HOH . T 6 HOH A 83 383 261 HOH HOH . U 6 HOH B 1 301 22 HOH HOH . U 6 HOH B 2 302 125 HOH HOH . U 6 HOH B 3 303 134 HOH HOH . U 6 HOH B 4 304 193 HOH HOH . U 6 HOH B 5 305 152 HOH HOH . U 6 HOH B 6 306 186 HOH HOH . U 6 HOH B 7 307 122 HOH HOH . U 6 HOH B 8 308 182 HOH HOH . U 6 HOH B 9 309 145 HOH HOH . U 6 HOH B 10 310 65 HOH HOH . U 6 HOH B 11 311 26 HOH HOH . U 6 HOH B 12 312 138 HOH HOH . U 6 HOH B 13 313 226 HOH HOH . U 6 HOH B 14 314 24 HOH HOH . U 6 HOH B 15 315 218 HOH HOH . U 6 HOH B 16 316 238 HOH HOH . U 6 HOH B 17 317 147 HOH HOH . U 6 HOH B 18 318 105 HOH HOH . U 6 HOH B 19 319 146 HOH HOH . U 6 HOH B 20 320 204 HOH HOH . U 6 HOH B 21 321 160 HOH HOH . U 6 HOH B 22 322 49 HOH HOH . U 6 HOH B 23 323 18 HOH HOH . U 6 HOH B 24 324 74 HOH HOH . U 6 HOH B 25 325 102 HOH HOH . U 6 HOH B 26 326 89 HOH HOH . U 6 HOH B 27 327 159 HOH HOH . U 6 HOH B 28 328 101 HOH HOH . U 6 HOH B 29 329 169 HOH HOH . U 6 HOH B 30 330 86 HOH HOH . U 6 HOH B 31 331 246 HOH HOH . U 6 HOH B 32 332 195 HOH HOH . U 6 HOH B 33 333 170 HOH HOH . U 6 HOH B 34 334 262 HOH HOH . U 6 HOH B 35 335 217 HOH HOH . U 6 HOH B 36 336 157 HOH HOH . U 6 HOH B 37 337 255 HOH HOH . U 6 HOH B 38 338 77 HOH HOH . U 6 HOH B 39 339 203 HOH HOH . U 6 HOH B 40 340 121 HOH HOH . U 6 HOH B 41 341 99 HOH HOH . U 6 HOH B 42 342 100 HOH HOH . U 6 HOH B 43 343 1 HOH HOH . U 6 HOH B 44 344 3 HOH HOH . U 6 HOH B 45 345 5 HOH HOH . U 6 HOH B 46 346 9 HOH HOH . U 6 HOH B 47 347 12 HOH HOH . U 6 HOH B 48 348 15 HOH HOH . U 6 HOH B 49 349 17 HOH HOH . U 6 HOH B 50 350 19 HOH HOH . U 6 HOH B 51 351 23 HOH HOH . U 6 HOH B 52 352 25 HOH HOH . U 6 HOH B 53 353 41 HOH HOH . U 6 HOH B 54 354 42 HOH HOH . U 6 HOH B 55 355 45 HOH HOH . U 6 HOH B 56 356 53 HOH HOH . U 6 HOH B 57 357 55 HOH HOH . U 6 HOH B 58 358 59 HOH HOH . U 6 HOH B 59 359 60 HOH HOH . U 6 HOH B 60 360 61 HOH HOH . U 6 HOH B 61 361 68 HOH HOH . U 6 HOH B 62 362 69 HOH HOH . U 6 HOH B 63 363 72 HOH HOH . U 6 HOH B 64 364 76 HOH HOH . U 6 HOH B 65 365 78 HOH HOH . U 6 HOH B 66 366 92 HOH HOH . U 6 HOH B 67 367 96 HOH HOH . U 6 HOH B 68 368 109 HOH HOH . U 6 HOH B 69 369 115 HOH HOH . U 6 HOH B 70 370 117 HOH HOH . U 6 HOH B 71 371 119 HOH HOH . U 6 HOH B 72 372 128 HOH HOH . U 6 HOH B 73 373 129 HOH HOH . U 6 HOH B 74 374 131 HOH HOH . U 6 HOH B 75 375 133 HOH HOH . U 6 HOH B 76 376 136 HOH HOH . U 6 HOH B 77 377 137 HOH HOH . U 6 HOH B 78 378 139 HOH HOH . U 6 HOH B 79 379 140 HOH HOH . U 6 HOH B 80 380 141 HOH HOH . U 6 HOH B 81 381 142 HOH HOH . U 6 HOH B 82 382 144 HOH HOH . U 6 HOH B 83 383 151 HOH HOH . U 6 HOH B 84 384 154 HOH HOH . U 6 HOH B 85 385 155 HOH HOH . U 6 HOH B 86 386 156 HOH HOH . U 6 HOH B 87 387 179 HOH HOH . U 6 HOH B 88 388 183 HOH HOH . U 6 HOH B 89 389 194 HOH HOH . U 6 HOH B 90 390 199 HOH HOH . U 6 HOH B 91 391 202 HOH HOH . U 6 HOH B 92 392 205 HOH HOH . U 6 HOH B 93 393 207 HOH HOH . U 6 HOH B 94 394 210 HOH HOH . U 6 HOH B 95 395 213 HOH HOH . U 6 HOH B 96 396 228 HOH HOH . U 6 HOH B 97 397 235 HOH HOH . U 6 HOH B 98 398 240 HOH HOH . U 6 HOH B 99 399 252 HOH HOH . V 6 HOH C 1 301 95 HOH HOH . V 6 HOH C 2 302 80 HOH HOH . V 6 HOH C 3 303 253 HOH HOH . V 6 HOH C 4 304 191 HOH HOH . V 6 HOH C 5 305 196 HOH HOH . V 6 HOH C 6 306 239 HOH HOH . V 6 HOH C 7 307 250 HOH HOH . V 6 HOH C 8 308 248 HOH HOH . V 6 HOH C 9 309 225 HOH HOH . V 6 HOH C 10 310 79 HOH HOH . V 6 HOH C 11 311 149 HOH HOH . V 6 HOH C 12 312 187 HOH HOH . V 6 HOH C 13 313 51 HOH HOH . V 6 HOH C 14 314 177 HOH HOH . V 6 HOH C 15 315 114 HOH HOH . V 6 HOH C 16 316 120 HOH HOH . V 6 HOH C 17 317 198 HOH HOH . V 6 HOH C 18 318 164 HOH HOH . V 6 HOH C 19 319 7 HOH HOH . V 6 HOH C 20 320 8 HOH HOH . V 6 HOH C 21 321 10 HOH HOH . V 6 HOH C 22 322 11 HOH HOH . V 6 HOH C 23 323 13 HOH HOH . V 6 HOH C 24 324 20 HOH HOH . V 6 HOH C 25 325 29 HOH HOH . V 6 HOH C 26 326 31 HOH HOH . V 6 HOH C 27 327 32 HOH HOH . V 6 HOH C 28 328 34 HOH HOH . V 6 HOH C 29 329 35 HOH HOH . V 6 HOH C 30 330 37 HOH HOH . V 6 HOH C 31 331 39 HOH HOH . V 6 HOH C 32 332 43 HOH HOH . V 6 HOH C 33 333 52 HOH HOH . V 6 HOH C 34 334 63 HOH HOH . V 6 HOH C 35 335 64 HOH HOH . V 6 HOH C 36 336 66 HOH HOH . V 6 HOH C 37 337 70 HOH HOH . V 6 HOH C 38 338 75 HOH HOH . V 6 HOH C 39 339 82 HOH HOH . V 6 HOH C 40 340 87 HOH HOH . V 6 HOH C 41 341 91 HOH HOH . V 6 HOH C 42 342 93 HOH HOH . V 6 HOH C 43 343 104 HOH HOH . V 6 HOH C 44 344 106 HOH HOH . V 6 HOH C 45 345 111 HOH HOH . V 6 HOH C 46 346 116 HOH HOH . V 6 HOH C 47 347 124 HOH HOH . V 6 HOH C 48 348 143 HOH HOH . V 6 HOH C 49 349 148 HOH HOH . V 6 HOH C 50 350 166 HOH HOH . V 6 HOH C 51 351 168 HOH HOH . V 6 HOH C 52 352 171 HOH HOH . V 6 HOH C 53 353 176 HOH HOH . V 6 HOH C 54 354 178 HOH HOH . V 6 HOH C 55 355 180 HOH HOH . V 6 HOH C 56 356 184 HOH HOH . V 6 HOH C 57 357 185 HOH HOH . V 6 HOH C 58 358 190 HOH HOH . V 6 HOH C 59 359 192 HOH HOH . V 6 HOH C 60 360 200 HOH HOH . V 6 HOH C 61 361 206 HOH HOH . V 6 HOH C 62 362 208 HOH HOH . V 6 HOH C 63 363 211 HOH HOH . V 6 HOH C 64 364 214 HOH HOH . V 6 HOH C 65 365 215 HOH HOH . V 6 HOH C 66 366 219 HOH HOH . V 6 HOH C 67 367 220 HOH HOH . V 6 HOH C 68 368 222 HOH HOH . V 6 HOH C 69 369 223 HOH HOH . V 6 HOH C 70 370 224 HOH HOH . V 6 HOH C 71 371 231 HOH HOH . V 6 HOH C 72 372 233 HOH HOH . V 6 HOH C 73 373 241 HOH HOH . V 6 HOH C 74 374 242 HOH HOH . V 6 HOH C 75 375 243 HOH HOH . V 6 HOH C 76 376 244 HOH HOH . V 6 HOH C 77 377 247 HOH HOH . V 6 HOH C 78 378 249 HOH HOH . V 6 HOH C 79 379 258 HOH HOH . V 6 HOH C 80 380 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . K 5 -33.519 -14.099 6.557 0.5 13.15 ? C1 GOL 202 B 1 HETATM 2 C C1 GOL . B . K 5 -34.268 -13.307 7.073 0.5 25.39 ? C1 GOL 202 B 1 HETATM 3 O O1 GOL . A . K 5 -34.681 -14.571 7.265 0.5 13.71 ? O1 GOL 202 B 1 HETATM 4 O O1 GOL . B . K 5 -35.512 -13.047 7.732 0.5 24.07 ? O1 GOL 202 B 1 HETATM 5 C C2 GOL . A . K 5 -32.66 -13.403 7.592 0.5 13.16 ? C2 GOL 202 B 1 HETATM 6 C C2 GOL . B . K 5 -33.085 -12.678 7.797 0.5 25.03 ? C2 GOL 202 B 1 HETATM 7 O O2 GOL . A . K 5 -32.578 -14.408 8.596 0.5 12.67 ? O2 GOL 202 B 1 HETATM 8 O O2 GOL . B . K 5 -31.968 -13.566 7.734 0.5 26.99 ? O2 GOL 202 B 1 HETATM 9 C C3 GOL . A . K 5 -31.298 -12.987 7.025 0.5 12.79 ? C3 GOL 202 B 1 HETATM 10 C C3 GOL . B . K 5 -32.68 -11.388 7.133 0.5 25.19 ? C3 GOL 202 B 1 HETATM 11 O O3 GOL . A . K 5 -30.599 -12.091 7.896 0.5 12.59 ? O3 GOL 202 B 1 HETATM 12 O O3 GOL . B . K 5 -31.25 -11.32 7.122 0.5 23.91 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #