data_4WSV
#
_model_server_result.job_id            riC2BQwcChDP88ixGlLUTA 
_model_server_result.datetime_utc      '2024-11-28 17:16:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wsv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":404}' 
#
_entry.id    4WSV 
#
_exptl.entry_id    4WSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.27 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-acetyl-alpha-neuraminic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.96 
_cell.angle_gamma         90 
_cell.entry_id            4WSV 
_cell.length_a            186.438 
_cell.length_b            99.584 
_cell.length_c            134.216 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 4 1_555 D SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 47 A CYS 42 1_555 A SG CYS 282 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 60 A CYS 55 1_555 A SG CYS 72 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 95 A CYS 90 1_555 A SG CYS 140 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 286 A CYS 281 1_555 A SG CYS 310 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 B SG CYS 9 C CYS 4 1_555 E SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 B SG CYS 47 C CYS 42 1_555 B SG CYS 282 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 60 C CYS 55 1_555 B SG CYS 72 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
disulf ? disulf9 B SG CYS 95 C CYS 90 1_555 B SG CYS 140 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 B SG CYS 286 C CYS 281 1_555 B SG CYS 310 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 C SG CYS 9 E CYS 4 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 47 E CYS 42 1_555 C SG CYS 282 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 C SG CYS 60 E CYS 55 1_555 C SG CYS 72 E CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 C SG CYS 95 E CYS 90 1_555 C SG CYS 140 E CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 C SG CYS 286 E CYS 281 1_555 C SG CYS 310 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 D SG CYS 144 B CYS 144 1_555 D SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 E SG CYS 144 D CYS 144 1_555 E SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 16 A ASN 11 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale2 A ND2 ASN 28 A ASN 23 1_555 H C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale3 A ND2 ASN 172 A ASN 167 1_555 I C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 B ND2 ASN 16 C ASN 11 1_555 K C1 NAG . C NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 B ND2 ASN 28 C ASN 23 1_555 L C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale6 B ND2 ASN 172 C ASN 167 1_555 M C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 C ND2 ASN 16 E ASN 11 1_555 N C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 C ND2 ASN 28 E ASN 23 1_555 O C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale9 C ND2 ASN 172 E ASN 167 1_555 P C1 NAG . E NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C11 H19 N O9' 
_chem_comp.formula_weight    309.27 
_chem_comp.id                SIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-acetyl-alpha-neuraminic acid' 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SIA sing 318 n n 
C1 O1A SIA doub 319 n n 
C1 O1B SIA sing 320 n n 
C2 C3 SIA sing 321 n n 
C2 O2 SIA sing 322 n n 
C2 O6 SIA sing 323 n n 
C3 C4 SIA sing 324 n n 
C3 H32 SIA sing 325 n n 
C3 H31 SIA sing 326 n n 
C4 C5 SIA sing 327 n n 
C4 O4 SIA sing 328 n n 
C4 H4 SIA sing 329 n n 
C5 C6 SIA sing 330 n n 
C5 N5 SIA sing 331 n n 
C5 H5 SIA sing 332 n n 
C6 C7 SIA sing 333 n n 
C6 O6 SIA sing 334 n n 
C6 H6 SIA sing 335 n n 
C7 C8 SIA sing 336 n n 
C7 O7 SIA sing 337 n n 
C7 H7 SIA sing 338 n n 
C8 C9 SIA sing 339 n n 
C8 O8 SIA sing 340 n n 
C8 H8 SIA sing 341 n n 
C9 O9 SIA sing 342 n n 
C9 H92 SIA sing 343 n n 
C9 H91 SIA sing 344 n n 
C10 C11 SIA sing 345 n n 
C10 N5 SIA sing 346 n n 
C10 O10 SIA doub 347 n n 
C11 H111 SIA sing 348 n n 
C11 H113 SIA sing 349 n n 
C11 H112 SIA sing 350 n n 
N5 HN5 SIA sing 351 n n 
O1B HO1B SIA sing 352 n n 
O2 HO2 SIA sing 353 n n 
O4 HO4 SIA sing 354 n n 
O7 HO7 SIA sing 355 n n 
O8 HO8 SIA sing 356 n n 
O9 HO9 SIA sing 357 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 
SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4WSV 
_atom_sites.fract_transf_matrix[1][1]    0.005364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003892 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG A 1 401 400 NAG NAG . 
H 3 NAG A 1 402 401 NAG NAG . 
I 3 NAG A 1 403 402 NAG NAG . 
J 4 SIA A 1 404 405 SIA SIA . 
K 3 NAG C 1 400 400 NAG NAG . 
L 3 NAG C 1 401 401 NAG NAG . 
M 3 NAG C 1 402 402 NAG NAG . 
N 3 NAG E 1 401 400 NAG NAG . 
O 3 NAG E 1 402 401 NAG NAG . 
P 3 NAG E 1 403 402 NAG NAG . 
Q 4 SIA E 1 404 405 SIA SIA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIA . . . Q 4 -88.781 33.544 33.757 1 136.55 ? C1 SIA 404 E 1 
HETATM 2 C C2 SIA . . . Q 4 -89.741 34.112 32.749 1 136.98 ? C2 SIA 404 E 1 
HETATM 3 C C3 SIA . . . Q 4 -89.805 35.647 32.758 1 136.83 ? C3 SIA 404 E 1 
HETATM 4 C C4 SIA . . . Q 4 -89.14 36.387 31.648 1 136.5 ? C4 SIA 404 E 1 
HETATM 5 C C5 SIA . . . Q 4 -89.113 35.683 30.347 1 135.57 ? C5 SIA 404 E 1 
HETATM 6 C C6 SIA . . . Q 4 -88.597 34.305 30.535 1 136.24 ? C6 SIA 404 E 1 
HETATM 7 C C7 SIA . . . Q 4 -88.314 33.587 29.212 1 136.83 ? C7 SIA 404 E 1 
HETATM 8 C C8 SIA . . . Q 4 -88.938 32.216 29.185 1 137.24 ? C8 SIA 404 E 1 
HETATM 9 C C9 SIA . . . Q 4 -87.977 31.276 28.405 1 128.42 ? C9 SIA 404 E 1 
HETATM 10 C C10 SIA . . . Q 4 -88.841 37.173 28.26 1 133.04 ? C10 SIA 404 E 1 
HETATM 11 C C11 SIA . . . Q 4 -90.366 37.124 28.029 1 132.77 ? C11 SIA 404 E 1 
HETATM 12 N N5 SIA . . . Q 4 -88.247 36.456 29.394 1 133.96 ? N5 SIA 404 E 1 
HETATM 13 O O1A SIA . . . Q 4 -87.543 33.779 33.656 1 136.84 ? O1A SIA 404 E 1 
HETATM 14 O O1B SIA . . . Q 4 -89.199 32.837 34.695 1 135.72 ? O1B SIA 404 E 1 
HETATM 15 O O4 SIA . . . Q 4 -89.818 37.645 31.481 1 136.67 ? O4 SIA 404 E 1 
HETATM 16 O O6 SIA . . . Q 4 -89.528 33.534 31.338 1 136.72 ? O6 SIA 404 E 1 
HETATM 17 O O7 SIA . . . Q 4 -88.772 34.313 28.107 1 136.57 ? O7 SIA 404 E 1 
HETATM 18 O O8 SIA . . . Q 4 -89.101 31.716 30.465 1 137.65 ? O8 SIA 404 E 1 
HETATM 19 O O9 SIA . . . Q 4 -87.462 30.278 29.294 1 128.08 ? O9 SIA 404 E 1 
HETATM 20 O O10 SIA . . . Q 4 -88.132 37.796 27.491 1 132.48 ? O10 SIA 404 E 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#