data_4WSU # _model_server_result.job_id 8FrnXXki_iuPHXNg_jCAxw _model_server_result.datetime_utc '2025-01-11 17:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 4WSU # _exptl.entry_id 4WSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.04 _cell.angle_gamma 90 _cell.entry_id 4WSU _cell.length_a 186.978 _cell.length_b 100.08 _cell.length_c 135.239 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 O N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 406 NAG 3 n G GAL 2 G 2 GAL A 405 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 4 1_555 D SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 47 A CYS 42 1_555 A SG CYS 282 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 60 A CYS 55 1_555 A SG CYS 72 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf4 A SG CYS 95 A CYS 90 1_555 A SG CYS 140 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf5 A SG CYS 286 A CYS 281 1_555 A SG CYS 310 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 B SG CYS 9 C CYS 4 1_555 E SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf7 B SG CYS 47 C CYS 42 1_555 B SG CYS 282 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 B SG CYS 60 C CYS 55 1_555 B SG CYS 72 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf9 B SG CYS 95 C CYS 90 1_555 B SG CYS 140 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf10 B SG CYS 286 C CYS 281 1_555 B SG CYS 310 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf11 C SG CYS 9 E CYS 4 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf12 C SG CYS 47 E CYS 42 1_555 C SG CYS 282 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 C SG CYS 60 E CYS 55 1_555 C SG CYS 72 E CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf14 C SG CYS 95 E CYS 90 1_555 C SG CYS 140 E CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf15 C SG CYS 286 E CYS 281 1_555 C SG CYS 310 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf16 D SG CYS 144 B CYS 144 1_555 D SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf17 E SG CYS 144 D CYS 144 1_555 E SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? covale ? covale1 A ND2 ASN 16 A ASN 11 1_555 H C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale2 A ND2 ASN 28 A ASN 23 1_555 I C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 172 A ASN 167 1_555 J C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale4 B ND2 ASN 16 C ASN 11 1_555 L C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale5 B ND2 ASN 28 C ASN 23 1_555 M C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B ND2 ASN 172 C ASN 167 1_555 N C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale7 C ND2 ASN 16 E ASN 11 1_555 P C1 NAG . E NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale8 C ND2 ASN 28 E ASN 23 1_555 Q C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale9 C ND2 ASN 172 E ASN 167 1_555 R C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale10 G O3 NAG . G NAG 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 342 n n C1 O1A SIA doub 343 n n C1 O1B SIA sing 344 n n C2 C3 SIA sing 345 n n C2 O2 SIA sing 346 n n C2 O6 SIA sing 347 n n C3 C4 SIA sing 348 n n C3 H32 SIA sing 349 n n C3 H31 SIA sing 350 n n C4 C5 SIA sing 351 n n C4 O4 SIA sing 352 n n C4 H4 SIA sing 353 n n C5 C6 SIA sing 354 n n C5 N5 SIA sing 355 n n C5 H5 SIA sing 356 n n C6 C7 SIA sing 357 n n C6 O6 SIA sing 358 n n C6 H6 SIA sing 359 n n C7 C8 SIA sing 360 n n C7 O7 SIA sing 361 n n C7 H7 SIA sing 362 n n C8 C9 SIA sing 363 n n C8 O8 SIA sing 364 n n C8 H8 SIA sing 365 n n C9 O9 SIA sing 366 n n C9 H92 SIA sing 367 n n C9 H91 SIA sing 368 n n C10 C11 SIA sing 369 n n C10 N5 SIA sing 370 n n C10 O10 SIA doub 371 n n C11 H111 SIA sing 372 n n C11 H113 SIA sing 373 n n C11 H112 SIA sing 374 n n N5 HN5 SIA sing 375 n n O1B HO1B SIA sing 376 n n O2 HO2 SIA sing 377 n n O4 HO4 SIA sing 378 n n O7 HO7 SIA sing 379 n n O8 HO8 SIA sing 380 n n O9 HO9 SIA sing 381 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4WSU _atom_sites.fract_transf_matrix[1][1] 0.005348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 NAG A 1 401 401 NAG NAG . I 4 NAG A 1 402 402 NAG NAG . J 4 NAG A 1 403 403 NAG NAG . K 5 SIA A 1 404 404 SIA SIA . L 4 NAG C 1 401 401 NAG NAG . M 4 NAG C 1 402 402 NAG NAG . N 4 NAG C 1 403 403 NAG NAG . O 5 SIA C 1 404 404 SIA SIA . P 4 NAG E 1 400 400 NAG NAG . Q 4 NAG E 1 401 401 NAG NAG . R 4 NAG E 1 402 402 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . K 5 -74.034 44.25 -13.826 1 62.83 ? C1 SIA 404 A 1 HETATM 2 C C2 SIA . . . K 5 -75.445 44.623 -14.256 1 61.58 ? C2 SIA 404 A 1 HETATM 3 C C3 SIA . . . K 5 -75.786 43.844 -15.564 1 52.95 ? C3 SIA 404 A 1 HETATM 4 C C4 SIA . . . K 5 -75.748 42.297 -15.427 1 49.44 ? C4 SIA 404 A 1 HETATM 5 C C5 SIA . . . K 5 -76.584 41.806 -14.244 1 50.04 ? C5 SIA 404 A 1 HETATM 6 C C6 SIA . . . K 5 -76.189 42.598 -13.006 1 53.2 ? C6 SIA 404 A 1 HETATM 7 C C7 SIA . . . K 5 -76.918 42.132 -11.724 1 52.36 ? C7 SIA 404 A 1 HETATM 8 C C8 SIA . . . K 5 -76.669 43.098 -10.557 1 54.03 ? C8 SIA 404 A 1 HETATM 9 C C9 SIA . . . K 5 -77.199 42.645 -9.184 1 56.36 ? C9 SIA 404 A 1 HETATM 10 C C10 SIA . . . K 5 -77.214 39.433 -13.717 1 57.26 ? C10 SIA 404 A 1 HETATM 11 C C11 SIA . . . K 5 -78.668 39.632 -14.081 1 56.77 ? C11 SIA 404 A 1 HETATM 12 N N5 SIA . . . K 5 -76.322 40.439 -13.844 1 53.39 ? N5 SIA 404 A 1 HETATM 13 O O1A SIA . . . K 5 -73.204 44.129 -14.755 1 65.36 ? O1A SIA 404 A 1 HETATM 14 O O1B SIA . . . K 5 -73.724 44.107 -12.606 1 56.66 ? O1B SIA 404 A 1 HETATM 15 O O4 SIA . . . K 5 -76.195 41.644 -16.623 1 44.33 ? O4 SIA 404 A 1 HETATM 16 O O6 SIA . . . K 5 -76.335 44.012 -13.282 1 58.23 ? O6 SIA 404 A 1 HETATM 17 O O7 SIA . . . K 5 -78.328 41.92 -11.926 1 45.25 ? O7 SIA 404 A 1 HETATM 18 O O8 SIA . . . K 5 -75.258 43.316 -10.472 1 52.44 ? O8 SIA 404 A 1 HETATM 19 O O9 SIA . . . K 5 -76.971 43.656 -8.181 1 60.63 ? O9 SIA 404 A 1 HETATM 20 O O10 SIA . . . K 5 -76.822 38.335 -13.332 1 55.52 ? O10 SIA 404 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #