data_4WSB # _model_server_result.job_id OuJ6MXjn6C6zTDMMKSnliA _model_server_result.datetime_utc '2024-11-08 07:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wsb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":802}' # _entry.id 4WSB # _exptl.entry_id 4WSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98 _cell.angle_gamma 90 _cell.entry_id 4WSB _cell.length_a 268.19 _cell.length_b 149.32 _cell.length_c 88.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 D N3 C 5 R C 5 1_555 E N1 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N4 C 5 R C 5 1_555 E O6 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O2 C 5 R C 5 1_555 E N2 G 15 V G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N3 C 6 R C 6 1_555 E N1 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N4 C 6 R C 6 1_555 E O6 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D O2 C 6 R C 6 1_555 E N2 G 14 V G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N3 U 7 R U 7 1_555 E N1 A 13 V A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O4 U 7 R U 7 1_555 E N6 A 13 V A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N3 C 8 R C 8 1_555 E N1 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N4 C 8 R C 8 1_555 E O6 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D O2 C 8 R C 8 1_555 E N2 G 12 V G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N3 U 9 R U 9 1_555 E N1 A 11 V A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D O4 U 9 R U 9 1_555 E N6 A 11 V A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog14 E N6 A 1 V A 1 1_555 E N3 A 10 V A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E N1 G 2 V G 2 1_555 E N3 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N2 G 2 V G 2 1_555 E O2 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E O6 G 2 V G 2 1_555 E N4 C 9 V C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog18 E N1 G 2 V G 2 1_555 E N3 A 10 V A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N3 U 3 V U 3 1_555 E N1 A 8 V A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E O4 U 3 V U 3 1_555 E N6 A 8 V A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog21 E N3 A 4 V A 4 1_555 E N6 A 7 V A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 375 n n P O2 PO4 sing 376 n n P O3 PO4 sing 377 n n P O4 PO4 sing 378 n n # _atom_sites.entry_id 4WSB _atom_sites.fract_transf_matrix[1][1] 0.003729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000524 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN A 1 801 1 ZN ZN . G 7 PO4 A 1 802 1 PO4 PO4 . H 7 PO4 A 1 803 2 PO4 PO4 . I 7 PO4 A 1 804 8 PO4 PO4 . J 7 PO4 A 1 805 11 PO4 PO4 . K 7 PO4 B 1 801 3 PO4 PO4 . L 7 PO4 B 1 802 4 PO4 PO4 . M 7 PO4 B 1 803 5 PO4 PO4 . N 7 PO4 B 1 804 9 PO4 PO4 . O 7 PO4 B 1 805 10 PO4 PO4 . P 7 PO4 B 1 806 12 PO4 PO4 . Q 7 PO4 B 1 807 13 PO4 PO4 . R 7 PO4 B 1 808 15 PO4 PO4 . S 7 PO4 B 1 809 16 PO4 PO4 . T 7 PO4 C 1 801 6 PO4 PO4 . U 7 PO4 C 1 802 7 PO4 PO4 . V 7 PO4 C 1 803 17 PO4 PO4 . W 8 HOH A 1 901 2 HOH HOH . W 8 HOH A 2 902 5 HOH HOH . W 8 HOH A 3 903 6 HOH HOH . W 8 HOH A 4 904 7 HOH HOH . W 8 HOH A 5 905 11 HOH HOH . W 8 HOH A 6 906 34 HOH HOH . W 8 HOH A 7 907 38 HOH HOH . W 8 HOH A 8 908 52 HOH HOH . W 8 HOH A 9 909 59 HOH HOH . X 8 HOH B 1 901 14 HOH HOH . X 8 HOH B 2 902 3 HOH HOH . X 8 HOH B 3 903 9 HOH HOH . X 8 HOH B 4 904 17 HOH HOH . X 8 HOH B 5 905 18 HOH HOH . X 8 HOH B 6 906 26 HOH HOH . X 8 HOH B 7 907 27 HOH HOH . X 8 HOH B 8 908 31 HOH HOH . X 8 HOH B 9 909 42 HOH HOH . X 8 HOH B 10 910 51 HOH HOH . X 8 HOH B 11 911 53 HOH HOH . Y 8 HOH C 1 901 10 HOH HOH . Y 8 HOH C 2 902 12 HOH HOH . Y 8 HOH C 3 903 19 HOH HOH . Y 8 HOH C 4 904 20 HOH HOH . Y 8 HOH C 5 905 21 HOH HOH . Y 8 HOH C 6 906 22 HOH HOH . Y 8 HOH C 7 907 23 HOH HOH . Y 8 HOH C 8 908 24 HOH HOH . Y 8 HOH C 9 909 35 HOH HOH . Z 8 HOH R 1 101 8 HOH HOH . AA 8 HOH V 1 101 4 HOH HOH . AA 8 HOH V 2 102 33 HOH HOH . AA 8 HOH V 3 103 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 7 1081.767 -54.579 403.16 1 101.21 ? P PO4 802 A 1 HETATM 2 O O1 PO4 . . . G 7 1082.004 -55.79 402.287 1 82.39 ? O1 PO4 802 A 1 HETATM 3 O O2 PO4 . . . G 7 1080.935 -53.566 402.409 1 100.02 ? O2 PO4 802 A 1 HETATM 4 O O3 PO4 . . . G 7 1083.091 -53.956 403.54 1 89.55 ? O3 PO4 802 A 1 HETATM 5 O O4 PO4 . . . G 7 1081.03 -55.002 404.407 1 90.69 ? O4 PO4 802 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #