data_4WRU # _model_server_result.job_id Ia5csvvFTU_CgXfudav26w _model_server_result.datetime_utc '2024-10-19 02:18:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WRU # _exptl.entry_id 4WRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.95 _cell.angle_gamma 90 _cell.entry_id 4WRU _cell.length_a 68.5 _cell.length_b 43.65 _cell.length_c 67.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 371 n n N1 C6 URA sing 372 n n N1 HN1 URA sing 373 n n C2 O2 URA doub 374 n n C2 N3 URA sing 375 n n N3 C4 URA sing 376 n n N3 HN3 URA sing 377 n n C4 O4 URA doub 378 n n C4 C5 URA sing 379 n n C5 C6 URA doub 380 n n C5 H5 URA sing 381 n n C6 H6 URA sing 382 n n # _atom_sites.entry_id 4WRU _atom_sites.fract_transf_matrix[1][1] 0.014599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002299 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URA A 1 301 1 URA URA . C 3 CL A 1 302 1 CL CL . D 4 GOL A 1 303 1 GOL GOL . E 5 HOH A 1 401 145 HOH HOH . E 5 HOH A 2 402 55 HOH HOH . E 5 HOH A 3 403 104 HOH HOH . E 5 HOH A 4 404 61 HOH HOH . E 5 HOH A 5 405 91 HOH HOH . E 5 HOH A 6 406 43 HOH HOH . E 5 HOH A 7 407 146 HOH HOH . E 5 HOH A 8 408 38 HOH HOH . E 5 HOH A 9 409 10 HOH HOH . E 5 HOH A 10 410 68 HOH HOH . E 5 HOH A 11 411 130 HOH HOH . E 5 HOH A 12 412 157 HOH HOH . E 5 HOH A 13 413 92 HOH HOH . E 5 HOH A 14 414 52 HOH HOH . E 5 HOH A 15 415 28 HOH HOH . E 5 HOH A 16 416 214 HOH HOH . E 5 HOH A 17 417 132 HOH HOH . E 5 HOH A 18 418 56 HOH HOH . E 5 HOH A 19 419 108 HOH HOH . E 5 HOH A 20 420 30 HOH HOH . E 5 HOH A 21 421 179 HOH HOH . E 5 HOH A 22 422 35 HOH HOH . E 5 HOH A 23 423 236 HOH HOH . E 5 HOH A 24 424 113 HOH HOH . E 5 HOH A 25 425 62 HOH HOH . E 5 HOH A 26 426 65 HOH HOH . E 5 HOH A 27 427 70 HOH HOH . E 5 HOH A 28 428 36 HOH HOH . E 5 HOH A 29 429 194 HOH HOH . E 5 HOH A 30 430 23 HOH HOH . E 5 HOH A 31 431 34 HOH HOH . E 5 HOH A 32 432 42 HOH HOH . E 5 HOH A 33 433 75 HOH HOH . E 5 HOH A 34 434 74 HOH HOH . E 5 HOH A 35 435 138 HOH HOH . E 5 HOH A 36 436 111 HOH HOH . E 5 HOH A 37 437 82 HOH HOH . E 5 HOH A 38 438 37 HOH HOH . E 5 HOH A 39 439 127 HOH HOH . E 5 HOH A 40 440 141 HOH HOH . E 5 HOH A 41 441 72 HOH HOH . E 5 HOH A 42 442 76 HOH HOH . E 5 HOH A 43 443 51 HOH HOH . E 5 HOH A 44 444 172 HOH HOH . E 5 HOH A 45 445 84 HOH HOH . E 5 HOH A 46 446 90 HOH HOH . E 5 HOH A 47 447 16 HOH HOH . E 5 HOH A 48 448 17 HOH HOH . E 5 HOH A 49 449 95 HOH HOH . E 5 HOH A 50 450 26 HOH HOH . E 5 HOH A 51 451 47 HOH HOH . E 5 HOH A 52 452 60 HOH HOH . E 5 HOH A 53 453 206 HOH HOH . E 5 HOH A 54 454 158 HOH HOH . E 5 HOH A 55 455 13 HOH HOH . E 5 HOH A 56 456 125 HOH HOH . E 5 HOH A 57 457 110 HOH HOH . E 5 HOH A 58 458 219 HOH HOH . E 5 HOH A 59 459 39 HOH HOH . E 5 HOH A 60 460 19 HOH HOH . E 5 HOH A 61 461 49 HOH HOH . E 5 HOH A 62 462 224 HOH HOH . E 5 HOH A 63 463 14 HOH HOH . E 5 HOH A 64 464 227 HOH HOH . E 5 HOH A 65 465 250 HOH HOH . E 5 HOH A 66 466 41 HOH HOH . E 5 HOH A 67 467 154 HOH HOH . E 5 HOH A 68 468 79 HOH HOH . E 5 HOH A 69 469 63 HOH HOH . E 5 HOH A 70 470 247 HOH HOH . E 5 HOH A 71 471 87 HOH HOH . E 5 HOH A 72 472 221 HOH HOH . E 5 HOH A 73 473 192 HOH HOH . E 5 HOH A 74 474 66 HOH HOH . E 5 HOH A 75 475 101 HOH HOH . E 5 HOH A 76 476 85 HOH HOH . E 5 HOH A 77 477 207 HOH HOH . E 5 HOH A 78 478 44 HOH HOH . E 5 HOH A 79 479 198 HOH HOH . E 5 HOH A 80 480 184 HOH HOH . E 5 HOH A 81 481 133 HOH HOH . E 5 HOH A 82 482 201 HOH HOH . E 5 HOH A 83 483 118 HOH HOH . E 5 HOH A 84 484 232 HOH HOH . E 5 HOH A 85 485 204 HOH HOH . E 5 HOH A 86 486 81 HOH HOH . E 5 HOH A 87 487 193 HOH HOH . E 5 HOH A 88 488 167 HOH HOH . E 5 HOH A 89 489 229 HOH HOH . E 5 HOH A 90 490 233 HOH HOH . E 5 HOH A 91 491 148 HOH HOH . E 5 HOH A 92 492 199 HOH HOH . E 5 HOH A 93 493 197 HOH HOH . E 5 HOH A 94 494 240 HOH HOH . E 5 HOH A 95 495 67 HOH HOH . E 5 HOH A 96 496 181 HOH HOH . E 5 HOH A 97 497 112 HOH HOH . E 5 HOH A 98 498 246 HOH HOH . E 5 HOH A 99 499 252 HOH HOH . E 5 HOH A 100 500 241 HOH HOH . E 5 HOH A 101 501 223 HOH HOH . E 5 HOH A 102 502 245 HOH HOH . E 5 HOH A 103 503 248 HOH HOH . E 5 HOH A 104 504 93 HOH HOH . E 5 HOH A 105 505 53 HOH HOH . E 5 HOH A 106 506 217 HOH HOH . E 5 HOH A 107 507 251 HOH HOH . E 5 HOH A 108 508 249 HOH HOH . E 5 HOH A 109 509 161 HOH HOH . E 5 HOH A 110 510 243 HOH HOH . E 5 HOH A 111 511 225 HOH HOH . E 5 HOH A 112 512 235 HOH HOH . E 5 HOH A 113 513 123 HOH HOH . E 5 HOH A 114 514 120 HOH HOH . E 5 HOH A 115 515 155 HOH HOH . E 5 HOH A 116 516 102 HOH HOH . E 5 HOH A 117 517 149 HOH HOH . E 5 HOH A 118 518 106 HOH HOH . E 5 HOH A 119 519 176 HOH HOH . E 5 HOH A 120 520 177 HOH HOH . E 5 HOH A 121 521 165 HOH HOH . E 5 HOH A 122 522 150 HOH HOH . E 5 HOH A 123 523 253 HOH HOH . E 5 HOH A 124 524 1 HOH HOH . E 5 HOH A 125 525 2 HOH HOH . E 5 HOH A 126 526 3 HOH HOH . E 5 HOH A 127 527 4 HOH HOH . E 5 HOH A 128 528 5 HOH HOH . E 5 HOH A 129 529 6 HOH HOH . E 5 HOH A 130 530 7 HOH HOH . E 5 HOH A 131 531 8 HOH HOH . E 5 HOH A 132 532 9 HOH HOH . E 5 HOH A 133 533 11 HOH HOH . E 5 HOH A 134 534 12 HOH HOH . E 5 HOH A 135 535 15 HOH HOH . E 5 HOH A 136 536 18 HOH HOH . E 5 HOH A 137 537 20 HOH HOH . E 5 HOH A 138 538 21 HOH HOH . E 5 HOH A 139 539 22 HOH HOH . E 5 HOH A 140 540 24 HOH HOH . E 5 HOH A 141 541 25 HOH HOH . E 5 HOH A 142 542 27 HOH HOH . E 5 HOH A 143 543 29 HOH HOH . E 5 HOH A 144 544 31 HOH HOH . E 5 HOH A 145 545 32 HOH HOH . E 5 HOH A 146 546 33 HOH HOH . E 5 HOH A 147 547 40 HOH HOH . E 5 HOH A 148 548 45 HOH HOH . E 5 HOH A 149 549 46 HOH HOH . E 5 HOH A 150 550 48 HOH HOH . E 5 HOH A 151 551 50 HOH HOH . E 5 HOH A 152 552 54 HOH HOH . E 5 HOH A 153 553 57 HOH HOH . E 5 HOH A 154 554 58 HOH HOH . E 5 HOH A 155 555 59 HOH HOH . E 5 HOH A 156 556 64 HOH HOH . E 5 HOH A 157 557 69 HOH HOH . E 5 HOH A 158 558 71 HOH HOH . E 5 HOH A 159 559 73 HOH HOH . E 5 HOH A 160 560 77 HOH HOH . E 5 HOH A 161 561 78 HOH HOH . E 5 HOH A 162 562 80 HOH HOH . E 5 HOH A 163 563 83 HOH HOH . E 5 HOH A 164 564 86 HOH HOH . E 5 HOH A 165 565 88 HOH HOH . E 5 HOH A 166 566 89 HOH HOH . E 5 HOH A 167 567 94 HOH HOH . E 5 HOH A 168 568 96 HOH HOH . E 5 HOH A 169 569 97 HOH HOH . E 5 HOH A 170 570 98 HOH HOH . E 5 HOH A 171 571 99 HOH HOH . E 5 HOH A 172 572 100 HOH HOH . E 5 HOH A 173 573 103 HOH HOH . E 5 HOH A 174 574 105 HOH HOH . E 5 HOH A 175 575 107 HOH HOH . E 5 HOH A 176 576 109 HOH HOH . E 5 HOH A 177 577 114 HOH HOH . E 5 HOH A 178 578 115 HOH HOH . E 5 HOH A 179 579 116 HOH HOH . E 5 HOH A 180 580 117 HOH HOH . E 5 HOH A 181 581 119 HOH HOH . E 5 HOH A 182 582 121 HOH HOH . E 5 HOH A 183 583 122 HOH HOH . E 5 HOH A 184 584 124 HOH HOH . E 5 HOH A 185 585 126 HOH HOH . E 5 HOH A 186 586 128 HOH HOH . E 5 HOH A 187 587 129 HOH HOH . E 5 HOH A 188 588 131 HOH HOH . E 5 HOH A 189 589 134 HOH HOH . E 5 HOH A 190 590 135 HOH HOH . E 5 HOH A 191 591 136 HOH HOH . E 5 HOH A 192 592 137 HOH HOH . E 5 HOH A 193 593 139 HOH HOH . E 5 HOH A 194 594 140 HOH HOH . E 5 HOH A 195 595 143 HOH HOH . E 5 HOH A 196 596 144 HOH HOH . E 5 HOH A 197 597 147 HOH HOH . E 5 HOH A 198 598 151 HOH HOH . E 5 HOH A 199 599 152 HOH HOH . E 5 HOH A 200 600 153 HOH HOH . E 5 HOH A 201 601 156 HOH HOH . E 5 HOH A 202 602 159 HOH HOH . E 5 HOH A 203 603 160 HOH HOH . E 5 HOH A 204 604 162 HOH HOH . E 5 HOH A 205 605 163 HOH HOH . E 5 HOH A 206 606 164 HOH HOH . E 5 HOH A 207 607 166 HOH HOH . E 5 HOH A 208 608 168 HOH HOH . E 5 HOH A 209 609 169 HOH HOH . E 5 HOH A 210 610 170 HOH HOH . E 5 HOH A 211 611 171 HOH HOH . E 5 HOH A 212 612 173 HOH HOH . E 5 HOH A 213 613 174 HOH HOH . E 5 HOH A 214 614 175 HOH HOH . E 5 HOH A 215 615 178 HOH HOH . E 5 HOH A 216 616 180 HOH HOH . E 5 HOH A 217 617 182 HOH HOH . E 5 HOH A 218 618 183 HOH HOH . E 5 HOH A 219 619 185 HOH HOH . E 5 HOH A 220 620 186 HOH HOH . E 5 HOH A 221 621 187 HOH HOH . E 5 HOH A 222 622 188 HOH HOH . E 5 HOH A 223 623 189 HOH HOH . E 5 HOH A 224 624 190 HOH HOH . E 5 HOH A 225 625 191 HOH HOH . E 5 HOH A 226 626 195 HOH HOH . E 5 HOH A 227 627 196 HOH HOH . E 5 HOH A 228 628 200 HOH HOH . E 5 HOH A 229 629 202 HOH HOH . E 5 HOH A 230 630 203 HOH HOH . E 5 HOH A 231 631 205 HOH HOH . E 5 HOH A 232 632 208 HOH HOH . E 5 HOH A 233 633 209 HOH HOH . E 5 HOH A 234 634 210 HOH HOH . E 5 HOH A 235 635 211 HOH HOH . E 5 HOH A 236 636 212 HOH HOH . E 5 HOH A 237 637 213 HOH HOH . E 5 HOH A 238 638 215 HOH HOH . E 5 HOH A 239 639 216 HOH HOH . E 5 HOH A 240 640 218 HOH HOH . E 5 HOH A 241 641 220 HOH HOH . E 5 HOH A 242 642 222 HOH HOH . E 5 HOH A 243 643 226 HOH HOH . E 5 HOH A 244 644 228 HOH HOH . E 5 HOH A 245 645 230 HOH HOH . E 5 HOH A 246 646 231 HOH HOH . E 5 HOH A 247 647 234 HOH HOH . E 5 HOH A 248 648 237 HOH HOH . E 5 HOH A 249 649 238 HOH HOH . E 5 HOH A 250 650 239 HOH HOH . E 5 HOH A 251 651 242 HOH HOH . E 5 HOH A 252 652 244 HOH HOH . E 5 HOH A 253 653 254 HOH HOH . E 5 HOH A 254 654 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . B 2 67.901 2.339 78.06 1 6.96 ? N1 URA 301 A 1 HETATM 2 C C2 URA . . . B 2 68.248 3.521 78.614 1 5.85 ? C2 URA 301 A 1 HETATM 3 O O2 URA . . . B 2 67.709 4.582 78.181 1 6.77 ? O2 URA 301 A 1 HETATM 4 N N3 URA . . . B 2 69.202 3.506 79.592 1 5.54 ? N3 URA 301 A 1 HETATM 5 C C4 URA . . . B 2 69.715 2.378 80.094 1 6.08 ? C4 URA 301 A 1 HETATM 6 O O4 URA . . . B 2 70.51 2.46 81.062 1 5.87 ? O4 URA 301 A 1 HETATM 7 C C5 URA . . . B 2 69.367 1.176 79.488 1 6.43 ? C5 URA 301 A 1 HETATM 8 C C6 URA . . . B 2 68.45 1.163 78.486 1 6.31 ? C6 URA 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #