data_4WTD
#
_model_server_result.job_id            Utw57tCKmNWr78bdNW8qXg 
_model_server_result.datetime_utc      '2024-11-09 02:10:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wtd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    4WTD 
#
_exptl.entry_id    4WTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WTD 
_cell.length_a            141.25 
_cell.length_b            141.25 
_cell.length_c            91.19 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O3' U 8 P U 8 1_555 D MN MN . P MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc2 D MN MN . P MN 601 1_555 E O1A ADP . P ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc3 D MN MN . P MN 601 1_555 J O HOH . P HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc4 D MN MN . P MN 601 1_555 C OD1 ASP 222 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc5 D MN MN . P MN 601 1_555 C OD1 ASP 320 A ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc6 D MN MN . P MN 601 1_555 C OD1 ASP 321 A ASP 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc7 E O1B ADP . P ADP 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc8 E O1A ADP . P ADP 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc9 J O HOH . P HOH 705 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc10 C OD2 ASP 222 A ASP 220 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc11 C O THR 223 A THR 221 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc12 C OE2 GLU 239 A GLU 237 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc13 C ND1 HIS 256 A HIS 254 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc14 C OD2 ASP 320 A ASP 318 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
hydrog WATSON-CRICK hydrog1 A N1 A 3 T A 3 1_555 B N3 U 8 P U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 A 3 T A 3 1_555 B O4 U 8 P U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 A 4 T A 4 1_555 B N3 U 7 P U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N6 A 4 T A 4 1_555 B O4 U 7 P U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N1 A 5 T A 5 1_555 B N3 U 6 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N6 A 5 T A 5 1_555 B O4 U 6 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 U 6 T U 6 1_555 B N1 A 5 P A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 U 6 T U 6 1_555 B N6 A 5 P A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 U 7 T U 7 1_555 B N1 A 4 P A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O4 U 7 T U 7 1_555 B N6 A 4 P A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4WTD 
_atom_sites.fract_transf_matrix[1][1]    0.00708 
_atom_sites.fract_transf_matrix[1][2]    0.004087 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 MN P 1 601 1 MN MN . 
E 4 ADP P 1 602 1 ADP ADP . 
F 3 MN A 1 601 2 MN MN . 
G 3 MN A 1 602 3 MN MN . 
H 5 CL A 1 603 1 CL CL . 
I 6 HOH T 1 101 51 HOH HOH . 
J 6 HOH P 1 701 45 HOH HOH . 
J 6 HOH P 2 702 46 HOH HOH . 
J 6 HOH P 3 703 47 HOH HOH . 
J 6 HOH P 4 704 1 HOH HOH . 
J 6 HOH P 5 705 2 HOH HOH . 
K 6 HOH A 1 701 48 HOH HOH . 
K 6 HOH A 2 702 40 HOH HOH . 
K 6 HOH A 3 703 49 HOH HOH . 
K 6 HOH A 4 704 5 HOH HOH . 
K 6 HOH A 5 705 24 HOH HOH . 
K 6 HOH A 6 706 28 HOH HOH . 
K 6 HOH A 7 707 8 HOH HOH . 
K 6 HOH A 8 708 22 HOH HOH . 
K 6 HOH A 9 709 3 HOH HOH . 
K 6 HOH A 10 710 4 HOH HOH . 
K 6 HOH A 11 711 6 HOH HOH . 
K 6 HOH A 12 712 7 HOH HOH . 
K 6 HOH A 13 713 9 HOH HOH . 
K 6 HOH A 14 714 10 HOH HOH . 
K 6 HOH A 15 715 11 HOH HOH . 
K 6 HOH A 16 716 12 HOH HOH . 
K 6 HOH A 17 717 13 HOH HOH . 
K 6 HOH A 18 718 14 HOH HOH . 
K 6 HOH A 19 719 15 HOH HOH . 
K 6 HOH A 20 720 16 HOH HOH . 
K 6 HOH A 21 721 17 HOH HOH . 
K 6 HOH A 22 722 18 HOH HOH . 
K 6 HOH A 23 723 19 HOH HOH . 
K 6 HOH A 24 724 20 HOH HOH . 
K 6 HOH A 25 725 21 HOH HOH . 
K 6 HOH A 26 726 23 HOH HOH . 
K 6 HOH A 27 727 25 HOH HOH . 
K 6 HOH A 28 728 26 HOH HOH . 
K 6 HOH A 29 729 27 HOH HOH . 
K 6 HOH A 30 730 29 HOH HOH . 
K 6 HOH A 31 731 30 HOH HOH . 
K 6 HOH A 32 732 31 HOH HOH . 
K 6 HOH A 33 733 32 HOH HOH . 
K 6 HOH A 34 734 33 HOH HOH . 
K 6 HOH A 35 735 34 HOH HOH . 
K 6 HOH A 36 736 35 HOH HOH . 
K 6 HOH A 37 737 36 HOH HOH . 
K 6 HOH A 38 738 37 HOH HOH . 
K 6 HOH A 39 739 38 HOH HOH . 
K 6 HOH A 40 740 39 HOH HOH . 
K 6 HOH A 41 741 41 HOH HOH . 
K 6 HOH A 42 742 42 HOH HOH . 
K 6 HOH A 43 743 43 HOH HOH . 
K 6 HOH A 44 744 44 HOH HOH . 
K 6 HOH A 45 745 50 HOH HOH . 
K 6 HOH A 46 746 52 HOH HOH . 
K 6 HOH A 47 747 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               45.703 
_atom_site.Cartn_y               -47.417 
_atom_site.Cartn_z               2.54 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        43.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          P 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#