data_4WTG
#
_model_server_result.job_id            4KcI24AcykWfCace2TGfJw 
_model_server_result.datetime_utc      '2024-11-22 05:15:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wtg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    4WTG 
#
_exptl.entry_id    4WTG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.179 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WTG 
_cell.length_a            140.44 
_cell.length_b            140.44 
_cell.length_c            91.62 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WTG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O3' U 8 P U 6 1_555 D MN MN . P MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc2 D MN MN . P MN 601 1_555 E O2A 6GS . P 6GS 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc3 D MN MN . P MN 601 1_555 J O HOH . P HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc4 D MN MN . P MN 601 1_555 C OD1 ASP 222 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 D MN MN . P MN 601 1_555 C OD1 ASP 320 A ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc6 D MN MN . P MN 601 1_555 C OD1 ASP 321 A ASP 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc7 E O2A 6GS . P 6GS 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc8 E O2B 6GS . P 6GS 602 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc9 J O HOH . P HOH 702 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc10 C OD2 ASP 222 A ASP 220 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc11 C O THR 223 A THR 221 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc12 C OE2 GLU 239 A GLU 237 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc13 C ND1 HIS 256 A HIS 254 1_555 G MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc14 C OD2 ASP 320 A ASP 318 1_555 F MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
hydrog WATSON-CRICK hydrog1 A N1 A 3 T A 3 1_555 B N3 U 8 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 A 3 T A 3 1_555 B O4 U 8 P U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 A 4 T A 4 1_555 B N3 U 7 P U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N6 A 4 T A 4 1_555 B O4 U 7 P U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N1 A 5 T A 5 1_555 B N3 U 6 P U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N6 A 5 T A 5 1_555 B O4 U 6 P U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 U 6 T U 6 1_555 B N1 A 5 P A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 U 6 T U 6 1_555 B N6 A 5 P A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'U-A PAIR' hydrog9 A N3 U 7 T U 7 1_555 B N1 A 4 P A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H15 F N2 O11 P2' 
_chem_comp.formula_weight    420.179 
_chem_comp.id                6GS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2B PB 6GS sing 1 n n 
O1B PB 6GS doub 2 n n 
PB O3B 6GS sing 3 n n 
PB O3A 6GS sing 4 n n 
O2A PA 6GS sing 5 n n 
O3' C3' 6GS sing 6 n n 
C5' C4' 6GS sing 7 n n 
C5' O5' 6GS sing 8 n n 
O3A PA 6GS sing 9 n n 
PA O5' 6GS sing 10 n n 
PA O1A 6GS doub 11 n n 
C4' C3' 6GS sing 12 n n 
C4' O4' 6GS sing 13 n n 
C3' C2' 6GS sing 14 n n 
F C2' 6GS sing 15 n n 
O4' C1' 6GS sing 16 n n 
C2' C1' 6GS sing 17 n n 
C2' C2M 6GS sing 18 n n 
C1' N1 6GS sing 19 n n 
N1 C6 6GS sing 20 n n 
N1 C2 6GS sing 21 n n 
C6 C5 6GS doub 22 n n 
C2 O2 6GS doub 23 n n 
C2 N3 6GS sing 24 n n 
C5 C4 6GS sing 25 n n 
N3 C4 6GS sing 26 n n 
C4 O4 6GS doub 27 n n 
N3 H1 6GS sing 28 n n 
C5 H2 6GS sing 29 n n 
C2M H3 6GS sing 30 n n 
C2M H4 6GS sing 31 n n 
C2M H5 6GS sing 32 n n 
C1' H6 6GS sing 33 n n 
C6 H7 6GS sing 34 n n 
C3' H8 6GS sing 35 n n 
O3' H9 6GS sing 36 n n 
C4' H10 6GS sing 37 n n 
C5' H11 6GS sing 38 n n 
C5' H12 6GS sing 39 n n 
O2A H14 6GS sing 40 n n 
O3B H15 6GS sing 41 n n 
O2B H17 6GS sing 42 n n 
#
_atom_sites.entry_id                     4WTG 
_atom_sites.fract_transf_matrix[1][1]    0.00712 
_atom_sites.fract_transf_matrix[1][2]    0.004111 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 MN P 1 601 1 MN MN . 
E 4 6GS P 1 602 1 6GS 596 . 
F 3 MN A 1 601 2 MN MN . 
G 3 MN A 1 602 3 MN MN . 
H 5 CL A 1 603 1 CL CL . 
I 6 HOH T 1 101 23 HOH HOH . 
J 6 HOH P 1 701 5 HOH HOH . 
J 6 HOH P 2 702 48 HOH HOH . 
K 6 HOH A 1 701 41 HOH HOH . 
K 6 HOH A 2 702 58 HOH HOH . 
K 6 HOH A 3 703 26 HOH HOH . 
K 6 HOH A 4 704 3 HOH HOH . 
K 6 HOH A 5 705 13 HOH HOH . 
K 6 HOH A 6 706 12 HOH HOH . 
K 6 HOH A 7 707 7 HOH HOH . 
K 6 HOH A 8 708 45 HOH HOH . 
K 6 HOH A 9 709 54 HOH HOH . 
K 6 HOH A 10 710 52 HOH HOH . 
K 6 HOH A 11 711 32 HOH HOH . 
K 6 HOH A 12 712 59 HOH HOH . 
K 6 HOH A 13 713 53 HOH HOH . 
K 6 HOH A 14 714 9 HOH HOH . 
K 6 HOH A 15 715 11 HOH HOH . 
K 6 HOH A 16 716 50 HOH HOH . 
K 6 HOH A 17 717 51 HOH HOH . 
K 6 HOH A 18 718 1 HOH HOH . 
K 6 HOH A 19 719 2 HOH HOH . 
K 6 HOH A 20 720 4 HOH HOH . 
K 6 HOH A 21 721 6 HOH HOH . 
K 6 HOH A 22 722 8 HOH HOH . 
K 6 HOH A 23 723 10 HOH HOH . 
K 6 HOH A 24 724 14 HOH HOH . 
K 6 HOH A 25 725 15 HOH HOH . 
K 6 HOH A 26 726 16 HOH HOH . 
K 6 HOH A 27 727 17 HOH HOH . 
K 6 HOH A 28 728 18 HOH HOH . 
K 6 HOH A 29 729 19 HOH HOH . 
K 6 HOH A 30 730 20 HOH HOH . 
K 6 HOH A 31 731 21 HOH HOH . 
K 6 HOH A 32 732 22 HOH HOH . 
K 6 HOH A 33 733 24 HOH HOH . 
K 6 HOH A 34 734 25 HOH HOH . 
K 6 HOH A 35 735 27 HOH HOH . 
K 6 HOH A 36 736 28 HOH HOH . 
K 6 HOH A 37 737 29 HOH HOH . 
K 6 HOH A 38 738 30 HOH HOH . 
K 6 HOH A 39 739 31 HOH HOH . 
K 6 HOH A 40 740 33 HOH HOH . 
K 6 HOH A 41 741 34 HOH HOH . 
K 6 HOH A 42 742 35 HOH HOH . 
K 6 HOH A 43 743 36 HOH HOH . 
K 6 HOH A 44 744 37 HOH HOH . 
K 6 HOH A 45 745 38 HOH HOH . 
K 6 HOH A 46 746 39 HOH HOH . 
K 6 HOH A 47 747 40 HOH HOH . 
K 6 HOH A 48 748 42 HOH HOH . 
K 6 HOH A 49 749 43 HOH HOH . 
K 6 HOH A 50 750 44 HOH HOH . 
K 6 HOH A 51 751 46 HOH HOH . 
K 6 HOH A 52 752 47 HOH HOH . 
K 6 HOH A 53 753 49 HOH HOH . 
K 6 HOH A 54 754 55 HOH HOH . 
K 6 HOH A 55 755 56 HOH HOH . 
K 6 HOH A 56 756 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6GS . . . E 4 39.123 -46.177 8.492 1 74.97 ? C2 6GS 602 P 1 
HETATM 2 N N3 6GS . . . E 4 39.586 -45.689 9.666 1 76.04 ? N3 6GS 602 P 1 
HETATM 3 C C4 6GS . . . E 4 40.788 -45.072 9.713 1 78.47 ? C4 6GS 602 P 1 
HETATM 4 C C5 6GS . . . E 4 41.554 -44.931 8.556 1 77.27 ? C5 6GS 602 P 1 
HETATM 5 F F 6GS . . . E 4 37.628 -45.896 4.586 1 88.35 ? F 6GS 602 P 1 
HETATM 6 C C2' 6GS . . . E 4 38.653 -45.408 5.27 1 79.62 ? C2' 6GS 602 P 1 
HETATM 7 C C2M 6GS . . . E 4 38.101 -44.222 6.067 1 88.81 ? C2M 6GS 602 P 1 
HETATM 8 C C1' 6GS . . . E 4 39.309 -46.56 6.061 1 75.29 ? C1' 6GS 602 P 1 
HETATM 9 N N1 6GS . . . E 4 39.842 -46.057 7.341 1 75.41 ? N1 6GS 602 P 1 
HETATM 10 O O2 6GS . . . E 4 37.912 -46.787 8.524 1 71.93 ? O2 6GS 602 P 1 
HETATM 11 O O4 6GS . . . E 4 41.241 -44.59 10.892 1 76.93 ? O4 6GS 602 P 1 
HETATM 12 C C6 6GS . . . E 4 41.048 -45.436 7.362 1 75.69 ? C6 6GS 602 P 1 
HETATM 13 O O4' 6GS . . . E 4 40.334 -47.082 5.201 1 75.43 ? O4' 6GS 602 P 1 
HETATM 14 C C3' 6GS . . . E 4 39.766 -44.98 4.32 1 74.89 ? C3' 6GS 602 P 1 
HETATM 15 O O3' 6GS . . . E 4 39.316 -44.236 3.175 1 72.81 ? O3' 6GS 602 P 1 
HETATM 16 C C4' 6GS . . . E 4 40.382 -46.325 3.969 1 73.16 ? C4' 6GS 602 P 1 
HETATM 17 C C5' 6GS . . . E 4 41.764 -46.239 3.3 1 69.29 ? C5' 6GS 602 P 1 
HETATM 18 O O5' 6GS . . . E 4 42.789 -45.822 4.197 1 64.87 ? O5' 6GS 602 P 1 
HETATM 19 P PA 6GS . . . E 4 43.966 -44.784 3.852 1 57.84 ? PA 6GS 602 P 1 
HETATM 20 O O1A 6GS . . . E 4 44.721 -44.896 5.143 1 61.42 ? O1A 6GS 602 P 1 
HETATM 21 O O2A 6GS . . . E 4 44.663 -45.124 2.55 1 56.5 ? O2A 6GS 602 P 1 
HETATM 22 O O3A 6GS . . . E 4 43.248 -43.322 3.769 1 55.31 ? O3A 6GS 602 P 1 
HETATM 23 P PB 6GS . . . E 4 42.419 -42.678 2.513 1 56.21 ? PB 6GS 602 P 1 
HETATM 24 O O3B 6GS . . . E 4 41.019 -42.464 3.038 1 56.04 ? O3B 6GS 602 P 1 
HETATM 25 O O1B 6GS . . . E 4 43.064 -41.318 2.261 1 50.96 ? O1B 6GS 602 P 1 
HETATM 26 O O2B 6GS . . . E 4 42.472 -43.708 1.392 1 48.54 ? O2B 6GS 602 P 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           855 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           26 
#