data_4WTK # _model_server_result.job_id dT-1DFPRYMHbFoLsRmodFg _model_server_result.datetime_utc '2024-11-25 15:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4WTK # _exptl.entry_id 4WTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WTK _cell.length_a 140.23 _cell.length_b 140.23 _cell.length_c 92.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3' G 2 P G 2 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 C OD2 ASP 222 A ASP 220 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C OD1 ASP 222 A ASP 220 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 C O THR 223 A THR 221 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 C OE2 GLU 239 A GLU 237 1_555 F MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 C ND1 HIS 256 A HIS 254 1_555 F MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 C OD1 ASP 320 A ASP 318 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 C OD2 ASP 320 A ASP 318 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 C OD1 ASP 321 A ASP 319 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 D MN MN . A MN 601 1_555 H O1A CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc11 D MN MN . A MN 601 1_555 N O HOH . A HOH 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 E MN MN . A MN 602 1_555 H O1B CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 E MN MN . A MN 602 1_555 H O1A CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc14 E MN MN . A MN 602 1_555 N O HOH . A HOH 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? hydrog WATSON-CRICK hydrog1 A N3 C 3 T C 3 1_555 B N1 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 3 T C 3 1_555 B O6 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 3 T C 3 1_555 B N2 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 4 T C 4 1_555 B N1 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 4 T C 4 1_555 B O6 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 4 T C 4 1_555 B N2 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WTK _atom_sites.fract_transf_matrix[1][1] 0.007131 _atom_sites.fract_transf_matrix[1][2] 0.004117 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 601 1 MN MN . E 4 MN A 1 602 2 MN MN . F 4 MN A 1 603 3 MN MN . G 5 CL A 1 604 4 CL CL . H 6 CDP A 1 605 1 CDP CDP . I 7 PG6 A 1 606 1 PG6 PG6 . J 8 B3P A 1 607 2 B3P B3P . K 9 EDO A 1 608 1 EDO EDO . L 10 HOH T 1 101 99 HOH HOH . M 10 HOH P 1 101 69 HOH HOH . M 10 HOH P 2 102 98 HOH HOH . M 10 HOH P 3 103 100 HOH HOH . M 10 HOH P 4 104 101 HOH HOH . N 10 HOH A 1 701 28 HOH HOH . N 10 HOH A 2 702 16 HOH HOH . N 10 HOH A 3 703 82 HOH HOH . N 10 HOH A 4 704 8 HOH HOH . N 10 HOH A 5 705 6 HOH HOH . N 10 HOH A 6 706 37 HOH HOH . N 10 HOH A 7 707 78 HOH HOH . N 10 HOH A 8 708 39 HOH HOH . N 10 HOH A 9 709 27 HOH HOH . N 10 HOH A 10 710 54 HOH HOH . N 10 HOH A 11 711 43 HOH HOH . N 10 HOH A 12 712 109 HOH HOH . N 10 HOH A 13 713 88 HOH HOH . N 10 HOH A 14 714 1 HOH HOH . N 10 HOH A 15 715 80 HOH HOH . N 10 HOH A 16 716 40 HOH HOH . N 10 HOH A 17 717 102 HOH HOH . N 10 HOH A 18 718 60 HOH HOH . N 10 HOH A 19 719 38 HOH HOH . N 10 HOH A 20 720 96 HOH HOH . N 10 HOH A 21 721 18 HOH HOH . N 10 HOH A 22 722 29 HOH HOH . N 10 HOH A 23 723 95 HOH HOH . N 10 HOH A 24 724 114 HOH HOH . N 10 HOH A 25 725 41 HOH HOH . N 10 HOH A 26 726 2 HOH HOH . N 10 HOH A 27 727 3 HOH HOH . N 10 HOH A 28 728 4 HOH HOH . N 10 HOH A 29 729 5 HOH HOH . N 10 HOH A 30 730 7 HOH HOH . N 10 HOH A 31 731 9 HOH HOH . N 10 HOH A 32 732 10 HOH HOH . N 10 HOH A 33 733 11 HOH HOH . N 10 HOH A 34 734 12 HOH HOH . N 10 HOH A 35 735 13 HOH HOH . N 10 HOH A 36 736 14 HOH HOH . N 10 HOH A 37 737 15 HOH HOH . N 10 HOH A 38 738 17 HOH HOH . N 10 HOH A 39 739 19 HOH HOH . N 10 HOH A 40 740 20 HOH HOH . N 10 HOH A 41 741 21 HOH HOH . N 10 HOH A 42 742 22 HOH HOH . N 10 HOH A 43 743 23 HOH HOH . N 10 HOH A 44 744 24 HOH HOH . N 10 HOH A 45 745 25 HOH HOH . N 10 HOH A 46 746 26 HOH HOH . N 10 HOH A 47 747 30 HOH HOH . N 10 HOH A 48 748 31 HOH HOH . N 10 HOH A 49 749 32 HOH HOH . N 10 HOH A 50 750 33 HOH HOH . N 10 HOH A 51 751 34 HOH HOH . N 10 HOH A 52 752 35 HOH HOH . N 10 HOH A 53 753 36 HOH HOH . N 10 HOH A 54 754 42 HOH HOH . N 10 HOH A 55 755 44 HOH HOH . N 10 HOH A 56 756 45 HOH HOH . N 10 HOH A 57 757 46 HOH HOH . N 10 HOH A 58 758 47 HOH HOH . N 10 HOH A 59 759 48 HOH HOH . N 10 HOH A 60 760 49 HOH HOH . N 10 HOH A 61 761 50 HOH HOH . N 10 HOH A 62 762 51 HOH HOH . N 10 HOH A 63 763 52 HOH HOH . N 10 HOH A 64 764 53 HOH HOH . N 10 HOH A 65 765 55 HOH HOH . N 10 HOH A 66 766 56 HOH HOH . N 10 HOH A 67 767 57 HOH HOH . N 10 HOH A 68 768 58 HOH HOH . N 10 HOH A 69 769 59 HOH HOH . N 10 HOH A 70 770 61 HOH HOH . N 10 HOH A 71 771 62 HOH HOH . N 10 HOH A 72 772 63 HOH HOH . N 10 HOH A 73 773 64 HOH HOH . N 10 HOH A 74 774 65 HOH HOH . N 10 HOH A 75 775 66 HOH HOH . N 10 HOH A 76 776 67 HOH HOH . N 10 HOH A 77 777 68 HOH HOH . N 10 HOH A 78 778 70 HOH HOH . N 10 HOH A 79 779 71 HOH HOH . N 10 HOH A 80 780 72 HOH HOH . N 10 HOH A 81 781 73 HOH HOH . N 10 HOH A 82 782 74 HOH HOH . N 10 HOH A 83 783 75 HOH HOH . N 10 HOH A 84 784 76 HOH HOH . N 10 HOH A 85 785 77 HOH HOH . N 10 HOH A 86 786 79 HOH HOH . N 10 HOH A 87 787 81 HOH HOH . N 10 HOH A 88 788 83 HOH HOH . N 10 HOH A 89 789 84 HOH HOH . N 10 HOH A 90 790 85 HOH HOH . N 10 HOH A 91 791 86 HOH HOH . N 10 HOH A 92 792 87 HOH HOH . N 10 HOH A 93 793 89 HOH HOH . N 10 HOH A 94 794 90 HOH HOH . N 10 HOH A 95 795 91 HOH HOH . N 10 HOH A 96 796 92 HOH HOH . N 10 HOH A 97 797 93 HOH HOH . N 10 HOH A 98 798 94 HOH HOH . N 10 HOH A 99 799 97 HOH HOH . N 10 HOH A 100 800 103 HOH HOH . N 10 HOH A 101 801 104 HOH HOH . N 10 HOH A 102 802 105 HOH HOH . N 10 HOH A 103 803 106 HOH HOH . N 10 HOH A 104 804 107 HOH HOH . N 10 HOH A 105 805 108 HOH HOH . N 10 HOH A 106 806 110 HOH HOH . N 10 HOH A 107 807 111 HOH HOH . N 10 HOH A 108 808 112 HOH HOH . N 10 HOH A 109 809 113 HOH HOH . N 10 HOH A 110 810 115 HOH HOH . N 10 HOH A 111 811 116 HOH HOH . N 10 HOH A 112 812 117 HOH HOH . N 10 HOH A 113 813 118 HOH HOH . N 10 HOH A 114 814 119 HOH HOH . N 10 HOH A 115 815 120 HOH HOH . N 10 HOH A 116 816 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 45.519 _atom_site.Cartn_y -46.789 _atom_site.Cartn_z 2.438 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #