data_4WS5 # _model_server_result.job_id A9ElXaFOx5uGTKIQ-tmmgA _model_server_result.datetime_utc '2024-11-27 19:10:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ws5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WS5 # _exptl.entry_id 4WS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.084 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-nitrouracil _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WS5 _cell.length_a 46.52 _cell.length_b 60.02 _cell.length_c 74.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H3 N3 O4' _chem_comp.formula_weight 157.084 _chem_comp.id 5NU _chem_comp.mon_nstd_flag . _chem_comp.name 5-nitrouracil _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O52 N51 5NU sing 1 n n O53 N51 5NU doub 2 n n N51 C5 5NU sing 3 n n O4 C4 5NU doub 4 n n C5 C4 5NU sing 5 n n C5 C6 5NU doub 6 n n C4 N3 5NU sing 7 n n C6 N1 5NU sing 8 n n N3 C2 5NU sing 9 n n N1 C2 5NU sing 10 n n C2 O2 5NU doub 11 n n N3 H1 5NU sing 12 n n C6 H2 5NU sing 13 n n N1 H4 5NU sing 14 n n # _atom_sites.entry_id 4WS5 _atom_sites.fract_transf_matrix[1][1] 0.021496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5NU A 1 301 1 5NU 5NU . C 3 CL A 1 302 1 CL CL . D 3 CL A 1 303 2 CL CL . E 4 HOH A 1 401 209 HOH HOH . E 4 HOH A 2 402 59 HOH HOH . E 4 HOH A 3 403 255 HOH HOH . E 4 HOH A 4 404 274 HOH HOH . E 4 HOH A 5 405 192 HOH HOH . E 4 HOH A 6 406 112 HOH HOH . E 4 HOH A 7 407 53 HOH HOH . E 4 HOH A 8 408 127 HOH HOH . E 4 HOH A 9 409 67 HOH HOH . E 4 HOH A 10 410 239 HOH HOH . E 4 HOH A 11 411 164 HOH HOH . E 4 HOH A 12 412 238 HOH HOH . E 4 HOH A 13 413 149 HOH HOH . E 4 HOH A 14 414 17 HOH HOH . E 4 HOH A 15 415 119 HOH HOH . E 4 HOH A 16 416 163 HOH HOH . E 4 HOH A 17 417 78 HOH HOH . E 4 HOH A 18 418 155 HOH HOH . E 4 HOH A 19 419 49 HOH HOH . E 4 HOH A 20 420 33 HOH HOH . E 4 HOH A 21 421 267 HOH HOH . E 4 HOH A 22 422 236 HOH HOH . E 4 HOH A 23 423 210 HOH HOH . E 4 HOH A 24 424 42 HOH HOH . E 4 HOH A 25 425 144 HOH HOH . E 4 HOH A 26 426 177 HOH HOH . E 4 HOH A 27 427 95 HOH HOH . E 4 HOH A 28 428 104 HOH HOH . E 4 HOH A 29 429 195 HOH HOH . E 4 HOH A 30 430 167 HOH HOH . E 4 HOH A 31 431 114 HOH HOH . E 4 HOH A 32 432 88 HOH HOH . E 4 HOH A 33 433 198 HOH HOH . E 4 HOH A 34 434 69 HOH HOH . E 4 HOH A 35 435 138 HOH HOH . E 4 HOH A 36 436 162 HOH HOH . E 4 HOH A 37 437 248 HOH HOH . E 4 HOH A 38 438 31 HOH HOH . E 4 HOH A 39 439 276 HOH HOH . E 4 HOH A 40 440 47 HOH HOH . E 4 HOH A 41 441 227 HOH HOH . E 4 HOH A 42 442 91 HOH HOH . E 4 HOH A 43 443 66 HOH HOH . E 4 HOH A 44 444 48 HOH HOH . E 4 HOH A 45 445 154 HOH HOH . E 4 HOH A 46 446 270 HOH HOH . E 4 HOH A 47 447 68 HOH HOH . E 4 HOH A 48 448 99 HOH HOH . E 4 HOH A 49 449 20 HOH HOH . E 4 HOH A 50 450 185 HOH HOH . E 4 HOH A 51 451 133 HOH HOH . E 4 HOH A 52 452 135 HOH HOH . E 4 HOH A 53 453 71 HOH HOH . E 4 HOH A 54 454 109 HOH HOH . E 4 HOH A 55 455 160 HOH HOH . E 4 HOH A 56 456 81 HOH HOH . E 4 HOH A 57 457 22 HOH HOH . E 4 HOH A 58 458 216 HOH HOH . E 4 HOH A 59 459 150 HOH HOH . E 4 HOH A 60 460 100 HOH HOH . E 4 HOH A 61 461 228 HOH HOH . E 4 HOH A 62 462 103 HOH HOH . E 4 HOH A 63 463 204 HOH HOH . E 4 HOH A 64 464 278 HOH HOH . E 4 HOH A 65 465 28 HOH HOH . E 4 HOH A 66 466 235 HOH HOH . E 4 HOH A 67 467 280 HOH HOH . E 4 HOH A 68 468 57 HOH HOH . E 4 HOH A 69 469 60 HOH HOH . E 4 HOH A 70 470 146 HOH HOH . E 4 HOH A 71 471 284 HOH HOH . E 4 HOH A 72 472 30 HOH HOH . E 4 HOH A 73 473 113 HOH HOH . E 4 HOH A 74 474 94 HOH HOH . E 4 HOH A 75 475 19 HOH HOH . E 4 HOH A 76 476 15 HOH HOH . E 4 HOH A 77 477 61 HOH HOH . E 4 HOH A 78 478 37 HOH HOH . E 4 HOH A 79 479 158 HOH HOH . E 4 HOH A 80 480 180 HOH HOH . E 4 HOH A 81 481 190 HOH HOH . E 4 HOH A 82 482 65 HOH HOH . E 4 HOH A 83 483 175 HOH HOH . E 4 HOH A 84 484 72 HOH HOH . E 4 HOH A 85 485 285 HOH HOH . E 4 HOH A 86 486 151 HOH HOH . E 4 HOH A 87 487 70 HOH HOH . E 4 HOH A 88 488 184 HOH HOH . E 4 HOH A 89 489 281 HOH HOH . E 4 HOH A 90 490 169 HOH HOH . E 4 HOH A 91 491 52 HOH HOH . E 4 HOH A 92 492 143 HOH HOH . E 4 HOH A 93 493 54 HOH HOH . E 4 HOH A 94 494 63 HOH HOH . E 4 HOH A 95 495 157 HOH HOH . E 4 HOH A 96 496 230 HOH HOH . E 4 HOH A 97 497 242 HOH HOH . E 4 HOH A 98 498 286 HOH HOH . E 4 HOH A 99 499 287 HOH HOH . E 4 HOH A 100 500 196 HOH HOH . E 4 HOH A 101 501 283 HOH HOH . E 4 HOH A 102 502 179 HOH HOH . E 4 HOH A 103 503 98 HOH HOH . E 4 HOH A 104 504 262 HOH HOH . E 4 HOH A 105 505 106 HOH HOH . E 4 HOH A 106 506 202 HOH HOH . E 4 HOH A 107 507 83 HOH HOH . E 4 HOH A 108 508 105 HOH HOH . E 4 HOH A 109 509 108 HOH HOH . E 4 HOH A 110 510 273 HOH HOH . E 4 HOH A 111 511 115 HOH HOH . E 4 HOH A 112 512 260 HOH HOH . E 4 HOH A 113 513 241 HOH HOH . E 4 HOH A 114 514 188 HOH HOH . E 4 HOH A 115 515 142 HOH HOH . E 4 HOH A 116 516 172 HOH HOH . E 4 HOH A 117 517 194 HOH HOH . E 4 HOH A 118 518 263 HOH HOH . E 4 HOH A 119 519 229 HOH HOH . E 4 HOH A 120 520 125 HOH HOH . E 4 HOH A 121 521 275 HOH HOH . E 4 HOH A 122 522 205 HOH HOH . E 4 HOH A 123 523 139 HOH HOH . E 4 HOH A 124 524 206 HOH HOH . E 4 HOH A 125 525 257 HOH HOH . E 4 HOH A 126 526 183 HOH HOH . E 4 HOH A 127 527 211 HOH HOH . E 4 HOH A 128 528 226 HOH HOH . E 4 HOH A 129 529 201 HOH HOH . E 4 HOH A 130 530 166 HOH HOH . E 4 HOH A 131 531 134 HOH HOH . E 4 HOH A 132 532 181 HOH HOH . E 4 HOH A 133 533 117 HOH HOH . E 4 HOH A 134 534 214 HOH HOH . E 4 HOH A 135 535 187 HOH HOH . E 4 HOH A 136 536 245 HOH HOH . E 4 HOH A 137 537 50 HOH HOH . E 4 HOH A 138 538 74 HOH HOH . E 4 HOH A 139 539 116 HOH HOH . E 4 HOH A 140 540 1 HOH HOH . E 4 HOH A 141 541 2 HOH HOH . E 4 HOH A 142 542 3 HOH HOH . E 4 HOH A 143 543 4 HOH HOH . E 4 HOH A 144 544 5 HOH HOH . E 4 HOH A 145 545 6 HOH HOH . E 4 HOH A 146 546 7 HOH HOH . E 4 HOH A 147 547 8 HOH HOH . E 4 HOH A 148 548 9 HOH HOH . E 4 HOH A 149 549 10 HOH HOH . E 4 HOH A 150 550 11 HOH HOH . E 4 HOH A 151 551 12 HOH HOH . E 4 HOH A 152 552 13 HOH HOH . E 4 HOH A 153 553 14 HOH HOH . E 4 HOH A 154 554 16 HOH HOH . E 4 HOH A 155 555 18 HOH HOH . E 4 HOH A 156 556 21 HOH HOH . E 4 HOH A 157 557 23 HOH HOH . E 4 HOH A 158 558 24 HOH HOH . E 4 HOH A 159 559 25 HOH HOH . E 4 HOH A 160 560 26 HOH HOH . E 4 HOH A 161 561 27 HOH HOH . E 4 HOH A 162 562 29 HOH HOH . E 4 HOH A 163 563 32 HOH HOH . E 4 HOH A 164 564 34 HOH HOH . E 4 HOH A 165 565 35 HOH HOH . E 4 HOH A 166 566 36 HOH HOH . E 4 HOH A 167 567 38 HOH HOH . E 4 HOH A 168 568 39 HOH HOH . E 4 HOH A 169 569 40 HOH HOH . E 4 HOH A 170 570 41 HOH HOH . E 4 HOH A 171 571 43 HOH HOH . E 4 HOH A 172 572 44 HOH HOH . E 4 HOH A 173 573 45 HOH HOH . E 4 HOH A 174 574 46 HOH HOH . E 4 HOH A 175 575 51 HOH HOH . E 4 HOH A 176 576 55 HOH HOH . E 4 HOH A 177 577 56 HOH HOH . E 4 HOH A 178 578 58 HOH HOH . E 4 HOH A 179 579 62 HOH HOH . E 4 HOH A 180 580 64 HOH HOH . E 4 HOH A 181 581 73 HOH HOH . E 4 HOH A 182 582 75 HOH HOH . E 4 HOH A 183 583 76 HOH HOH . E 4 HOH A 184 584 77 HOH HOH . E 4 HOH A 185 585 79 HOH HOH . E 4 HOH A 186 586 80 HOH HOH . E 4 HOH A 187 587 82 HOH HOH . E 4 HOH A 188 588 84 HOH HOH . E 4 HOH A 189 589 85 HOH HOH . E 4 HOH A 190 590 86 HOH HOH . E 4 HOH A 191 591 87 HOH HOH . E 4 HOH A 192 592 89 HOH HOH . E 4 HOH A 193 593 90 HOH HOH . E 4 HOH A 194 594 92 HOH HOH . E 4 HOH A 195 595 93 HOH HOH . E 4 HOH A 196 596 96 HOH HOH . E 4 HOH A 197 597 97 HOH HOH . E 4 HOH A 198 598 101 HOH HOH . E 4 HOH A 199 599 102 HOH HOH . E 4 HOH A 200 600 107 HOH HOH . E 4 HOH A 201 601 110 HOH HOH . E 4 HOH A 202 602 111 HOH HOH . E 4 HOH A 203 603 118 HOH HOH . E 4 HOH A 204 604 120 HOH HOH . E 4 HOH A 205 605 121 HOH HOH . E 4 HOH A 206 606 122 HOH HOH . E 4 HOH A 207 607 123 HOH HOH . E 4 HOH A 208 608 124 HOH HOH . E 4 HOH A 209 609 126 HOH HOH . E 4 HOH A 210 610 128 HOH HOH . E 4 HOH A 211 611 129 HOH HOH . E 4 HOH A 212 612 130 HOH HOH . E 4 HOH A 213 613 131 HOH HOH . E 4 HOH A 214 614 132 HOH HOH . E 4 HOH A 215 615 136 HOH HOH . E 4 HOH A 216 616 137 HOH HOH . E 4 HOH A 217 617 140 HOH HOH . E 4 HOH A 218 618 141 HOH HOH . E 4 HOH A 219 619 145 HOH HOH . E 4 HOH A 220 620 147 HOH HOH . E 4 HOH A 221 621 148 HOH HOH . E 4 HOH A 222 622 152 HOH HOH . E 4 HOH A 223 623 153 HOH HOH . E 4 HOH A 224 624 156 HOH HOH . E 4 HOH A 225 625 159 HOH HOH . E 4 HOH A 226 626 161 HOH HOH . E 4 HOH A 227 627 165 HOH HOH . E 4 HOH A 228 628 168 HOH HOH . E 4 HOH A 229 629 170 HOH HOH . E 4 HOH A 230 630 171 HOH HOH . E 4 HOH A 231 631 173 HOH HOH . E 4 HOH A 232 632 174 HOH HOH . E 4 HOH A 233 633 176 HOH HOH . E 4 HOH A 234 634 178 HOH HOH . E 4 HOH A 235 635 182 HOH HOH . E 4 HOH A 236 636 186 HOH HOH . E 4 HOH A 237 637 189 HOH HOH . E 4 HOH A 238 638 191 HOH HOH . E 4 HOH A 239 639 193 HOH HOH . E 4 HOH A 240 640 197 HOH HOH . E 4 HOH A 241 641 199 HOH HOH . E 4 HOH A 242 642 200 HOH HOH . E 4 HOH A 243 643 203 HOH HOH . E 4 HOH A 244 644 207 HOH HOH . E 4 HOH A 245 645 208 HOH HOH . E 4 HOH A 246 646 212 HOH HOH . E 4 HOH A 247 647 213 HOH HOH . E 4 HOH A 248 648 215 HOH HOH . E 4 HOH A 249 649 217 HOH HOH . E 4 HOH A 250 650 218 HOH HOH . E 4 HOH A 251 651 219 HOH HOH . E 4 HOH A 252 652 220 HOH HOH . E 4 HOH A 253 653 221 HOH HOH . E 4 HOH A 254 654 222 HOH HOH . E 4 HOH A 255 655 223 HOH HOH . E 4 HOH A 256 656 224 HOH HOH . E 4 HOH A 257 657 225 HOH HOH . E 4 HOH A 258 658 231 HOH HOH . E 4 HOH A 259 659 232 HOH HOH . E 4 HOH A 260 660 233 HOH HOH . E 4 HOH A 261 661 234 HOH HOH . E 4 HOH A 262 662 237 HOH HOH . E 4 HOH A 263 663 240 HOH HOH . E 4 HOH A 264 664 243 HOH HOH . E 4 HOH A 265 665 244 HOH HOH . E 4 HOH A 266 666 246 HOH HOH . E 4 HOH A 267 667 247 HOH HOH . E 4 HOH A 268 668 249 HOH HOH . E 4 HOH A 269 669 250 HOH HOH . E 4 HOH A 270 670 251 HOH HOH . E 4 HOH A 271 671 252 HOH HOH . E 4 HOH A 272 672 253 HOH HOH . E 4 HOH A 273 673 254 HOH HOH . E 4 HOH A 274 674 256 HOH HOH . E 4 HOH A 275 675 258 HOH HOH . E 4 HOH A 276 676 259 HOH HOH . E 4 HOH A 277 677 261 HOH HOH . E 4 HOH A 278 678 264 HOH HOH . E 4 HOH A 279 679 265 HOH HOH . E 4 HOH A 280 680 266 HOH HOH . E 4 HOH A 281 681 268 HOH HOH . E 4 HOH A 282 682 269 HOH HOH . E 4 HOH A 283 683 271 HOH HOH . E 4 HOH A 284 684 272 HOH HOH . E 4 HOH A 285 685 277 HOH HOH . E 4 HOH A 286 686 279 HOH HOH . E 4 HOH A 287 687 282 HOH HOH . E 4 HOH A 288 688 288 HOH HOH . E 4 HOH A 289 689 289 HOH HOH . E 4 HOH A 290 690 290 HOH HOH . E 4 HOH A 291 691 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 5NU . . . B 2 -1.428 16.887 -11.979 1 13.2 ? O4 5NU 301 A 1 HETATM 2 C C4 5NU . . . B 2 -1.061 15.996 -11.186 1 11.85 ? C4 5NU 301 A 1 HETATM 3 N N3 5NU . . . B 2 -0.456 14.939 -11.733 1 9.92 ? N3 5NU 301 A 1 HETATM 4 C C2 5NU . . . B 2 0.021 13.972 -10.935 1 10 ? C2 5NU 301 A 1 HETATM 5 O O2 5NU . . . B 2 0.629 12.995 -11.485 1 9.96 ? O2 5NU 301 A 1 HETATM 6 N N1 5NU . . . B 2 -0.181 13.918 -9.656 1 12 ? N1 5NU 301 A 1 HETATM 7 C C6 5NU . . . B 2 -0.837 14.918 -9.11 1 12.98 ? C6 5NU 301 A 1 HETATM 8 C C5 5NU . . . B 2 -1.265 16.03 -9.814 1 12.05 ? C5 5NU 301 A 1 HETATM 9 N N51 5NU . . . B 2 -1.95 17.04 -9.125 1 17.36 ? N51 5NU 301 A 1 HETATM 10 O O53 5NU . . . B 2 -2.34 16.839 -7.791 1 26.62 ? O53 5NU 301 A 1 HETATM 11 O O52 5NU . . . B 2 -2.183 18.145 -9.736 1 32.26 ? O52 5NU 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #