data_4WTK # _model_server_result.job_id nrABr_nmaHnllDaG3voC_g _model_server_result.datetime_utc '2024-10-10 11:20:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":607}' # _entry.id 4WTK # _exptl.entry_id 4WTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WTK _cell.length_a 140.23 _cell.length_b 140.23 _cell.length_c 92.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3' G 2 P G 2 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 C OD2 ASP 222 A ASP 220 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 C OD1 ASP 222 A ASP 220 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 C O THR 223 A THR 221 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 C OE2 GLU 239 A GLU 237 1_555 F MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 C ND1 HIS 256 A HIS 254 1_555 F MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 C OD1 ASP 320 A ASP 318 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 C OD2 ASP 320 A ASP 318 1_555 E MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 C OD1 ASP 321 A ASP 319 1_555 D MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 D MN MN . A MN 601 1_555 H O1A CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc11 D MN MN . A MN 601 1_555 N O HOH . A HOH 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 E MN MN . A MN 602 1_555 H O1B CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 E MN MN . A MN 602 1_555 H O1A CDP . A CDP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc14 E MN MN . A MN 602 1_555 N O HOH . A HOH 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? hydrog WATSON-CRICK hydrog1 A N3 C 3 T C 3 1_555 B N1 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 3 T C 3 1_555 B O6 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 3 T C 3 1_555 B N2 G 2 P G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 4 T C 4 1_555 B N1 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 4 T C 4 1_555 B O6 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 4 T C 4 1_555 B N2 G 1 P G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 109 n n C1 C3 B3P sing 110 n n C1 H11 B3P sing 111 n n C1 H12 B3P sing 112 n n C2 N2 B3P sing 113 n n C2 H21 B3P sing 114 n n C2 H22 B3P sing 115 n n C3 N1 B3P sing 116 n n C3 H31 B3P sing 117 n n C3 H32 B3P sing 118 n n N1 C4 B3P sing 119 n n N1 HN1 B3P sing 120 n n C4 C5 B3P sing 121 n n C4 C6 B3P sing 122 n n C4 C7 B3P sing 123 n n C5 O4 B3P sing 124 n n C5 H51 B3P sing 125 n n C5 H52 B3P sing 126 n n C6 O5 B3P sing 127 n n C6 H61 B3P sing 128 n n C6 H62 B3P sing 129 n n C7 O6 B3P sing 130 n n C7 H71 B3P sing 131 n n C7 H72 B3P sing 132 n n N2 C8 B3P sing 133 n n N2 HN2 B3P sing 134 n n C8 C9 B3P sing 135 n n C8 C10 B3P sing 136 n n C8 C11 B3P sing 137 n n C9 O1 B3P sing 138 n n C9 H91 B3P sing 139 n n C9 H92 B3P sing 140 n n C10 O2 B3P sing 141 n n C10 H101 B3P sing 142 n n C10 H102 B3P sing 143 n n C11 O3 B3P sing 144 n n C11 H111 B3P sing 145 n n C11 H112 B3P sing 146 n n O1 HO1 B3P sing 147 n n O2 HO2 B3P sing 148 n n O3 HO3 B3P sing 149 n n O4 HO4 B3P sing 150 n n O5 HO5 B3P sing 151 n n O6 HO6 B3P sing 152 n n # _atom_sites.entry_id 4WTK _atom_sites.fract_transf_matrix[1][1] 0.007131 _atom_sites.fract_transf_matrix[1][2] 0.004117 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 601 1 MN MN . E 4 MN A 1 602 2 MN MN . F 4 MN A 1 603 3 MN MN . G 5 CL A 1 604 4 CL CL . H 6 CDP A 1 605 1 CDP CDP . I 7 PG6 A 1 606 1 PG6 PG6 . J 8 B3P A 1 607 2 B3P B3P . K 9 EDO A 1 608 1 EDO EDO . L 10 HOH T 1 101 99 HOH HOH . M 10 HOH P 1 101 69 HOH HOH . M 10 HOH P 2 102 98 HOH HOH . M 10 HOH P 3 103 100 HOH HOH . M 10 HOH P 4 104 101 HOH HOH . N 10 HOH A 1 701 28 HOH HOH . N 10 HOH A 2 702 16 HOH HOH . N 10 HOH A 3 703 82 HOH HOH . N 10 HOH A 4 704 8 HOH HOH . N 10 HOH A 5 705 6 HOH HOH . N 10 HOH A 6 706 37 HOH HOH . N 10 HOH A 7 707 78 HOH HOH . N 10 HOH A 8 708 39 HOH HOH . N 10 HOH A 9 709 27 HOH HOH . N 10 HOH A 10 710 54 HOH HOH . N 10 HOH A 11 711 43 HOH HOH . N 10 HOH A 12 712 109 HOH HOH . N 10 HOH A 13 713 88 HOH HOH . N 10 HOH A 14 714 1 HOH HOH . N 10 HOH A 15 715 80 HOH HOH . N 10 HOH A 16 716 40 HOH HOH . N 10 HOH A 17 717 102 HOH HOH . N 10 HOH A 18 718 60 HOH HOH . N 10 HOH A 19 719 38 HOH HOH . N 10 HOH A 20 720 96 HOH HOH . N 10 HOH A 21 721 18 HOH HOH . N 10 HOH A 22 722 29 HOH HOH . N 10 HOH A 23 723 95 HOH HOH . N 10 HOH A 24 724 114 HOH HOH . N 10 HOH A 25 725 41 HOH HOH . N 10 HOH A 26 726 2 HOH HOH . N 10 HOH A 27 727 3 HOH HOH . N 10 HOH A 28 728 4 HOH HOH . N 10 HOH A 29 729 5 HOH HOH . N 10 HOH A 30 730 7 HOH HOH . N 10 HOH A 31 731 9 HOH HOH . N 10 HOH A 32 732 10 HOH HOH . N 10 HOH A 33 733 11 HOH HOH . N 10 HOH A 34 734 12 HOH HOH . N 10 HOH A 35 735 13 HOH HOH . N 10 HOH A 36 736 14 HOH HOH . N 10 HOH A 37 737 15 HOH HOH . N 10 HOH A 38 738 17 HOH HOH . N 10 HOH A 39 739 19 HOH HOH . N 10 HOH A 40 740 20 HOH HOH . N 10 HOH A 41 741 21 HOH HOH . N 10 HOH A 42 742 22 HOH HOH . N 10 HOH A 43 743 23 HOH HOH . N 10 HOH A 44 744 24 HOH HOH . N 10 HOH A 45 745 25 HOH HOH . N 10 HOH A 46 746 26 HOH HOH . N 10 HOH A 47 747 30 HOH HOH . N 10 HOH A 48 748 31 HOH HOH . N 10 HOH A 49 749 32 HOH HOH . N 10 HOH A 50 750 33 HOH HOH . N 10 HOH A 51 751 34 HOH HOH . N 10 HOH A 52 752 35 HOH HOH . N 10 HOH A 53 753 36 HOH HOH . N 10 HOH A 54 754 42 HOH HOH . N 10 HOH A 55 755 44 HOH HOH . N 10 HOH A 56 756 45 HOH HOH . N 10 HOH A 57 757 46 HOH HOH . N 10 HOH A 58 758 47 HOH HOH . N 10 HOH A 59 759 48 HOH HOH . N 10 HOH A 60 760 49 HOH HOH . N 10 HOH A 61 761 50 HOH HOH . N 10 HOH A 62 762 51 HOH HOH . N 10 HOH A 63 763 52 HOH HOH . N 10 HOH A 64 764 53 HOH HOH . N 10 HOH A 65 765 55 HOH HOH . N 10 HOH A 66 766 56 HOH HOH . N 10 HOH A 67 767 57 HOH HOH . N 10 HOH A 68 768 58 HOH HOH . N 10 HOH A 69 769 59 HOH HOH . N 10 HOH A 70 770 61 HOH HOH . N 10 HOH A 71 771 62 HOH HOH . N 10 HOH A 72 772 63 HOH HOH . N 10 HOH A 73 773 64 HOH HOH . N 10 HOH A 74 774 65 HOH HOH . N 10 HOH A 75 775 66 HOH HOH . N 10 HOH A 76 776 67 HOH HOH . N 10 HOH A 77 777 68 HOH HOH . N 10 HOH A 78 778 70 HOH HOH . N 10 HOH A 79 779 71 HOH HOH . N 10 HOH A 80 780 72 HOH HOH . N 10 HOH A 81 781 73 HOH HOH . N 10 HOH A 82 782 74 HOH HOH . N 10 HOH A 83 783 75 HOH HOH . N 10 HOH A 84 784 76 HOH HOH . N 10 HOH A 85 785 77 HOH HOH . N 10 HOH A 86 786 79 HOH HOH . N 10 HOH A 87 787 81 HOH HOH . N 10 HOH A 88 788 83 HOH HOH . N 10 HOH A 89 789 84 HOH HOH . N 10 HOH A 90 790 85 HOH HOH . N 10 HOH A 91 791 86 HOH HOH . N 10 HOH A 92 792 87 HOH HOH . N 10 HOH A 93 793 89 HOH HOH . N 10 HOH A 94 794 90 HOH HOH . N 10 HOH A 95 795 91 HOH HOH . N 10 HOH A 96 796 92 HOH HOH . N 10 HOH A 97 797 93 HOH HOH . N 10 HOH A 98 798 94 HOH HOH . N 10 HOH A 99 799 97 HOH HOH . N 10 HOH A 100 800 103 HOH HOH . N 10 HOH A 101 801 104 HOH HOH . N 10 HOH A 102 802 105 HOH HOH . N 10 HOH A 103 803 106 HOH HOH . N 10 HOH A 104 804 107 HOH HOH . N 10 HOH A 105 805 108 HOH HOH . N 10 HOH A 106 806 110 HOH HOH . N 10 HOH A 107 807 111 HOH HOH . N 10 HOH A 108 808 112 HOH HOH . N 10 HOH A 109 809 113 HOH HOH . N 10 HOH A 110 810 115 HOH HOH . N 10 HOH A 111 811 116 HOH HOH . N 10 HOH A 112 812 117 HOH HOH . N 10 HOH A 113 813 118 HOH HOH . N 10 HOH A 114 814 119 HOH HOH . N 10 HOH A 115 815 120 HOH HOH . N 10 HOH A 116 816 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . J 8 64.677 -67.021 -8.268 1 87.48 ? C1 B3P 607 A 1 HETATM 2 C C2 B3P . . . J 8 65.226 -68.005 -9.297 1 91.43 ? C2 B3P 607 A 1 HETATM 3 C C3 B3P . . . J 8 65.537 -65.764 -8.206 1 78.98 ? C3 B3P 607 A 1 HETATM 4 N N1 B3P . . . J 8 64.767 -64.525 -8.098 1 75.09 ? N1 B3P 607 A 1 HETATM 5 C C4 B3P . . . J 8 65.288 -63.347 -7.389 1 66.68 ? C4 B3P 607 A 1 HETATM 6 C C5 B3P . . . J 8 64.513 -62.075 -7.765 1 61.32 ? C5 B3P 607 A 1 HETATM 7 C C6 B3P . . . J 8 65.219 -63.582 -5.866 1 64.84 ? C6 B3P 607 A 1 HETATM 8 C C7 B3P . . . J 8 66.755 -63.136 -7.796 1 75.14 ? C7 B3P 607 A 1 HETATM 9 N N2 B3P . . . J 8 64.409 -69.207 -9.38 1 102.39 ? N2 B3P 607 A 1 HETATM 10 C C8 B3P . . . J 8 64.714 -70.343 -10.245 1 109.69 ? C8 B3P 607 A 1 HETATM 11 C C9 B3P . . . J 8 65.594 -69.873 -11.404 1 112.51 ? C9 B3P 607 A 1 HETATM 12 C C10 B3P . . . J 8 63.402 -70.942 -10.763 1 111.46 ? C10 B3P 607 A 1 HETATM 13 C C11 B3P . . . J 8 65.435 -71.42 -9.433 1 103.69 ? C11 B3P 607 A 1 HETATM 14 O O1 B3P . . . J 8 65.777 -70.922 -12.356 1 123.32 ? O1 B3P 607 A 1 HETATM 15 O O2 B3P . . . J 8 62.5 -71.232 -9.679 1 110.11 ? O2 B3P 607 A 1 HETATM 16 O O3 B3P . . . J 8 66.042 -70.839 -8.277 1 102.63 ? O3 B3P 607 A 1 HETATM 17 O O4 B3P . . . J 8 64.854 -60.91 -6.98 1 53.33 ? O4 B3P 607 A 1 HETATM 18 O O5 B3P . . . J 8 64.005 -64.222 -5.408 1 68.06 ? O5 B3P 607 A 1 HETATM 19 O O6 B3P . . . J 8 66.995 -62.964 -9.208 1 75.76 ? O6 B3P 607 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #