data_4WUH # _model_server_result.job_id eKhkZY7ULN9nIeMSrrv0aA _model_server_result.datetime_utc '2025-02-05 04:09:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wuh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 4WUH # _exptl.entry_id 4WUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WUH _cell.length_a 38.332 _cell.length_b 77.932 _cell.length_c 104.696 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DG 1 G DG 86 1_555 D N3 DC 11 H DC -92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 1 G DG 86 1_555 D O2 DC 11 H DC -92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 1 G DG 86 1_555 D N4 DC 11 H DC -92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DG 2 G DG 87 1_555 D N3 DC 10 H DC -93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N2 DG 2 G DG 87 1_555 D O2 DC 10 H DC -93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O6 DG 2 G DG 87 1_555 D N4 DC 10 H DC -93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N1 DA 3 G DA 88 1_555 D N3 DT 9 H DT -94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N6 DA 3 G DA 88 1_555 D O4 DT 9 H DT -94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DC 4 G DC 89 1_555 D N1 DG 8 H DG -95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 DC 4 G DC 89 1_555 D O6 DG 8 H DG -95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 DC 4 G DC 89 1_555 D N2 DG 8 H DG -95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N3 DT 5 G DT 90 1_555 D N1 DA 7 H DA -96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O4 DT 5 G DT 90 1_555 D N6 DA 7 H DA -96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog14 C N3 DT 6 G DT 91 1_555 D N1 DA 6 H DA -97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DA 8 G DA 93 1_555 D N3 DT 4 H DT -99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N6 DA 8 G DA 93 1_555 D O4 DT 4 H DT -99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 9 G DG 94 1_555 D N3 DC 3 H DC -100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 9 G DG 94 1_555 D O2 DC 3 H DC -100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 9 G DG 94 1_555 D N4 DC 3 H DC -100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 DA 10 G DA 95 1_555 D N3 DT 2 H DT -101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N6 DA 10 G DA 95 1_555 D O4 DT 2 H DT -101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 DA 11 G DA 96 1_555 D N3 DT 1 H DT -102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N6 DA 11 G DA 96 1_555 D O4 DT 1 H DT -102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog24 C N4 DC 12 G DC 97 1_555 E O6 DG 6 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DG 13 G DG 98 1_555 E N3 DC 5 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N2 DG 13 G DG 98 1_555 E O2 DC 5 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O6 DG 13 G DG 98 1_555 E N4 DC 5 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N1 DA 14 G DA 99 1_555 E N3 DT 4 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N6 DA 14 G DA 99 1_555 E O4 DT 4 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 DT 15 G DT 100 1_555 E N1 DA 3 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O4 DT 15 G DT 100 1_555 E N6 DA 3 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N3 DT 16 G DT 101 1_555 E N1 DA 2 C DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O4 DT 16 G DT 101 1_555 E N6 DA 2 C DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N3 DT 17 G DT 102 1_555 E N1 DA 1 C DA 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O4 DT 17 G DT 102 1_555 E N6 DA 1 C DA 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 265 n n C1 C2 GOL sing 266 n n C1 H11 GOL sing 267 n n C1 H12 GOL sing 268 n n O1 HO1 GOL sing 269 n n C2 O2 GOL sing 270 n n C2 C3 GOL sing 271 n n C2 H2 GOL sing 272 n n O2 HO2 GOL sing 273 n n C3 O3 GOL sing 274 n n C3 H31 GOL sing 275 n n C3 H32 GOL sing 276 n n O3 HO3 GOL sing 277 n n # _atom_sites.entry_id 4WUH _atom_sites.fract_transf_matrix[1][1] 0.026088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 GOL B 1 301 2 GOL GOL . G 5 GOL G 1 200 3 GOL GOL . H 6 HOH A 1 300 39 HOH HOH . H 6 HOH A 2 301 10 HOH HOH . H 6 HOH A 3 302 4 HOH HOH . H 6 HOH A 4 303 42 HOH HOH . H 6 HOH A 5 304 45 HOH HOH . H 6 HOH A 6 305 73 HOH HOH . H 6 HOH A 7 306 14 HOH HOH . H 6 HOH A 8 307 75 HOH HOH . H 6 HOH A 9 308 110 HOH HOH . H 6 HOH A 10 309 78 HOH HOH . H 6 HOH A 11 310 5 HOH HOH . H 6 HOH A 12 311 6 HOH HOH . H 6 HOH A 13 312 9 HOH HOH . H 6 HOH A 14 313 11 HOH HOH . H 6 HOH A 15 314 15 HOH HOH . H 6 HOH A 16 315 19 HOH HOH . H 6 HOH A 17 316 22 HOH HOH . H 6 HOH A 18 317 25 HOH HOH . H 6 HOH A 19 318 27 HOH HOH . H 6 HOH A 20 319 30 HOH HOH . H 6 HOH A 21 320 32 HOH HOH . H 6 HOH A 22 321 37 HOH HOH . H 6 HOH A 23 322 44 HOH HOH . H 6 HOH A 24 323 50 HOH HOH . H 6 HOH A 25 324 51 HOH HOH . H 6 HOH A 26 325 53 HOH HOH . H 6 HOH A 27 326 56 HOH HOH . H 6 HOH A 28 327 58 HOH HOH . H 6 HOH A 29 328 61 HOH HOH . H 6 HOH A 30 329 63 HOH HOH . H 6 HOH A 31 330 66 HOH HOH . H 6 HOH A 32 331 72 HOH HOH . H 6 HOH A 33 332 74 HOH HOH . H 6 HOH A 34 333 97 HOH HOH . H 6 HOH A 35 334 100 HOH HOH . H 6 HOH A 36 335 101 HOH HOH . H 6 HOH A 37 336 103 HOH HOH . H 6 HOH A 38 337 104 HOH HOH . H 6 HOH A 39 338 106 HOH HOH . H 6 HOH A 40 339 107 HOH HOH . H 6 HOH A 41 340 115 HOH HOH . H 6 HOH A 42 341 116 HOH HOH . H 6 HOH A 43 342 118 HOH HOH . I 6 HOH B 1 401 88 HOH HOH . I 6 HOH B 2 402 91 HOH HOH . I 6 HOH B 3 403 28 HOH HOH . I 6 HOH B 4 404 77 HOH HOH . I 6 HOH B 5 405 34 HOH HOH . I 6 HOH B 6 406 85 HOH HOH . I 6 HOH B 7 407 105 HOH HOH . I 6 HOH B 8 408 7 HOH HOH . I 6 HOH B 9 409 13 HOH HOH . I 6 HOH B 10 410 20 HOH HOH . I 6 HOH B 11 411 21 HOH HOH . I 6 HOH B 12 412 23 HOH HOH . I 6 HOH B 13 413 24 HOH HOH . I 6 HOH B 14 414 29 HOH HOH . I 6 HOH B 15 415 31 HOH HOH . I 6 HOH B 16 416 33 HOH HOH . I 6 HOH B 17 417 35 HOH HOH . I 6 HOH B 18 418 36 HOH HOH . I 6 HOH B 19 419 38 HOH HOH . I 6 HOH B 20 420 40 HOH HOH . I 6 HOH B 21 421 41 HOH HOH . I 6 HOH B 22 422 43 HOH HOH . I 6 HOH B 23 423 46 HOH HOH . I 6 HOH B 24 424 54 HOH HOH . I 6 HOH B 25 425 55 HOH HOH . I 6 HOH B 26 426 57 HOH HOH . I 6 HOH B 27 427 60 HOH HOH . I 6 HOH B 28 428 62 HOH HOH . I 6 HOH B 29 429 64 HOH HOH . I 6 HOH B 30 430 67 HOH HOH . I 6 HOH B 31 431 68 HOH HOH . I 6 HOH B 32 432 69 HOH HOH . I 6 HOH B 33 433 76 HOH HOH . I 6 HOH B 34 434 80 HOH HOH . I 6 HOH B 35 435 81 HOH HOH . I 6 HOH B 36 436 83 HOH HOH . I 6 HOH B 37 437 84 HOH HOH . I 6 HOH B 38 438 86 HOH HOH . I 6 HOH B 39 439 90 HOH HOH . I 6 HOH B 40 440 94 HOH HOH . I 6 HOH B 41 441 95 HOH HOH . I 6 HOH B 42 442 96 HOH HOH . I 6 HOH B 43 443 98 HOH HOH . I 6 HOH B 44 444 108 HOH HOH . I 6 HOH B 45 445 119 HOH HOH . I 6 HOH B 46 446 120 HOH HOH . J 6 HOH G 1 300 59 HOH HOH . J 6 HOH G 2 301 112 HOH HOH . J 6 HOH G 3 302 26 HOH HOH . J 6 HOH G 4 303 113 HOH HOH . J 6 HOH G 5 304 3 HOH HOH . J 6 HOH G 6 305 16 HOH HOH . J 6 HOH G 7 306 17 HOH HOH . J 6 HOH G 8 307 18 HOH HOH . J 6 HOH G 9 308 47 HOH HOH . J 6 HOH G 10 309 70 HOH HOH . J 6 HOH G 11 310 71 HOH HOH . J 6 HOH G 12 311 79 HOH HOH . J 6 HOH G 13 312 87 HOH HOH . J 6 HOH G 14 313 89 HOH HOH . J 6 HOH G 15 314 93 HOH HOH . J 6 HOH G 16 315 102 HOH HOH . J 6 HOH G 17 316 109 HOH HOH . J 6 HOH G 18 317 111 HOH HOH . J 6 HOH G 19 318 117 HOH HOH . K 6 HOH H 1 101 1 HOH HOH . K 6 HOH H 2 102 8 HOH HOH . K 6 HOH H 3 103 12 HOH HOH . K 6 HOH H 4 104 48 HOH HOH . K 6 HOH H 5 105 52 HOH HOH . K 6 HOH H 6 106 82 HOH HOH . K 6 HOH H 7 107 92 HOH HOH . K 6 HOH H 8 108 99 HOH HOH . K 6 HOH H 9 109 114 HOH HOH . L 6 HOH C 1 101 65 HOH HOH . L 6 HOH C 2 102 2 HOH HOH . L 6 HOH C 3 103 49 HOH HOH . L 6 HOH C 4 104 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -11.089 -1.942 0.673 1 41.87 ? C1 GOL 200 G 1 HETATM 2 O O1 GOL . . . G 5 -10.742 -1.255 -0.508 1 45.81 ? O1 GOL 200 G 1 HETATM 3 C C2 GOL . . . G 5 -12.128 -3.017 0.374 1 40.83 ? C2 GOL 200 G 1 HETATM 4 O O2 GOL . . . G 5 -11.871 -3.568 -0.895 1 47.39 ? O2 GOL 200 G 1 HETATM 5 C C3 GOL . . . G 5 -12.026 -4.115 1.426 1 43.09 ? C3 GOL 200 G 1 HETATM 6 O O3 GOL . . . G 5 -10.672 -4.321 1.768 1 33.09 ? O3 GOL 200 G 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #