data_4WS8 # _model_server_result.job_id HQN2_SKFW2JWa_E7OKphtA _model_server_result.datetime_utc '2024-11-08 07:39:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ws8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WS8 # _exptl.entry_id 4WS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-thioxo-2,3-dihydropyrimidin-4(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WS8 _cell.length_a 37.06 _cell.length_b 45.07 _cell.length_c 122.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H4 N2 O S' _chem_comp.formula_weight 128.152 _chem_comp.id TUL _chem_comp.mon_nstd_flag . _chem_comp.name 2-thioxo-2,3-dihydropyrimidin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S2 C2 TUL doub 334 n n N3 C2 TUL sing 335 n n N3 C4 TUL sing 336 n n C2 N1 TUL sing 337 n n O4 C4 TUL doub 338 n n C4 C5 TUL sing 339 n n N1 C6 TUL sing 340 n n C5 C6 TUL doub 341 n n C5 H1 TUL sing 342 n n C6 H3 TUL sing 343 n n N3 H4 TUL sing 344 n n N1 H2 TUL sing 345 n n # _atom_sites.entry_id 4WS8 _atom_sites.fract_transf_matrix[1][1] 0.026983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TUL A 1 301 1 TUL TUL . C 3 CL A 1 302 1 CL CL . D 4 HOH A 1 401 145 HOH HOH . D 4 HOH A 2 402 71 HOH HOH . D 4 HOH A 3 403 211 HOH HOH . D 4 HOH A 4 404 166 HOH HOH . D 4 HOH A 5 405 106 HOH HOH . D 4 HOH A 6 406 42 HOH HOH . D 4 HOH A 7 407 127 HOH HOH . D 4 HOH A 8 408 185 HOH HOH . D 4 HOH A 9 409 161 HOH HOH . D 4 HOH A 10 410 149 HOH HOH . D 4 HOH A 11 411 13 HOH HOH . D 4 HOH A 12 412 19 HOH HOH . D 4 HOH A 13 413 193 HOH HOH . D 4 HOH A 14 414 32 HOH HOH . D 4 HOH A 15 415 118 HOH HOH . D 4 HOH A 16 416 85 HOH HOH . D 4 HOH A 17 417 95 HOH HOH . D 4 HOH A 18 418 75 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 114 HOH HOH . D 4 HOH A 21 421 11 HOH HOH . D 4 HOH A 22 422 186 HOH HOH . D 4 HOH A 23 423 194 HOH HOH . D 4 HOH A 24 424 126 HOH HOH . D 4 HOH A 25 425 37 HOH HOH . D 4 HOH A 26 426 44 HOH HOH . D 4 HOH A 27 427 94 HOH HOH . D 4 HOH A 28 428 83 HOH HOH . D 4 HOH A 29 429 135 HOH HOH . D 4 HOH A 30 430 38 HOH HOH . D 4 HOH A 31 431 120 HOH HOH . D 4 HOH A 32 432 15 HOH HOH . D 4 HOH A 33 433 86 HOH HOH . D 4 HOH A 34 434 47 HOH HOH . D 4 HOH A 35 435 116 HOH HOH . D 4 HOH A 36 436 39 HOH HOH . D 4 HOH A 37 437 30 HOH HOH . D 4 HOH A 38 438 35 HOH HOH . D 4 HOH A 39 439 58 HOH HOH . D 4 HOH A 40 440 119 HOH HOH . D 4 HOH A 41 441 55 HOH HOH . D 4 HOH A 42 442 29 HOH HOH . D 4 HOH A 43 443 17 HOH HOH . D 4 HOH A 44 444 122 HOH HOH . D 4 HOH A 45 445 63 HOH HOH . D 4 HOH A 46 446 76 HOH HOH . D 4 HOH A 47 447 52 HOH HOH . D 4 HOH A 48 448 22 HOH HOH . D 4 HOH A 49 449 177 HOH HOH . D 4 HOH A 50 450 111 HOH HOH . D 4 HOH A 51 451 112 HOH HOH . D 4 HOH A 52 452 51 HOH HOH . D 4 HOH A 53 453 192 HOH HOH . D 4 HOH A 54 454 200 HOH HOH . D 4 HOH A 55 455 77 HOH HOH . D 4 HOH A 56 456 184 HOH HOH . D 4 HOH A 57 457 198 HOH HOH . D 4 HOH A 58 458 104 HOH HOH . D 4 HOH A 59 459 87 HOH HOH . D 4 HOH A 60 460 162 HOH HOH . D 4 HOH A 61 461 201 HOH HOH . D 4 HOH A 62 462 82 HOH HOH . D 4 HOH A 63 463 105 HOH HOH . D 4 HOH A 64 464 197 HOH HOH . D 4 HOH A 65 465 195 HOH HOH . D 4 HOH A 66 466 199 HOH HOH . D 4 HOH A 67 467 179 HOH HOH . D 4 HOH A 68 468 202 HOH HOH . D 4 HOH A 69 469 150 HOH HOH . D 4 HOH A 70 470 190 HOH HOH . D 4 HOH A 71 471 49 HOH HOH . D 4 HOH A 72 472 147 HOH HOH . D 4 HOH A 73 473 203 HOH HOH . D 4 HOH A 74 474 139 HOH HOH . D 4 HOH A 75 475 61 HOH HOH . D 4 HOH A 76 476 146 HOH HOH . D 4 HOH A 77 477 169 HOH HOH . D 4 HOH A 78 478 191 HOH HOH . D 4 HOH A 79 479 46 HOH HOH . D 4 HOH A 80 480 206 HOH HOH . D 4 HOH A 81 481 188 HOH HOH . D 4 HOH A 82 482 1 HOH HOH . D 4 HOH A 83 483 2 HOH HOH . D 4 HOH A 84 484 3 HOH HOH . D 4 HOH A 85 485 4 HOH HOH . D 4 HOH A 86 486 5 HOH HOH . D 4 HOH A 87 487 6 HOH HOH . D 4 HOH A 88 488 7 HOH HOH . D 4 HOH A 89 489 8 HOH HOH . D 4 HOH A 90 490 9 HOH HOH . D 4 HOH A 91 491 10 HOH HOH . D 4 HOH A 92 492 12 HOH HOH . D 4 HOH A 93 493 14 HOH HOH . D 4 HOH A 94 494 16 HOH HOH . D 4 HOH A 95 495 18 HOH HOH . D 4 HOH A 96 496 20 HOH HOH . D 4 HOH A 97 497 23 HOH HOH . D 4 HOH A 98 498 24 HOH HOH . D 4 HOH A 99 499 25 HOH HOH . D 4 HOH A 100 500 26 HOH HOH . D 4 HOH A 101 501 27 HOH HOH . D 4 HOH A 102 502 28 HOH HOH . D 4 HOH A 103 503 31 HOH HOH . D 4 HOH A 104 504 33 HOH HOH . D 4 HOH A 105 505 34 HOH HOH . D 4 HOH A 106 506 36 HOH HOH . D 4 HOH A 107 507 40 HOH HOH . D 4 HOH A 108 508 41 HOH HOH . D 4 HOH A 109 509 43 HOH HOH . D 4 HOH A 110 510 45 HOH HOH . D 4 HOH A 111 511 48 HOH HOH . D 4 HOH A 112 512 50 HOH HOH . D 4 HOH A 113 513 53 HOH HOH . D 4 HOH A 114 514 54 HOH HOH . D 4 HOH A 115 515 56 HOH HOH . D 4 HOH A 116 516 57 HOH HOH . D 4 HOH A 117 517 59 HOH HOH . D 4 HOH A 118 518 60 HOH HOH . D 4 HOH A 119 519 62 HOH HOH . D 4 HOH A 120 520 64 HOH HOH . D 4 HOH A 121 521 65 HOH HOH . D 4 HOH A 122 522 66 HOH HOH . D 4 HOH A 123 523 67 HOH HOH . D 4 HOH A 124 524 68 HOH HOH . D 4 HOH A 125 525 69 HOH HOH . D 4 HOH A 126 526 70 HOH HOH . D 4 HOH A 127 527 72 HOH HOH . D 4 HOH A 128 528 73 HOH HOH . D 4 HOH A 129 529 74 HOH HOH . D 4 HOH A 130 530 78 HOH HOH . D 4 HOH A 131 531 79 HOH HOH . D 4 HOH A 132 532 80 HOH HOH . D 4 HOH A 133 533 81 HOH HOH . D 4 HOH A 134 534 84 HOH HOH . D 4 HOH A 135 535 88 HOH HOH . D 4 HOH A 136 536 89 HOH HOH . D 4 HOH A 137 537 90 HOH HOH . D 4 HOH A 138 538 91 HOH HOH . D 4 HOH A 139 539 92 HOH HOH . D 4 HOH A 140 540 93 HOH HOH . D 4 HOH A 141 541 96 HOH HOH . D 4 HOH A 142 542 97 HOH HOH . D 4 HOH A 143 543 98 HOH HOH . D 4 HOH A 144 544 99 HOH HOH . D 4 HOH A 145 545 100 HOH HOH . D 4 HOH A 146 546 101 HOH HOH . D 4 HOH A 147 547 102 HOH HOH . D 4 HOH A 148 548 103 HOH HOH . D 4 HOH A 149 549 107 HOH HOH . D 4 HOH A 150 550 108 HOH HOH . D 4 HOH A 151 551 109 HOH HOH . D 4 HOH A 152 552 110 HOH HOH . D 4 HOH A 153 553 113 HOH HOH . D 4 HOH A 154 554 115 HOH HOH . D 4 HOH A 155 555 117 HOH HOH . D 4 HOH A 156 556 121 HOH HOH . D 4 HOH A 157 557 123 HOH HOH . D 4 HOH A 158 558 124 HOH HOH . D 4 HOH A 159 559 125 HOH HOH . D 4 HOH A 160 560 128 HOH HOH . D 4 HOH A 161 561 129 HOH HOH . D 4 HOH A 162 562 130 HOH HOH . D 4 HOH A 163 563 131 HOH HOH . D 4 HOH A 164 564 132 HOH HOH . D 4 HOH A 165 565 133 HOH HOH . D 4 HOH A 166 566 134 HOH HOH . D 4 HOH A 167 567 136 HOH HOH . D 4 HOH A 168 568 137 HOH HOH . D 4 HOH A 169 569 138 HOH HOH . D 4 HOH A 170 570 140 HOH HOH . D 4 HOH A 171 571 141 HOH HOH . D 4 HOH A 172 572 142 HOH HOH . D 4 HOH A 173 573 143 HOH HOH . D 4 HOH A 174 574 144 HOH HOH . D 4 HOH A 175 575 148 HOH HOH . D 4 HOH A 176 576 151 HOH HOH . D 4 HOH A 177 577 152 HOH HOH . D 4 HOH A 178 578 153 HOH HOH . D 4 HOH A 179 579 154 HOH HOH . D 4 HOH A 180 580 155 HOH HOH . D 4 HOH A 181 581 156 HOH HOH . D 4 HOH A 182 582 157 HOH HOH . D 4 HOH A 183 583 158 HOH HOH . D 4 HOH A 184 584 159 HOH HOH . D 4 HOH A 185 585 160 HOH HOH . D 4 HOH A 186 586 163 HOH HOH . D 4 HOH A 187 587 164 HOH HOH . D 4 HOH A 188 588 165 HOH HOH . D 4 HOH A 189 589 167 HOH HOH . D 4 HOH A 190 590 168 HOH HOH . D 4 HOH A 191 591 170 HOH HOH . D 4 HOH A 192 592 171 HOH HOH . D 4 HOH A 193 593 172 HOH HOH . D 4 HOH A 194 594 173 HOH HOH . D 4 HOH A 195 595 174 HOH HOH . D 4 HOH A 196 596 175 HOH HOH . D 4 HOH A 197 597 176 HOH HOH . D 4 HOH A 198 598 178 HOH HOH . D 4 HOH A 199 599 180 HOH HOH . D 4 HOH A 200 600 181 HOH HOH . D 4 HOH A 201 601 182 HOH HOH . D 4 HOH A 202 602 183 HOH HOH . D 4 HOH A 203 603 187 HOH HOH . D 4 HOH A 204 604 189 HOH HOH . D 4 HOH A 205 605 196 HOH HOH . D 4 HOH A 206 606 204 HOH HOH . D 4 HOH A 207 607 205 HOH HOH . D 4 HOH A 208 608 207 HOH HOH . D 4 HOH A 209 609 208 HOH HOH . D 4 HOH A 210 610 209 HOH HOH . D 4 HOH A 211 611 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 TUL . A . B 2 -15.141 -6.033 20.161 0.5 15.78 ? O4 TUL 301 A 1 HETATM 2 O O4 TUL . B . B 2 -18.686 -8.86 18.822 0.5 21.01 ? O4 TUL 301 A 1 HETATM 3 C C4 TUL . A . B 2 -16.088 -6.737 20.418 0.5 14.1 ? C4 TUL 301 A 1 HETATM 4 C C4 TUL . B . B 2 -17.985 -8.267 19.654 0.5 21.47 ? C4 TUL 301 A 1 HETATM 5 C C5 TUL . A . B 2 -16.388 -6.886 21.711 0.5 19.24 ? C5 TUL 301 A 1 HETATM 6 C C5 TUL . B . B 2 -18.274 -8.42 20.985 0.5 21.77 ? C5 TUL 301 A 1 HETATM 7 C C6 TUL . A . B 2 -17.462 -7.68 22.074 0.5 19.93 ? C6 TUL 301 A 1 HETATM 8 C C6 TUL . B . B 2 -17.522 -7.78 21.949 0.5 20.79 ? C6 TUL 301 A 1 HETATM 9 N N1 TUL . A . B 2 -18.176 -8.278 21.158 0.5 20.21 ? N1 TUL 301 A 1 HETATM 10 N N1 TUL . B . B 2 -16.506 -7.003 21.612 0.5 20.86 ? N1 TUL 301 A 1 HETATM 11 C C2 TUL . A . B 2 -17.9 -8.151 19.808 0.5 20.17 ? C2 TUL 301 A 1 HETATM 12 C C2 TUL . B . B 2 -16.183 -6.821 20.343 0.5 16.44 ? C2 TUL 301 A 1 HETATM 13 S S2 TUL . A . B 2 -18.948 -9.017 18.657 0.5 19.1 ? S2 TUL 301 A 1 HETATM 14 S S2 TUL . B . B 2 -14.961 -5.882 20.046 0.5 21.1 ? S2 TUL 301 A 1 HETATM 15 N N3 TUL . A . B 2 -16.834 -7.366 19.419 0.5 18.78 ? N3 TUL 301 A 1 HETATM 16 N N3 TUL . B . B 2 -16.917 -7.452 19.321 0.5 19.36 ? N3 TUL 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #