data_4WU4 # _model_server_result.job_id NEJlO-noOighllBeB8s7Ww _model_server_result.datetime_utc '2024-11-05 01:22:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4WU4 # _exptl.entry_id 4WU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WU4 _cell.length_a 38.336 _cell.length_b 77.248 _cell.length_c 104.987 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N3 DT 17 G DT -102 1_555 D N1 DA 1 H DA -102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C O4 DT 17 G DT -102 1_555 D N6 DA 1 H DA -102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DT 16 G DT -101 1_555 D N1 DA 2 H DA -101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O4 DT 16 G DT -101 1_555 D N6 DA 2 H DA -101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N3 DT 15 G DT -100 1_555 D N1 DA 3 H DA -100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O4 DT 15 G DT -100 1_555 D N6 DA 3 H DA -100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N1 DA 14 G DA -99 1_555 D N3 DT 4 H DT -99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N6 DA 14 G DA -99 1_555 D O4 DT 4 H DT -99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N1 DG 13 G DG -98 1_555 D N3 DC 5 H DC -98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N2 DG 13 G DG -98 1_555 D O2 DC 5 H DC -98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O6 DG 13 G DG -98 1_555 D N4 DC 5 H DC -98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog12 C N4 DC 12 G DC -97 1_555 D O6 DG 6 H DG -97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DA 11 G DA -96 1_555 D N3 DT 7 H DT -96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N6 DA 11 G DA -96 1_555 D O4 DT 7 H DT -96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DA 10 G DA -95 1_555 D N3 DT 8 H DT -95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N6 DA 10 G DA -95 1_555 D O4 DT 8 H DT -95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 9 G DG -94 1_555 D N3 DC 9 H DC -94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 9 G DG -94 1_555 D O2 DC 9 H DC -94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 9 G DG -94 1_555 D N4 DC 9 H DC -94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 DA 8 G DA -93 1_555 D N3 DT 10 H DT -93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N6 DA 8 G DA -93 1_555 D O4 DT 10 H DT -93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 DA 7 G DA -92 1_555 D N3 DT 11 H DT -92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N6 DA 7 G DA -92 1_555 D O4 DT 11 H DT -92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N3 DT 6 G DT -91 1_555 D N1 DA 12 H DA -91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C O4 DT 6 G DT -91 1_555 D N6 DA 12 H DA -91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DT 5 G DT -90 1_555 D N1 DA 13 H DA -90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O4 DT 5 G DT -90 1_555 D N6 DA 13 H DA -90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N3 DC 4 G DC -89 1_555 D N1 DG 14 H DG -89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N4 DC 4 G DC -89 1_555 D O6 DG 14 H DG -89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O2 DC 4 G DC -89 1_555 D N2 DG 14 H DG -89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N1 DA 3 G DA -88 1_555 D N3 DT 15 H DT -88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N6 DA 3 G DA -88 1_555 D O4 DT 15 H DT -88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N1 DG 2 G DG -87 1_555 D N3 DC 16 H DC -87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N2 DG 2 G DG -87 1_555 D O2 DC 16 H DC -87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O6 DG 2 G DG -87 1_555 D N4 DC 16 H DC -87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N1 DG 1 G DG -86 1_555 D N3 DC 17 H DC -86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N2 DG 1 G DG -86 1_555 D O2 DC 17 H DC -86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O6 DG 1 G DG -86 1_555 D N4 DC 17 H DC -86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 265 n n C1 C2 GOL sing 266 n n C1 H11 GOL sing 267 n n C1 H12 GOL sing 268 n n O1 HO1 GOL sing 269 n n C2 O2 GOL sing 270 n n C2 C3 GOL sing 271 n n C2 H2 GOL sing 272 n n O2 HO2 GOL sing 273 n n C3 O3 GOL sing 274 n n C3 H31 GOL sing 275 n n C3 H32 GOL sing 276 n n O3 HO3 GOL sing 277 n n # _atom_sites.entry_id 4WU4 _atom_sites.fract_transf_matrix[1][1] 0.026085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 301 301 GOL GOL . F 4 GOL H 1 101 101 GOL GOL . G 5 HOH A 1 401 401 HOH HOH . G 5 HOH A 2 402 402 HOH HOH . G 5 HOH A 3 403 403 HOH HOH . G 5 HOH A 4 404 404 HOH HOH . G 5 HOH A 5 405 405 HOH HOH . G 5 HOH A 6 406 406 HOH HOH . G 5 HOH A 7 407 407 HOH HOH . G 5 HOH A 8 408 408 HOH HOH . G 5 HOH A 9 409 409 HOH HOH . G 5 HOH A 10 410 410 HOH HOH . G 5 HOH A 11 411 411 HOH HOH . G 5 HOH A 12 412 412 HOH HOH . G 5 HOH A 13 413 413 HOH HOH . G 5 HOH A 14 414 414 HOH HOH . G 5 HOH A 15 415 415 HOH HOH . G 5 HOH A 16 416 416 HOH HOH . G 5 HOH A 17 417 417 HOH HOH . G 5 HOH A 18 418 418 HOH HOH . G 5 HOH A 19 419 419 HOH HOH . G 5 HOH A 20 420 420 HOH HOH . G 5 HOH A 21 421 421 HOH HOH . G 5 HOH A 22 422 422 HOH HOH . G 5 HOH A 23 423 423 HOH HOH . G 5 HOH A 24 424 424 HOH HOH . G 5 HOH A 25 425 425 HOH HOH . G 5 HOH A 26 426 426 HOH HOH . G 5 HOH A 27 427 427 HOH HOH . G 5 HOH A 28 428 428 HOH HOH . G 5 HOH A 29 429 429 HOH HOH . G 5 HOH A 30 430 430 HOH HOH . G 5 HOH A 31 431 431 HOH HOH . H 5 HOH B 1 301 301 HOH HOH . H 5 HOH B 2 302 302 HOH HOH . H 5 HOH B 3 303 303 HOH HOH . H 5 HOH B 4 304 304 HOH HOH . H 5 HOH B 5 305 305 HOH HOH . H 5 HOH B 6 306 306 HOH HOH . H 5 HOH B 7 307 307 HOH HOH . H 5 HOH B 8 308 308 HOH HOH . H 5 HOH B 9 309 309 HOH HOH . H 5 HOH B 10 310 310 HOH HOH . H 5 HOH B 11 311 311 HOH HOH . H 5 HOH B 12 312 312 HOH HOH . H 5 HOH B 13 313 313 HOH HOH . H 5 HOH B 14 314 314 HOH HOH . H 5 HOH B 15 315 315 HOH HOH . H 5 HOH B 16 316 316 HOH HOH . H 5 HOH B 17 317 317 HOH HOH . H 5 HOH B 18 318 318 HOH HOH . H 5 HOH B 19 319 319 HOH HOH . H 5 HOH B 20 320 320 HOH HOH . H 5 HOH B 21 321 321 HOH HOH . H 5 HOH B 22 322 322 HOH HOH . H 5 HOH B 23 323 323 HOH HOH . H 5 HOH B 24 324 324 HOH HOH . H 5 HOH B 25 325 325 HOH HOH . H 5 HOH B 26 326 326 HOH HOH . H 5 HOH B 27 327 327 HOH HOH . H 5 HOH B 28 328 328 HOH HOH . H 5 HOH B 29 329 329 HOH HOH . H 5 HOH B 30 330 330 HOH HOH . H 5 HOH B 31 331 331 HOH HOH . H 5 HOH B 32 332 332 HOH HOH . H 5 HOH B 33 333 333 HOH HOH . I 5 HOH G 1 101 101 HOH HOH . I 5 HOH G 2 102 102 HOH HOH . I 5 HOH G 3 103 103 HOH HOH . I 5 HOH G 4 104 104 HOH HOH . I 5 HOH G 5 105 105 HOH HOH . I 5 HOH G 6 106 106 HOH HOH . I 5 HOH G 7 107 107 HOH HOH . I 5 HOH G 8 108 108 HOH HOH . I 5 HOH G 9 109 109 HOH HOH . I 5 HOH G 10 110 110 HOH HOH . I 5 HOH G 11 111 111 HOH HOH . I 5 HOH G 12 112 112 HOH HOH . I 5 HOH G 13 113 113 HOH HOH . I 5 HOH G 14 114 114 HOH HOH . I 5 HOH G 15 115 115 HOH HOH . I 5 HOH G 16 116 116 HOH HOH . I 5 HOH G 17 117 117 HOH HOH . I 5 HOH G 18 118 118 HOH HOH . I 5 HOH G 19 119 119 HOH HOH . I 5 HOH G 20 120 120 HOH HOH . I 5 HOH G 21 121 121 HOH HOH . J 5 HOH H 1 201 201 HOH HOH . J 5 HOH H 2 202 202 HOH HOH . J 5 HOH H 3 203 203 HOH HOH . J 5 HOH H 4 204 204 HOH HOH . J 5 HOH H 5 205 205 HOH HOH . J 5 HOH H 6 206 206 HOH HOH . J 5 HOH H 7 207 207 HOH HOH . J 5 HOH H 8 208 208 HOH HOH . J 5 HOH H 9 209 209 HOH HOH . J 5 HOH H 10 210 210 HOH HOH . J 5 HOH H 11 211 211 HOH HOH . J 5 HOH H 12 212 212 HOH HOH . J 5 HOH H 13 213 213 HOH HOH . J 5 HOH H 14 214 214 HOH HOH . J 5 HOH H 15 215 215 HOH HOH . J 5 HOH H 16 216 216 HOH HOH . J 5 HOH H 17 217 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 8.601 4.38 -0.663 1 55.7 ? C1 GOL 101 H 1 HETATM 2 O O1 GOL . . . F 4 8.785 4.537 -2.052 1 49.86 ? O1 GOL 101 H 1 HETATM 3 C C2 GOL . . . F 4 7.207 3.828 -0.393 1 53.32 ? C2 GOL 101 H 1 HETATM 4 O O2 GOL . . . F 4 6.347 4.888 -0.041 1 56.83 ? O2 GOL 101 H 1 HETATM 5 C C3 GOL . . . F 4 7.271 2.827 0.755 1 50.93 ? C3 GOL 101 H 1 HETATM 6 O O3 GOL . . . F 4 8.196 1.81 0.441 1 41.72 ? O3 GOL 101 H 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #