data_4WRE # _model_server_result.job_id yyEfSj4x-1VrosTocgNluQ _model_server_result.datetime_utc '2024-11-08 01:27:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4WRE # _exptl.entry_id 4WRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WRE _cell.length_a 66.73 _cell.length_b 66.73 _cell.length_c 165.891 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -33.365 -57.789875 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 33.365 -57.789875 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A OD2 ASP 91 A ASP 171 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc2 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A OD1 ASN 117 A ASN 197 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc5 A O GLU 122 A GLU 202 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc6 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc8 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A OD2 ASP 135 A ASP 215 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc10 B CA CA . A CA 401 1_555 D O1 INS . A INS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B CA CA . A CA 401 1_555 D O6 INS . A INS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id INS _chem_comp.mon_nstd_flag . _chem_comp.name 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYO-INOSITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 INS sing 194 n n C1 C6 INS sing 195 n n C1 O1 INS sing 196 n n C1 H1 INS sing 197 n n C2 C3 INS sing 198 n n C2 O2 INS sing 199 n n C2 H2 INS sing 200 n n C3 C4 INS sing 201 n n C3 O3 INS sing 202 n n C3 H3 INS sing 203 n n C4 C5 INS sing 204 n n C4 O4 INS sing 205 n n C4 H4 INS sing 206 n n C5 C6 INS sing 207 n n C5 O5 INS sing 208 n n C5 H5 INS sing 209 n n C6 O6 INS sing 210 n n C6 H6 INS sing 211 n n O1 HO1 INS sing 212 n n O2 HO2 INS sing 213 n n O3 HO3 INS sing 214 n n O4 HO4 INS sing 215 n n O5 HO5 INS sing 216 n n O6 HO6 INS sing 217 n n # _atom_sites.entry_id 4WRE _atom_sites.fract_transf_matrix[1][1] 0.014986 _atom_sites.fract_transf_matrix[1][2] 0.008652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 3 INS A 1 403 500 INS INS . E 4 HEZ A 1 404 501 HEZ HEZ . F 5 CL A 1 405 1 CL CL . G 6 HOH A 1 501 25 HOH HOH . G 6 HOH A 2 502 51 HOH HOH . G 6 HOH A 3 503 18 HOH HOH . G 6 HOH A 4 504 68 HOH HOH . G 6 HOH A 5 505 62 HOH HOH . G 6 HOH A 6 506 46 HOH HOH . G 6 HOH A 7 507 24 HOH HOH . G 6 HOH A 8 508 3 HOH HOH . G 6 HOH A 9 509 85 HOH HOH . G 6 HOH A 10 510 29 HOH HOH . G 6 HOH A 11 511 89 HOH HOH . G 6 HOH A 12 512 37 HOH HOH . G 6 HOH A 13 513 31 HOH HOH . G 6 HOH A 14 514 12 HOH HOH . G 6 HOH A 15 515 74 HOH HOH . G 6 HOH A 16 516 38 HOH HOH . G 6 HOH A 17 517 47 HOH HOH . G 6 HOH A 18 518 34 HOH HOH . G 6 HOH A 19 519 42 HOH HOH . G 6 HOH A 20 520 78 HOH HOH . G 6 HOH A 21 521 92 HOH HOH . G 6 HOH A 22 522 7 HOH HOH . G 6 HOH A 23 523 20 HOH HOH . G 6 HOH A 24 524 81 HOH HOH . G 6 HOH A 25 525 32 HOH HOH . G 6 HOH A 26 526 14 HOH HOH . G 6 HOH A 27 527 59 HOH HOH . G 6 HOH A 28 528 41 HOH HOH . G 6 HOH A 29 529 61 HOH HOH . G 6 HOH A 30 530 15 HOH HOH . G 6 HOH A 31 531 36 HOH HOH . G 6 HOH A 32 532 72 HOH HOH . G 6 HOH A 33 533 10 HOH HOH . G 6 HOH A 34 534 23 HOH HOH . G 6 HOH A 35 535 11 HOH HOH . G 6 HOH A 36 536 19 HOH HOH . G 6 HOH A 37 537 57 HOH HOH . G 6 HOH A 38 538 80 HOH HOH . G 6 HOH A 39 539 94 HOH HOH . G 6 HOH A 40 540 64 HOH HOH . G 6 HOH A 41 541 9 HOH HOH . G 6 HOH A 42 542 93 HOH HOH . G 6 HOH A 43 543 104 HOH HOH . G 6 HOH A 44 544 26 HOH HOH . G 6 HOH A 45 545 84 HOH HOH . G 6 HOH A 46 546 63 HOH HOH . G 6 HOH A 47 547 77 HOH HOH . G 6 HOH A 48 548 39 HOH HOH . G 6 HOH A 49 549 79 HOH HOH . G 6 HOH A 50 550 95 HOH HOH . G 6 HOH A 51 551 28 HOH HOH . G 6 HOH A 52 552 88 HOH HOH . G 6 HOH A 53 553 69 HOH HOH . G 6 HOH A 54 554 2 HOH HOH . G 6 HOH A 55 555 4 HOH HOH . G 6 HOH A 56 556 6 HOH HOH . G 6 HOH A 57 557 8 HOH HOH . G 6 HOH A 58 558 13 HOH HOH . G 6 HOH A 59 559 17 HOH HOH . G 6 HOH A 60 560 21 HOH HOH . G 6 HOH A 61 561 22 HOH HOH . G 6 HOH A 62 562 27 HOH HOH . G 6 HOH A 63 563 30 HOH HOH . G 6 HOH A 64 564 33 HOH HOH . G 6 HOH A 65 565 35 HOH HOH . G 6 HOH A 66 566 40 HOH HOH . G 6 HOH A 67 567 43 HOH HOH . G 6 HOH A 68 568 44 HOH HOH . G 6 HOH A 69 569 48 HOH HOH . G 6 HOH A 70 570 49 HOH HOH . G 6 HOH A 71 571 52 HOH HOH . G 6 HOH A 72 572 54 HOH HOH . G 6 HOH A 73 573 55 HOH HOH . G 6 HOH A 74 574 56 HOH HOH . G 6 HOH A 75 575 58 HOH HOH . G 6 HOH A 76 576 60 HOH HOH . G 6 HOH A 77 577 65 HOH HOH . G 6 HOH A 78 578 66 HOH HOH . G 6 HOH A 79 579 67 HOH HOH . G 6 HOH A 80 580 76 HOH HOH . G 6 HOH A 81 581 83 HOH HOH . G 6 HOH A 82 582 90 HOH HOH . G 6 HOH A 83 583 101 HOH HOH . G 6 HOH A 84 584 102 HOH HOH . G 6 HOH A 85 585 103 HOH HOH . G 6 HOH A 86 586 105 HOH HOH . G 6 HOH A 87 587 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 INS . . . D 3 -21.92 -13.563 1.972 1 14.52 ? C1 INS 403 A 1 HETATM 2 C C2 INS . . . D 3 -21.855 -14.519 0.827 1 18.74 ? C2 INS 403 A 1 HETATM 3 C C3 INS . . . D 3 -21.754 -13.86 -0.507 1 22.05 ? C3 INS 403 A 1 HETATM 4 C C4 INS . . . D 3 -20.656 -12.851 -0.505 1 24.62 ? C4 INS 403 A 1 HETATM 5 C C5 INS . . . D 3 -20.806 -11.845 0.588 1 22.14 ? C5 INS 403 A 1 HETATM 6 C C6 INS . . . D 3 -20.854 -12.523 1.929 1 15.29 ? C6 INS 403 A 1 HETATM 7 O O1 INS . . . D 3 -21.825 -14.213 3.201 1 14.02 ? O1 INS 403 A 1 HETATM 8 O O2 INS . . . D 3 -20.804 -15.395 0.966 1 20.53 ? O2 INS 403 A 1 HETATM 9 O O3 INS . . . D 3 -21.435 -14.832 -1.438 1 26.75 ? O3 INS 403 A 1 HETATM 10 O O4 INS . . . D 3 -20.524 -12.263 -1.753 1 27.02 ? O4 INS 403 A 1 HETATM 11 O O5 INS . . . D 3 -19.792 -10.903 0.541 1 24.1 ? O5 INS 403 A 1 HETATM 12 O O6 INS . . . D 3 -21.148 -11.616 2.927 1 15.36 ? O6 INS 403 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #