data_4WRF # _model_server_result.job_id dcNYY22hMTMzmbfIT_USGA _model_server_result.datetime_utc '2024-11-20 03:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WRF # _exptl.entry_id 4WRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WRF _cell.length_a 69.157 _cell.length_b 69.157 _cell.length_c 169.566 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -34.5785 -59.891719 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 34.5785 -59.891719 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OD1 ASP 91 A ASP 171 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 A OD2 ASP 91 A ASP 171 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A OE1 GLU 95 A GLU 175 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A OE2 GLU 95 A GLU 175 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc6 A OD1 ASN 117 A ASN 197 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A O GLY 120 A GLY 200 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc9 A O GLU 122 A GLU 202 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc10 A OD1 ASP 123 A ASP 203 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc11 A OD1 ASP 123 A ASP 203 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc12 A OD2 ASP 123 A ASP 203 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc15 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc16 B CA CA . A CA 401 1_555 E O3 MAN . A MAN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc17 B CA CA . A CA 401 1_555 E O4 MAN . A MAN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc18 C CA CA . A CA 402 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc19 C CA CA . A CA 402 1_555 H O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc20 D CA CA . A CA 403 1_555 H O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WRF _atom_sites.fract_transf_matrix[1][1] 0.01446 _atom_sites.fract_transf_matrix[1][2] 0.008348 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 3 MAN A 1 404 501 MAN MAN . F 4 HEZ A 1 405 502 HEZ HEZ . G 5 CL A 1 406 1 CL CL . H 6 HOH A 1 501 73 HOH HOH . H 6 HOH A 2 502 75 HOH HOH . H 6 HOH A 3 503 74 HOH HOH . H 6 HOH A 4 504 80 HOH HOH . H 6 HOH A 5 505 124 HOH HOH . H 6 HOH A 6 506 56 HOH HOH . H 6 HOH A 7 507 101 HOH HOH . H 6 HOH A 8 508 22 HOH HOH . H 6 HOH A 9 509 6 HOH HOH . H 6 HOH A 10 510 36 HOH HOH . H 6 HOH A 11 511 81 HOH HOH . H 6 HOH A 12 512 57 HOH HOH . H 6 HOH A 13 513 123 HOH HOH . H 6 HOH A 14 514 44 HOH HOH . H 6 HOH A 15 515 21 HOH HOH . H 6 HOH A 16 516 62 HOH HOH . H 6 HOH A 17 517 136 HOH HOH . H 6 HOH A 18 518 137 HOH HOH . H 6 HOH A 19 519 66 HOH HOH . H 6 HOH A 20 520 52 HOH HOH . H 6 HOH A 21 521 53 HOH HOH . H 6 HOH A 22 522 69 HOH HOH . H 6 HOH A 23 523 14 HOH HOH . H 6 HOH A 24 524 31 HOH HOH . H 6 HOH A 25 525 17 HOH HOH . H 6 HOH A 26 526 28 HOH HOH . H 6 HOH A 27 527 106 HOH HOH . H 6 HOH A 28 528 116 HOH HOH . H 6 HOH A 29 529 46 HOH HOH . H 6 HOH A 30 530 67 HOH HOH . H 6 HOH A 31 531 117 HOH HOH . H 6 HOH A 32 532 138 HOH HOH . H 6 HOH A 33 533 34 HOH HOH . H 6 HOH A 34 534 42 HOH HOH . H 6 HOH A 35 535 15 HOH HOH . H 6 HOH A 36 536 40 HOH HOH . H 6 HOH A 37 537 33 HOH HOH . H 6 HOH A 38 538 58 HOH HOH . H 6 HOH A 39 539 54 HOH HOH . H 6 HOH A 40 540 48 HOH HOH . H 6 HOH A 41 541 72 HOH HOH . H 6 HOH A 42 542 97 HOH HOH . H 6 HOH A 43 543 83 HOH HOH . H 6 HOH A 44 544 135 HOH HOH . H 6 HOH A 45 545 78 HOH HOH . H 6 HOH A 46 546 129 HOH HOH . H 6 HOH A 47 547 133 HOH HOH . H 6 HOH A 48 548 102 HOH HOH . H 6 HOH A 49 549 132 HOH HOH . H 6 HOH A 50 550 95 HOH HOH . H 6 HOH A 51 551 89 HOH HOH . H 6 HOH A 52 552 120 HOH HOH . H 6 HOH A 53 553 118 HOH HOH . H 6 HOH A 54 554 68 HOH HOH . H 6 HOH A 55 555 93 HOH HOH . H 6 HOH A 56 556 126 HOH HOH . H 6 HOH A 57 557 134 HOH HOH . H 6 HOH A 58 558 85 HOH HOH . H 6 HOH A 59 559 131 HOH HOH . H 6 HOH A 60 560 109 HOH HOH . H 6 HOH A 61 561 125 HOH HOH . H 6 HOH A 62 562 3 HOH HOH . H 6 HOH A 63 563 5 HOH HOH . H 6 HOH A 64 564 8 HOH HOH . H 6 HOH A 65 565 9 HOH HOH . H 6 HOH A 66 566 10 HOH HOH . H 6 HOH A 67 567 11 HOH HOH . H 6 HOH A 68 568 12 HOH HOH . H 6 HOH A 69 569 13 HOH HOH . H 6 HOH A 70 570 16 HOH HOH . H 6 HOH A 71 571 24 HOH HOH . H 6 HOH A 72 572 25 HOH HOH . H 6 HOH A 73 573 26 HOH HOH . H 6 HOH A 74 574 27 HOH HOH . H 6 HOH A 75 575 29 HOH HOH . H 6 HOH A 76 576 30 HOH HOH . H 6 HOH A 77 577 32 HOH HOH . H 6 HOH A 78 578 35 HOH HOH . H 6 HOH A 79 579 38 HOH HOH . H 6 HOH A 80 580 39 HOH HOH . H 6 HOH A 81 581 45 HOH HOH . H 6 HOH A 82 582 47 HOH HOH . H 6 HOH A 83 583 49 HOH HOH . H 6 HOH A 84 584 51 HOH HOH . H 6 HOH A 85 585 55 HOH HOH . H 6 HOH A 86 586 59 HOH HOH . H 6 HOH A 87 587 61 HOH HOH . H 6 HOH A 88 588 63 HOH HOH . H 6 HOH A 89 589 64 HOH HOH . H 6 HOH A 90 590 65 HOH HOH . H 6 HOH A 91 591 70 HOH HOH . H 6 HOH A 92 592 76 HOH HOH . H 6 HOH A 93 593 77 HOH HOH . H 6 HOH A 94 594 79 HOH HOH . H 6 HOH A 95 595 86 HOH HOH . H 6 HOH A 96 596 91 HOH HOH . H 6 HOH A 97 597 92 HOH HOH . H 6 HOH A 98 598 103 HOH HOH . H 6 HOH A 99 599 105 HOH HOH . H 6 HOH A 100 600 108 HOH HOH . H 6 HOH A 101 601 111 HOH HOH . H 6 HOH A 102 602 113 HOH HOH . H 6 HOH A 103 603 115 HOH HOH . H 6 HOH A 104 604 119 HOH HOH . H 6 HOH A 105 605 121 HOH HOH . H 6 HOH A 106 606 122 HOH HOH . H 6 HOH A 107 607 128 HOH HOH . H 6 HOH A 108 608 139 HOH HOH . H 6 HOH A 109 609 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.408 _atom_site.Cartn_y -12.493 _atom_site.Cartn_z 5.866 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.04 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #