data_4WRN # _model_server_result.job_id 0r11lEBJ2Ujji-7p4ee0pg _model_server_result.datetime_utc '2025-01-13 16:58:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wrn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":803}' # _entry.id 4WRN # _exptl.entry_id 4WRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WRN _cell.length_a 242.32 _cell.length_b 242.32 _cell.length_c 258.86 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 900 MAL 2 n C GLC 2 C 2 GLC A 900 MAL 2 n D GLC 1 D 1 GLC B 900 MAL 2 n D GLC 2 D 2 GLC B 900 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 382 A CYS 397 1_555 A SG CYS 391 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 385 A CYS 400 1_555 A SG CYS 400 A CYS 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 402 A CYS 417 1_555 A SG CYS 432 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 420 A CYS 435 1_555 A SG CYS 510 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 451 A CYS 466 1_555 A SG CYS 474 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 591 A CYS 606 1_555 A SG CYS 651 A CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 612 A CYS 627 1_555 A SG CYS 667 A CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 656 A CYS 671 1_555 A SG CYS 663 A CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 420 B CYS 435 1_555 B SG CYS 510 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 451 B CYS 466 1_555 B SG CYS 474 B CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 591 B CYS 606 1_555 B SG CYS 651 B CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 B SG CYS 612 B CYS 627 1_555 B SG CYS 667 B CYS 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 B SG CYS 656 B CYS 671 1_555 B SG CYS 663 B CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 407 A ASN 422 1_555 F C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 481 A ASN 496 1_555 E C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 481 B ASN 496 1_555 I C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing covale ? covale5 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 sing metalc ? metalc1 A NE2 HIS 5 A HIS 20 1_555 G ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc2 A NE2 HIS 8 A HIS 23 1_555 H ZN ZN . B ZN 801 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A NE2 HIS 9 A HIS 24 1_555 G ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A OE1 GLU 287 A GLU 302 1_555 G ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc5 A OE2 GLU 287 A GLU 302 1_555 G ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 B NE2 HIS 5 B HIS 20 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 B NE2 HIS 9 B HIS 24 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 B OE1 GLU 287 B GLU 302 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 B OE2 GLU 287 B GLU 302 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4WRN _atom_sites.fract_transf_matrix[1][1] 0.004127 _atom_sites.fract_transf_matrix[1][2] 0.002383 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 802 1000 NAG NAG . F 3 NAG A 1 803 2000 NAG NAG . G 4 ZN A 1 804 3000 ZN ZN . H 4 ZN B 1 801 3000 ZN ZN . I 3 NAG B 1 803 1000 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 0.031 83.111 21.5 1 221.22 ? C1 NAG 803 A 1 HETATM 2 C C2 NAG . . . F 3 -1.04 84.2 21.414 1 222.22 ? C2 NAG 803 A 1 HETATM 3 C C3 NAG . . . F 3 -2.195 83.862 22.35 1 220.59 ? C3 NAG 803 A 1 HETATM 4 C C4 NAG . . . F 3 -1.672 83.242 23.636 1 220.38 ? C4 NAG 803 A 1 HETATM 5 C C5 NAG . . . F 3 -0.955 81.926 23.34 1 218.46 ? C5 NAG 803 A 1 HETATM 6 C C6 NAG . . . F 3 -1.818 80.71 23.589 1 215.37 ? C6 NAG 803 A 1 HETATM 7 C C7 NAG . . . F 3 -1.172 86.648 21.646 1 227.43 ? C7 NAG 803 A 1 HETATM 8 C C8 NAG . . . F 3 -0.431 87.893 22.033 1 231.24 ? C8 NAG 803 A 1 HETATM 9 N N2 NAG . . . F 3 -0.483 85.501 21.742 1 225.72 ? N2 NAG 803 A 1 HETATM 10 O O3 NAG . . . F 3 -3.095 82.968 21.701 1 217.71 ? O3 NAG 803 A 1 HETATM 11 O O4 NAG . . . F 3 -0.758 84.133 24.27 1 223.5 ? O4 NAG 803 A 1 HETATM 12 O O5 NAG . . . F 3 -0.562 81.887 21.96 1 218.26 ? O5 NAG 803 A 1 HETATM 13 O O6 NAG . . . F 3 -2.895 80.634 22.664 1 213.78 ? O6 NAG 803 A 1 HETATM 14 O O7 NAG . . . F 3 -2.338 86.676 21.266 1 226.13 ? O7 NAG 803 A 1 HETATM 15 H H2 NAG . . . F 3 -1.383 84.226 20.501 1 114.72 ? H2 NAG 803 A 1 HETATM 16 H H3 NAG . . . F 3 -2.673 84.684 22.57 1 114.72 ? H3 NAG 803 A 1 HETATM 17 H H4 NAG . . . F 3 -2.421 83.07 24.238 1 114.72 ? H4 NAG 803 A 1 HETATM 18 H H61 NAG . . . F 3 -2.179 80.755 24.494 1 114.72 ? H61 NAG 803 A 1 HETATM 19 H H62 NAG . . . F 3 -1.27 79.907 23.504 1 114.72 ? H62 NAG 803 A 1 HETATM 20 H H81 NAG . . . F 3 0.373 87.976 21.487 1 114.72 ? H81 NAG 803 A 1 HETATM 21 H H82 NAG . . . F 3 -0.181 87.843 22.975 1 114.72 ? H82 NAG 803 A 1 HETATM 22 H H83 NAG . . . F 3 -1.004 88.67 21.89 1 114.72 ? H83 NAG 803 A 1 HETATM 23 H HN2 NAG . . . F 3 0.381 85.539 22.033 1 114.72 ? HN2 NAG 803 A 1 HETATM 24 H HO3 NAG . . . F 3 -3.77 82.779 22.246 1 114.72 ? HO3 NAG 803 A 1 HETATM 25 H HO4 NAG . . . F 3 -0.386 83.73 24.968 1 114.72 ? HO4 NAG 803 A 1 HETATM 26 H HO6 NAG . . . F 3 -3.373 79.903 22.825 1 114.72 ? HO6 NAG 803 A 1 # _model_server_stats.io_time_ms 139 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #