data_4WTZ
#
_model_server_result.job_id            JCe_KNTma3sZYVRzLRHM2A 
_model_server_result.datetime_utc      '2024-10-10 14:19:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wtz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":202}' 
#
_entry.id    4WTZ 
#
_exptl.entry_id    4WTZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WTZ 
_cell.length_a            109.146 
_cell.length_b            113.582 
_cell.length_c            123.151 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WTZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J,M,N,P,Y 1 1 
B,I,O,Q,X 2 1 
C,G,R,V 3 1 
D,H,S,W 4 1 
E,L,T,AA 5 1 
F,K,U,Z 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 106 A HIS 105 1_555 M NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc2 M NI NI . A NI 201 1_555 D NE2 HIS 106 D HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 M NI NI . A NI 201 1_555 S O HOH . D HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
metalc ? metalc4 M NI NI . A NI 201 1_555 E NE2 HIS 106 E HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc5 B NE2 HIS 106 B HIS 105 1_555 O NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc6 O NI NI . B NI 201 1_555 Q O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc7 O NI NI . B NI 201 1_555 C NE2 HIS 106 C HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc8 O NI NI . B NI 201 4_554 F NE2 HIS 106 F HIS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4WTZ 
_atom_sites.fract_transf_matrix[1][1]    0.009162 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 NI A 1 201 201 NI NI . 
N 3 NI A 1 202 202 NI NI . 
O 3 NI B 1 201 201 NI NI . 
P 4 HOH A 1 301 301 HOH HOH . 
P 4 HOH A 2 302 302 HOH HOH . 
P 4 HOH A 3 303 303 HOH HOH . 
P 4 HOH A 4 304 305 HOH HOH . 
P 4 HOH A 5 305 306 HOH HOH . 
P 4 HOH A 6 306 307 HOH HOH . 
P 4 HOH A 7 307 308 HOH HOH . 
P 4 HOH A 8 308 309 HOH HOH . 
P 4 HOH A 9 309 310 HOH HOH . 
P 4 HOH A 10 310 311 HOH HOH . 
P 4 HOH A 11 311 312 HOH HOH . 
P 4 HOH A 12 312 313 HOH HOH . 
P 4 HOH A 13 313 314 HOH HOH . 
P 4 HOH A 14 314 315 HOH HOH . 
P 4 HOH A 15 315 316 HOH HOH . 
P 4 HOH A 16 316 317 HOH HOH . 
P 4 HOH A 17 317 318 HOH HOH . 
P 4 HOH A 18 318 319 HOH HOH . 
P 4 HOH A 19 319 320 HOH HOH . 
P 4 HOH A 20 320 321 HOH HOH . 
P 4 HOH A 21 321 322 HOH HOH . 
P 4 HOH A 22 322 323 HOH HOH . 
P 4 HOH A 23 323 324 HOH HOH . 
P 4 HOH A 24 324 325 HOH HOH . 
P 4 HOH A 25 325 326 HOH HOH . 
P 4 HOH A 26 326 327 HOH HOH . 
P 4 HOH A 27 327 328 HOH HOH . 
P 4 HOH A 28 328 329 HOH HOH . 
P 4 HOH A 29 329 330 HOH HOH . 
P 4 HOH A 30 330 331 HOH HOH . 
P 4 HOH A 31 331 332 HOH HOH . 
Q 4 HOH B 1 301 303 HOH HOH . 
Q 4 HOH B 2 302 304 HOH HOH . 
Q 4 HOH B 3 303 305 HOH HOH . 
Q 4 HOH B 4 304 204 HOH HOH . 
Q 4 HOH B 5 305 307 HOH HOH . 
Q 4 HOH B 6 306 309 HOH HOH . 
Q 4 HOH B 7 307 310 HOH HOH . 
Q 4 HOH B 8 308 311 HOH HOH . 
Q 4 HOH B 9 309 312 HOH HOH . 
Q 4 HOH B 10 310 313 HOH HOH . 
Q 4 HOH B 11 311 314 HOH HOH . 
Q 4 HOH B 12 312 315 HOH HOH . 
Q 4 HOH B 13 313 316 HOH HOH . 
Q 4 HOH B 14 314 317 HOH HOH . 
Q 4 HOH B 15 315 319 HOH HOH . 
Q 4 HOH B 16 316 320 HOH HOH . 
Q 4 HOH B 17 317 321 HOH HOH . 
Q 4 HOH B 18 318 322 HOH HOH . 
Q 4 HOH B 19 319 323 HOH HOH . 
Q 4 HOH B 20 320 324 HOH HOH . 
Q 4 HOH B 21 321 325 HOH HOH . 
Q 4 HOH B 22 322 326 HOH HOH . 
R 4 HOH C 1 201 201 HOH HOH . 
R 4 HOH C 2 202 216 HOH HOH . 
R 4 HOH C 3 203 214 HOH HOH . 
R 4 HOH C 4 204 202 HOH HOH . 
R 4 HOH C 5 205 203 HOH HOH . 
R 4 HOH C 6 206 204 HOH HOH . 
R 4 HOH C 7 207 205 HOH HOH . 
R 4 HOH C 8 208 206 HOH HOH . 
R 4 HOH C 9 209 207 HOH HOH . 
R 4 HOH C 10 210 209 HOH HOH . 
R 4 HOH C 11 211 210 HOH HOH . 
R 4 HOH C 12 212 211 HOH HOH . 
R 4 HOH C 13 213 213 HOH HOH . 
R 4 HOH C 14 214 215 HOH HOH . 
R 4 HOH C 15 215 217 HOH HOH . 
R 4 HOH C 16 216 218 HOH HOH . 
S 4 HOH D 1 201 203 HOH HOH . 
S 4 HOH D 2 202 202 HOH HOH . 
S 4 HOH D 3 203 201 HOH HOH . 
S 4 HOH D 4 204 204 HOH HOH . 
S 4 HOH D 5 205 205 HOH HOH . 
S 4 HOH D 6 206 206 HOH HOH . 
S 4 HOH D 7 207 207 HOH HOH . 
S 4 HOH D 8 208 208 HOH HOH . 
S 4 HOH D 9 209 209 HOH HOH . 
S 4 HOH D 10 210 212 HOH HOH . 
S 4 HOH D 11 211 214 HOH HOH . 
S 4 HOH D 12 212 215 HOH HOH . 
S 4 HOH D 13 213 216 HOH HOH . 
S 4 HOH D 14 214 217 HOH HOH . 
S 4 HOH D 15 215 219 HOH HOH . 
S 4 HOH D 16 216 220 HOH HOH . 
S 4 HOH D 17 217 221 HOH HOH . 
S 4 HOH D 18 218 222 HOH HOH . 
S 4 HOH D 19 219 223 HOH HOH . 
S 4 HOH D 20 220 224 HOH HOH . 
S 4 HOH D 21 221 225 HOH HOH . 
S 4 HOH D 22 222 227 HOH HOH . 
S 4 HOH D 23 223 228 HOH HOH . 
S 4 HOH D 24 224 229 HOH HOH . 
S 4 HOH D 25 225 230 HOH HOH . 
S 4 HOH D 26 226 231 HOH HOH . 
S 4 HOH D 27 227 232 HOH HOH . 
T 4 HOH E 1 201 203 HOH HOH . 
T 4 HOH E 2 202 202 HOH HOH . 
T 4 HOH E 3 203 207 HOH HOH . 
T 4 HOH E 4 204 201 HOH HOH . 
T 4 HOH E 5 205 205 HOH HOH . 
T 4 HOH E 6 206 206 HOH HOH . 
T 4 HOH E 7 207 208 HOH HOH . 
T 4 HOH E 8 208 210 HOH HOH . 
T 4 HOH E 9 209 211 HOH HOH . 
T 4 HOH E 10 210 212 HOH HOH . 
T 4 HOH E 11 211 213 HOH HOH . 
T 4 HOH E 12 212 214 HOH HOH . 
T 4 HOH E 13 213 215 HOH HOH . 
T 4 HOH E 14 214 216 HOH HOH . 
T 4 HOH E 15 215 217 HOH HOH . 
U 4 HOH F 1 201 201 HOH HOH . 
U 4 HOH F 2 202 214 HOH HOH . 
U 4 HOH F 3 203 210 HOH HOH . 
U 4 HOH F 4 204 202 HOH HOH . 
U 4 HOH F 5 205 205 HOH HOH . 
U 4 HOH F 6 206 207 HOH HOH . 
U 4 HOH F 7 207 208 HOH HOH . 
U 4 HOH F 8 208 209 HOH HOH . 
U 4 HOH F 9 209 211 HOH HOH . 
U 4 HOH F 10 210 212 HOH HOH . 
U 4 HOH F 11 211 213 HOH HOH . 
U 4 HOH F 12 212 215 HOH HOH . 
V 4 HOH G 1 201 202 HOH HOH . 
V 4 HOH G 2 202 205 HOH HOH . 
V 4 HOH G 3 203 206 HOH HOH . 
V 4 HOH G 4 204 208 HOH HOH . 
V 4 HOH G 5 205 209 HOH HOH . 
V 4 HOH G 6 206 210 HOH HOH . 
V 4 HOH G 7 207 211 HOH HOH . 
V 4 HOH G 8 208 212 HOH HOH . 
W 4 HOH H 1 201 201 HOH HOH . 
W 4 HOH H 2 202 202 HOH HOH . 
W 4 HOH H 3 203 205 HOH HOH . 
W 4 HOH H 4 204 203 HOH HOH . 
W 4 HOH H 5 205 204 HOH HOH . 
W 4 HOH H 6 206 206 HOH HOH . 
W 4 HOH H 7 207 215 HOH HOH . 
W 4 HOH H 8 208 218 HOH HOH . 
W 4 HOH H 9 209 208 HOH HOH . 
W 4 HOH H 10 210 209 HOH HOH . 
W 4 HOH H 11 211 210 HOH HOH . 
W 4 HOH H 12 212 211 HOH HOH . 
W 4 HOH H 13 213 212 HOH HOH . 
W 4 HOH H 14 214 213 HOH HOH . 
W 4 HOH H 15 215 217 HOH HOH . 
W 4 HOH H 16 216 218 HOH HOH . 
W 4 HOH H 17 217 220 HOH HOH . 
W 4 HOH H 18 218 221 HOH HOH . 
W 4 HOH H 19 219 223 HOH HOH . 
W 4 HOH H 20 220 224 HOH HOH . 
W 4 HOH H 21 221 225 HOH HOH . 
W 4 HOH H 22 222 227 HOH HOH . 
W 4 HOH H 23 223 228 HOH HOH . 
W 4 HOH H 24 224 229 HOH HOH . 
W 4 HOH H 25 225 230 HOH HOH . 
W 4 HOH H 26 226 204 HOH HOH . 
X 4 HOH I 1 201 202 HOH HOH . 
X 4 HOH I 2 202 204 HOH HOH . 
X 4 HOH I 3 203 205 HOH HOH . 
X 4 HOH I 4 204 211 HOH HOH . 
X 4 HOH I 5 205 207 HOH HOH . 
X 4 HOH I 6 206 206 HOH HOH . 
X 4 HOH I 7 207 208 HOH HOH . 
X 4 HOH I 8 208 212 HOH HOH . 
X 4 HOH I 9 209 216 HOH HOH . 
X 4 HOH I 10 210 214 HOH HOH . 
X 4 HOH I 11 211 209 HOH HOH . 
X 4 HOH I 12 212 210 HOH HOH . 
X 4 HOH I 13 213 201 HOH HOH . 
X 4 HOH I 14 214 203 HOH HOH . 
X 4 HOH I 15 215 213 HOH HOH . 
X 4 HOH I 16 216 215 HOH HOH . 
X 4 HOH I 17 217 217 HOH HOH . 
Y 4 HOH J 1 201 201 HOH HOH . 
Y 4 HOH J 2 202 203 HOH HOH . 
Y 4 HOH J 3 203 204 HOH HOH . 
Y 4 HOH J 4 204 205 HOH HOH . 
Y 4 HOH J 5 205 206 HOH HOH . 
Y 4 HOH J 6 206 207 HOH HOH . 
Y 4 HOH J 7 207 208 HOH HOH . 
Y 4 HOH J 8 208 209 HOH HOH . 
Y 4 HOH J 9 209 210 HOH HOH . 
Y 4 HOH J 10 210 211 HOH HOH . 
Z 4 HOH K 1 201 201 HOH HOH . 
Z 4 HOH K 2 202 202 HOH HOH . 
Z 4 HOH K 3 203 205 HOH HOH . 
AA 4 HOH L 1 201 226 HOH HOH . 
AA 4 HOH L 2 202 203 HOH HOH . 
AA 4 HOH L 3 203 202 HOH HOH . 
AA 4 HOH L 4 204 204 HOH HOH . 
AA 4 HOH L 5 205 205 HOH HOH . 
AA 4 HOH L 6 206 206 HOH HOH . 
AA 4 HOH L 7 207 207 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         N 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               7.252 
_atom_site.Cartn_y               21.322 
_atom_site.Cartn_z               -23.341 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        120.54 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#