data_4WRF
#
_model_server_result.job_id            K6I8Iw6jJ_IACS1mPlI1-Q 
_model_server_result.datetime_utc      '2024-11-20 03:42:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    4WRF 
#
_exptl.entry_id    4WRF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WRF 
_cell.length_a            69.157 
_cell.length_b            69.157 
_cell.length_c            169.566 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -34.5785 -59.891719 0 
3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 34.5785 -59.891719 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A OD1 ASP 91 A ASP 171 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc2 A OD2 ASP 91 A ASP 171 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 A OE1 GLU 95 A GLU 175 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 A OE2 GLU 95 A GLU 175 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc5 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc6 A OD1 ASN 117 A ASN 197 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc7 A O GLY 120 A GLY 200 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc8 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc9 A O GLU 122 A GLU 202 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc10 A OD1 ASP 123 A ASP 203 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? 
metalc ? metalc11 A OD1 ASP 123 A ASP 203 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc12 A OD2 ASP 123 A ASP 203 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc13 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc14 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc15 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc16 B CA CA . A CA 401 1_555 E O3 MAN . A MAN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc17 B CA CA . A CA 401 1_555 E O4 MAN . A MAN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc18 C CA CA . A CA 402 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc19 C CA CA . A CA 402 1_555 H O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc20 D CA CA . A CA 403 1_555 H O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 239 n n 
C1 O1 MAN sing 240 n n 
C1 O5 MAN sing 241 n n 
C1 H1 MAN sing 242 n n 
C2 C3 MAN sing 243 n n 
C2 O2 MAN sing 244 n n 
C2 H2 MAN sing 245 n n 
C3 C4 MAN sing 246 n n 
C3 O3 MAN sing 247 n n 
C3 H3 MAN sing 248 n n 
C4 C5 MAN sing 249 n n 
C4 O4 MAN sing 250 n n 
C4 H4 MAN sing 251 n n 
C5 C6 MAN sing 252 n n 
C5 O5 MAN sing 253 n n 
C5 H5 MAN sing 254 n n 
C6 O6 MAN sing 255 n n 
C6 H61 MAN sing 256 n n 
C6 H62 MAN sing 257 n n 
O1 HO1 MAN sing 258 n n 
O2 HO2 MAN sing 259 n n 
O3 HO3 MAN sing 260 n n 
O4 HO4 MAN sing 261 n n 
O6 HO6 MAN sing 262 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4WRF 
_atom_sites.fract_transf_matrix[1][1]    0.01446 
_atom_sites.fract_transf_matrix[1][2]    0.008348 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 401 401 CA CA . 
C 2 CA A 1 402 402 CA CA . 
D 2 CA A 1 403 403 CA CA . 
E 3 MAN A 1 404 501 MAN MAN . 
F 4 HEZ A 1 405 502 HEZ HEZ . 
G 5 CL A 1 406 1 CL CL . 
H 6 HOH A 1 501 73 HOH HOH . 
H 6 HOH A 2 502 75 HOH HOH . 
H 6 HOH A 3 503 74 HOH HOH . 
H 6 HOH A 4 504 80 HOH HOH . 
H 6 HOH A 5 505 124 HOH HOH . 
H 6 HOH A 6 506 56 HOH HOH . 
H 6 HOH A 7 507 101 HOH HOH . 
H 6 HOH A 8 508 22 HOH HOH . 
H 6 HOH A 9 509 6 HOH HOH . 
H 6 HOH A 10 510 36 HOH HOH . 
H 6 HOH A 11 511 81 HOH HOH . 
H 6 HOH A 12 512 57 HOH HOH . 
H 6 HOH A 13 513 123 HOH HOH . 
H 6 HOH A 14 514 44 HOH HOH . 
H 6 HOH A 15 515 21 HOH HOH . 
H 6 HOH A 16 516 62 HOH HOH . 
H 6 HOH A 17 517 136 HOH HOH . 
H 6 HOH A 18 518 137 HOH HOH . 
H 6 HOH A 19 519 66 HOH HOH . 
H 6 HOH A 20 520 52 HOH HOH . 
H 6 HOH A 21 521 53 HOH HOH . 
H 6 HOH A 22 522 69 HOH HOH . 
H 6 HOH A 23 523 14 HOH HOH . 
H 6 HOH A 24 524 31 HOH HOH . 
H 6 HOH A 25 525 17 HOH HOH . 
H 6 HOH A 26 526 28 HOH HOH . 
H 6 HOH A 27 527 106 HOH HOH . 
H 6 HOH A 28 528 116 HOH HOH . 
H 6 HOH A 29 529 46 HOH HOH . 
H 6 HOH A 30 530 67 HOH HOH . 
H 6 HOH A 31 531 117 HOH HOH . 
H 6 HOH A 32 532 138 HOH HOH . 
H 6 HOH A 33 533 34 HOH HOH . 
H 6 HOH A 34 534 42 HOH HOH . 
H 6 HOH A 35 535 15 HOH HOH . 
H 6 HOH A 36 536 40 HOH HOH . 
H 6 HOH A 37 537 33 HOH HOH . 
H 6 HOH A 38 538 58 HOH HOH . 
H 6 HOH A 39 539 54 HOH HOH . 
H 6 HOH A 40 540 48 HOH HOH . 
H 6 HOH A 41 541 72 HOH HOH . 
H 6 HOH A 42 542 97 HOH HOH . 
H 6 HOH A 43 543 83 HOH HOH . 
H 6 HOH A 44 544 135 HOH HOH . 
H 6 HOH A 45 545 78 HOH HOH . 
H 6 HOH A 46 546 129 HOH HOH . 
H 6 HOH A 47 547 133 HOH HOH . 
H 6 HOH A 48 548 102 HOH HOH . 
H 6 HOH A 49 549 132 HOH HOH . 
H 6 HOH A 50 550 95 HOH HOH . 
H 6 HOH A 51 551 89 HOH HOH . 
H 6 HOH A 52 552 120 HOH HOH . 
H 6 HOH A 53 553 118 HOH HOH . 
H 6 HOH A 54 554 68 HOH HOH . 
H 6 HOH A 55 555 93 HOH HOH . 
H 6 HOH A 56 556 126 HOH HOH . 
H 6 HOH A 57 557 134 HOH HOH . 
H 6 HOH A 58 558 85 HOH HOH . 
H 6 HOH A 59 559 131 HOH HOH . 
H 6 HOH A 60 560 109 HOH HOH . 
H 6 HOH A 61 561 125 HOH HOH . 
H 6 HOH A 62 562 3 HOH HOH . 
H 6 HOH A 63 563 5 HOH HOH . 
H 6 HOH A 64 564 8 HOH HOH . 
H 6 HOH A 65 565 9 HOH HOH . 
H 6 HOH A 66 566 10 HOH HOH . 
H 6 HOH A 67 567 11 HOH HOH . 
H 6 HOH A 68 568 12 HOH HOH . 
H 6 HOH A 69 569 13 HOH HOH . 
H 6 HOH A 70 570 16 HOH HOH . 
H 6 HOH A 71 571 24 HOH HOH . 
H 6 HOH A 72 572 25 HOH HOH . 
H 6 HOH A 73 573 26 HOH HOH . 
H 6 HOH A 74 574 27 HOH HOH . 
H 6 HOH A 75 575 29 HOH HOH . 
H 6 HOH A 76 576 30 HOH HOH . 
H 6 HOH A 77 577 32 HOH HOH . 
H 6 HOH A 78 578 35 HOH HOH . 
H 6 HOH A 79 579 38 HOH HOH . 
H 6 HOH A 80 580 39 HOH HOH . 
H 6 HOH A 81 581 45 HOH HOH . 
H 6 HOH A 82 582 47 HOH HOH . 
H 6 HOH A 83 583 49 HOH HOH . 
H 6 HOH A 84 584 51 HOH HOH . 
H 6 HOH A 85 585 55 HOH HOH . 
H 6 HOH A 86 586 59 HOH HOH . 
H 6 HOH A 87 587 61 HOH HOH . 
H 6 HOH A 88 588 63 HOH HOH . 
H 6 HOH A 89 589 64 HOH HOH . 
H 6 HOH A 90 590 65 HOH HOH . 
H 6 HOH A 91 591 70 HOH HOH . 
H 6 HOH A 92 592 76 HOH HOH . 
H 6 HOH A 93 593 77 HOH HOH . 
H 6 HOH A 94 594 79 HOH HOH . 
H 6 HOH A 95 595 86 HOH HOH . 
H 6 HOH A 96 596 91 HOH HOH . 
H 6 HOH A 97 597 92 HOH HOH . 
H 6 HOH A 98 598 103 HOH HOH . 
H 6 HOH A 99 599 105 HOH HOH . 
H 6 HOH A 100 600 108 HOH HOH . 
H 6 HOH A 101 601 111 HOH HOH . 
H 6 HOH A 102 602 113 HOH HOH . 
H 6 HOH A 103 603 115 HOH HOH . 
H 6 HOH A 104 604 119 HOH HOH . 
H 6 HOH A 105 605 121 HOH HOH . 
H 6 HOH A 106 606 122 HOH HOH . 
H 6 HOH A 107 607 128 HOH HOH . 
H 6 HOH A 108 608 139 HOH HOH . 
H 6 HOH A 109 609 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . E 3 -21.348 -13.321 0.179 1 37.81 ? C1 MAN 404 A 1 
HETATM 2 C C2 MAN . . . E 3 -21.518 -14.127 1.47 1 36.13 ? C2 MAN 404 A 1 
HETATM 3 C C3 MAN . . . E 3 -21.5 -13.21 2.669 1 34.88 ? C3 MAN 404 A 1 
HETATM 4 C C4 MAN . . . E 3 -20.293 -12.267 2.645 1 34.02 ? C4 MAN 404 A 1 
HETATM 5 C C5 MAN . . . E 3 -20.142 -11.549 1.27 1 40.91 ? C5 MAN 404 A 1 
HETATM 6 C C6 MAN . . . E 3 -18.798 -10.875 1.13 1 42.57 ? C6 MAN 404 A 1 
HETATM 7 O O1 MAN . . . E 3 -22.547 -12.594 -0.011 1 37.92 ? O1 MAN 404 A 1 
HETATM 8 O O2 MAN . . . E 3 -20.407 -15.015 1.69 1 36.04 ? O2 MAN 404 A 1 
HETATM 9 O O3 MAN . . . E 3 -21.483 -13.98 3.878 1 33.72 ? O3 MAN 404 A 1 
HETATM 10 O O4 MAN . . . E 3 -20.477 -11.286 3.638 1 33.27 ? O4 MAN 404 A 1 
HETATM 11 O O5 MAN . . . E 3 -20.219 -12.498 0.196 1 39.34 ? O5 MAN 404 A 1 
HETATM 12 O O6 MAN . . . E 3 -18.95 -9.74 0.282 1 45.16 ? O6 MAN 404 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           12 
#