data_4WTZ # _model_server_result.job_id DsXeZezoAtg_7pB-dWAIMA _model_server_result.datetime_utc '2024-12-21 14:21:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wtz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":201}' # _entry.id 4WTZ # _exptl.entry_id 4WTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WTZ _cell.length_a 109.146 _cell.length_b 113.582 _cell.length_c 123.151 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,J,M,N,P,Y 1 1 B,I,O,Q,X 2 1 C,G,R,V 3 1 D,H,S,W 4 1 E,L,T,AA 5 1 F,K,U,Z 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 105 1_555 M NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 M NI NI . A NI 201 1_555 D NE2 HIS 106 D HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 M NI NI . A NI 201 1_555 S O HOH . D HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc4 M NI NI . A NI 201 1_555 E NE2 HIS 106 E HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 B NE2 HIS 106 B HIS 105 1_555 O NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 O NI NI . B NI 201 1_555 Q O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 O NI NI . B NI 201 1_555 C NE2 HIS 106 C HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 O NI NI . B NI 201 4_554 F NE2 HIS 106 F HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WTZ _atom_sites.fract_transf_matrix[1][1] 0.009162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 NI A 1 201 201 NI NI . N 3 NI A 1 202 202 NI NI . O 3 NI B 1 201 201 NI NI . P 4 HOH A 1 301 301 HOH HOH . P 4 HOH A 2 302 302 HOH HOH . P 4 HOH A 3 303 303 HOH HOH . P 4 HOH A 4 304 305 HOH HOH . P 4 HOH A 5 305 306 HOH HOH . P 4 HOH A 6 306 307 HOH HOH . P 4 HOH A 7 307 308 HOH HOH . P 4 HOH A 8 308 309 HOH HOH . P 4 HOH A 9 309 310 HOH HOH . P 4 HOH A 10 310 311 HOH HOH . P 4 HOH A 11 311 312 HOH HOH . P 4 HOH A 12 312 313 HOH HOH . P 4 HOH A 13 313 314 HOH HOH . P 4 HOH A 14 314 315 HOH HOH . P 4 HOH A 15 315 316 HOH HOH . P 4 HOH A 16 316 317 HOH HOH . P 4 HOH A 17 317 318 HOH HOH . P 4 HOH A 18 318 319 HOH HOH . P 4 HOH A 19 319 320 HOH HOH . P 4 HOH A 20 320 321 HOH HOH . P 4 HOH A 21 321 322 HOH HOH . P 4 HOH A 22 322 323 HOH HOH . P 4 HOH A 23 323 324 HOH HOH . P 4 HOH A 24 324 325 HOH HOH . P 4 HOH A 25 325 326 HOH HOH . P 4 HOH A 26 326 327 HOH HOH . P 4 HOH A 27 327 328 HOH HOH . P 4 HOH A 28 328 329 HOH HOH . P 4 HOH A 29 329 330 HOH HOH . P 4 HOH A 30 330 331 HOH HOH . P 4 HOH A 31 331 332 HOH HOH . Q 4 HOH B 1 301 303 HOH HOH . Q 4 HOH B 2 302 304 HOH HOH . Q 4 HOH B 3 303 305 HOH HOH . Q 4 HOH B 4 304 204 HOH HOH . Q 4 HOH B 5 305 307 HOH HOH . Q 4 HOH B 6 306 309 HOH HOH . Q 4 HOH B 7 307 310 HOH HOH . Q 4 HOH B 8 308 311 HOH HOH . Q 4 HOH B 9 309 312 HOH HOH . Q 4 HOH B 10 310 313 HOH HOH . Q 4 HOH B 11 311 314 HOH HOH . Q 4 HOH B 12 312 315 HOH HOH . Q 4 HOH B 13 313 316 HOH HOH . Q 4 HOH B 14 314 317 HOH HOH . Q 4 HOH B 15 315 319 HOH HOH . Q 4 HOH B 16 316 320 HOH HOH . Q 4 HOH B 17 317 321 HOH HOH . Q 4 HOH B 18 318 322 HOH HOH . Q 4 HOH B 19 319 323 HOH HOH . Q 4 HOH B 20 320 324 HOH HOH . Q 4 HOH B 21 321 325 HOH HOH . Q 4 HOH B 22 322 326 HOH HOH . R 4 HOH C 1 201 201 HOH HOH . R 4 HOH C 2 202 216 HOH HOH . R 4 HOH C 3 203 214 HOH HOH . R 4 HOH C 4 204 202 HOH HOH . R 4 HOH C 5 205 203 HOH HOH . R 4 HOH C 6 206 204 HOH HOH . R 4 HOH C 7 207 205 HOH HOH . R 4 HOH C 8 208 206 HOH HOH . R 4 HOH C 9 209 207 HOH HOH . R 4 HOH C 10 210 209 HOH HOH . R 4 HOH C 11 211 210 HOH HOH . R 4 HOH C 12 212 211 HOH HOH . R 4 HOH C 13 213 213 HOH HOH . R 4 HOH C 14 214 215 HOH HOH . R 4 HOH C 15 215 217 HOH HOH . R 4 HOH C 16 216 218 HOH HOH . S 4 HOH D 1 201 203 HOH HOH . S 4 HOH D 2 202 202 HOH HOH . S 4 HOH D 3 203 201 HOH HOH . S 4 HOH D 4 204 204 HOH HOH . S 4 HOH D 5 205 205 HOH HOH . S 4 HOH D 6 206 206 HOH HOH . S 4 HOH D 7 207 207 HOH HOH . S 4 HOH D 8 208 208 HOH HOH . S 4 HOH D 9 209 209 HOH HOH . S 4 HOH D 10 210 212 HOH HOH . S 4 HOH D 11 211 214 HOH HOH . S 4 HOH D 12 212 215 HOH HOH . S 4 HOH D 13 213 216 HOH HOH . S 4 HOH D 14 214 217 HOH HOH . S 4 HOH D 15 215 219 HOH HOH . S 4 HOH D 16 216 220 HOH HOH . S 4 HOH D 17 217 221 HOH HOH . S 4 HOH D 18 218 222 HOH HOH . S 4 HOH D 19 219 223 HOH HOH . S 4 HOH D 20 220 224 HOH HOH . S 4 HOH D 21 221 225 HOH HOH . S 4 HOH D 22 222 227 HOH HOH . S 4 HOH D 23 223 228 HOH HOH . S 4 HOH D 24 224 229 HOH HOH . S 4 HOH D 25 225 230 HOH HOH . S 4 HOH D 26 226 231 HOH HOH . S 4 HOH D 27 227 232 HOH HOH . T 4 HOH E 1 201 203 HOH HOH . T 4 HOH E 2 202 202 HOH HOH . T 4 HOH E 3 203 207 HOH HOH . T 4 HOH E 4 204 201 HOH HOH . T 4 HOH E 5 205 205 HOH HOH . T 4 HOH E 6 206 206 HOH HOH . T 4 HOH E 7 207 208 HOH HOH . T 4 HOH E 8 208 210 HOH HOH . T 4 HOH E 9 209 211 HOH HOH . T 4 HOH E 10 210 212 HOH HOH . T 4 HOH E 11 211 213 HOH HOH . T 4 HOH E 12 212 214 HOH HOH . T 4 HOH E 13 213 215 HOH HOH . T 4 HOH E 14 214 216 HOH HOH . T 4 HOH E 15 215 217 HOH HOH . U 4 HOH F 1 201 201 HOH HOH . U 4 HOH F 2 202 214 HOH HOH . U 4 HOH F 3 203 210 HOH HOH . U 4 HOH F 4 204 202 HOH HOH . U 4 HOH F 5 205 205 HOH HOH . U 4 HOH F 6 206 207 HOH HOH . U 4 HOH F 7 207 208 HOH HOH . U 4 HOH F 8 208 209 HOH HOH . U 4 HOH F 9 209 211 HOH HOH . U 4 HOH F 10 210 212 HOH HOH . U 4 HOH F 11 211 213 HOH HOH . U 4 HOH F 12 212 215 HOH HOH . V 4 HOH G 1 201 202 HOH HOH . V 4 HOH G 2 202 205 HOH HOH . V 4 HOH G 3 203 206 HOH HOH . V 4 HOH G 4 204 208 HOH HOH . V 4 HOH G 5 205 209 HOH HOH . V 4 HOH G 6 206 210 HOH HOH . V 4 HOH G 7 207 211 HOH HOH . V 4 HOH G 8 208 212 HOH HOH . W 4 HOH H 1 201 201 HOH HOH . W 4 HOH H 2 202 202 HOH HOH . W 4 HOH H 3 203 205 HOH HOH . W 4 HOH H 4 204 203 HOH HOH . W 4 HOH H 5 205 204 HOH HOH . W 4 HOH H 6 206 206 HOH HOH . W 4 HOH H 7 207 215 HOH HOH . W 4 HOH H 8 208 218 HOH HOH . W 4 HOH H 9 209 208 HOH HOH . W 4 HOH H 10 210 209 HOH HOH . W 4 HOH H 11 211 210 HOH HOH . W 4 HOH H 12 212 211 HOH HOH . W 4 HOH H 13 213 212 HOH HOH . W 4 HOH H 14 214 213 HOH HOH . W 4 HOH H 15 215 217 HOH HOH . W 4 HOH H 16 216 218 HOH HOH . W 4 HOH H 17 217 220 HOH HOH . W 4 HOH H 18 218 221 HOH HOH . W 4 HOH H 19 219 223 HOH HOH . W 4 HOH H 20 220 224 HOH HOH . W 4 HOH H 21 221 225 HOH HOH . W 4 HOH H 22 222 227 HOH HOH . W 4 HOH H 23 223 228 HOH HOH . W 4 HOH H 24 224 229 HOH HOH . W 4 HOH H 25 225 230 HOH HOH . W 4 HOH H 26 226 204 HOH HOH . X 4 HOH I 1 201 202 HOH HOH . X 4 HOH I 2 202 204 HOH HOH . X 4 HOH I 3 203 205 HOH HOH . X 4 HOH I 4 204 211 HOH HOH . X 4 HOH I 5 205 207 HOH HOH . X 4 HOH I 6 206 206 HOH HOH . X 4 HOH I 7 207 208 HOH HOH . X 4 HOH I 8 208 212 HOH HOH . X 4 HOH I 9 209 216 HOH HOH . X 4 HOH I 10 210 214 HOH HOH . X 4 HOH I 11 211 209 HOH HOH . X 4 HOH I 12 212 210 HOH HOH . X 4 HOH I 13 213 201 HOH HOH . X 4 HOH I 14 214 203 HOH HOH . X 4 HOH I 15 215 213 HOH HOH . X 4 HOH I 16 216 215 HOH HOH . X 4 HOH I 17 217 217 HOH HOH . Y 4 HOH J 1 201 201 HOH HOH . Y 4 HOH J 2 202 203 HOH HOH . Y 4 HOH J 3 203 204 HOH HOH . Y 4 HOH J 4 204 205 HOH HOH . Y 4 HOH J 5 205 206 HOH HOH . Y 4 HOH J 6 206 207 HOH HOH . Y 4 HOH J 7 207 208 HOH HOH . Y 4 HOH J 8 208 209 HOH HOH . Y 4 HOH J 9 209 210 HOH HOH . Y 4 HOH J 10 210 211 HOH HOH . Z 4 HOH K 1 201 201 HOH HOH . Z 4 HOH K 2 202 202 HOH HOH . Z 4 HOH K 3 203 205 HOH HOH . AA 4 HOH L 1 201 226 HOH HOH . AA 4 HOH L 2 202 203 HOH HOH . AA 4 HOH L 3 203 202 HOH HOH . AA 4 HOH L 4 204 204 HOH HOH . AA 4 HOH L 5 205 205 HOH HOH . AA 4 HOH L 6 206 206 HOH HOH . AA 4 HOH L 7 207 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.126 _atom_site.Cartn_y 16.249 _atom_site.Cartn_z -58.111 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #