data_4WUX # _model_server_result.job_id xx8Yv1-vXNBt5QcICfnzYA _model_server_result.datetime_utc '2024-11-08 17:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4WUX # _exptl.entry_id 4WUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WUX _cell.length_a 96.944 _cell.length_b 96.944 _cell.length_c 44.994 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 96.944 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.472 83.955967 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C THR 21 A THR 101 1_555 A N MHO 22 A MHO 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MHO 22 A MHO 102 1_555 A N GLY 23 A GLY 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C SER 30 A SER 110 1_555 A N MHO 31 A MHO 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MHO 31 A MHO 111 1_555 A N LEU 32 A LEU 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLU 53 A GLU 133 1_555 A N MHO 54 A MHO 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MHO 54 A MHO 134 1_555 A N CYS 55 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD2 ASP 91 A ASP 171 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc2 A OE1 GLU 115 A GLU 195 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A O ARG 117 A ARG 197 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc4 A OE1 GLN 119 A GLN 199 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc5 A OE1 GLU 122 A GLU 202 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 A OD1 ASN 134 A ASN 214 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 A O ASP 135 A ASP 215 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc8 A OD1 ASP 135 A ASP 215 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 A OD2 ASP 135 A ASP 215 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc10 B O3 MAN . A MAN 301 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc11 B O4 MAN . A MAN 301 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4WUX _atom_sites.fract_transf_matrix[1][1] 0.010315 _atom_sites.fract_transf_matrix[1][2] 0.005956 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAN A 1 301 500 MAN MAN . C 2 MAN A 1 302 501 MAN MAN . D 2 MAN A 1 303 502 MAN MAN . E 3 CA A 1 304 300 CA CA . F 3 CA A 1 305 301 CA CA . G 4 HOH A 1 401 27 HOH HOH . G 4 HOH A 2 402 90 HOH HOH . G 4 HOH A 3 403 101 HOH HOH . G 4 HOH A 4 404 39 HOH HOH . G 4 HOH A 5 405 28 HOH HOH . G 4 HOH A 6 406 4 HOH HOH . G 4 HOH A 7 407 35 HOH HOH . G 4 HOH A 8 408 80 HOH HOH . G 4 HOH A 9 409 16 HOH HOH . G 4 HOH A 10 410 46 HOH HOH . G 4 HOH A 11 411 14 HOH HOH . G 4 HOH A 12 412 100 HOH HOH . G 4 HOH A 13 413 94 HOH HOH . G 4 HOH A 14 414 7 HOH HOH . G 4 HOH A 15 415 22 HOH HOH . G 4 HOH A 16 416 5 HOH HOH . G 4 HOH A 17 417 12 HOH HOH . G 4 HOH A 18 418 73 HOH HOH . G 4 HOH A 19 419 64 HOH HOH . G 4 HOH A 20 420 92 HOH HOH . G 4 HOH A 21 421 17 HOH HOH . G 4 HOH A 22 422 13 HOH HOH . G 4 HOH A 23 423 19 HOH HOH . G 4 HOH A 24 424 43 HOH HOH . G 4 HOH A 25 425 23 HOH HOH . G 4 HOH A 26 426 24 HOH HOH . G 4 HOH A 27 427 42 HOH HOH . G 4 HOH A 28 428 21 HOH HOH . G 4 HOH A 29 429 95 HOH HOH . G 4 HOH A 30 430 105 HOH HOH . G 4 HOH A 31 431 83 HOH HOH . G 4 HOH A 32 432 89 HOH HOH . G 4 HOH A 33 433 87 HOH HOH . G 4 HOH A 34 434 67 HOH HOH . G 4 HOH A 35 435 61 HOH HOH . G 4 HOH A 36 436 93 HOH HOH . G 4 HOH A 37 437 1 HOH HOH . G 4 HOH A 38 438 2 HOH HOH . G 4 HOH A 39 439 3 HOH HOH . G 4 HOH A 40 440 6 HOH HOH . G 4 HOH A 41 441 8 HOH HOH . G 4 HOH A 42 442 9 HOH HOH . G 4 HOH A 43 443 10 HOH HOH . G 4 HOH A 44 444 11 HOH HOH . G 4 HOH A 45 445 15 HOH HOH . G 4 HOH A 46 446 18 HOH HOH . G 4 HOH A 47 447 20 HOH HOH . G 4 HOH A 48 448 25 HOH HOH . G 4 HOH A 49 449 26 HOH HOH . G 4 HOH A 50 450 29 HOH HOH . G 4 HOH A 51 451 30 HOH HOH . G 4 HOH A 52 452 31 HOH HOH . G 4 HOH A 53 453 32 HOH HOH . G 4 HOH A 54 454 33 HOH HOH . G 4 HOH A 55 455 34 HOH HOH . G 4 HOH A 56 456 36 HOH HOH . G 4 HOH A 57 457 37 HOH HOH . G 4 HOH A 58 458 38 HOH HOH . G 4 HOH A 59 459 41 HOH HOH . G 4 HOH A 60 460 44 HOH HOH . G 4 HOH A 61 461 45 HOH HOH . G 4 HOH A 62 462 47 HOH HOH . G 4 HOH A 63 463 48 HOH HOH . G 4 HOH A 64 464 49 HOH HOH . G 4 HOH A 65 465 50 HOH HOH . G 4 HOH A 66 466 52 HOH HOH . G 4 HOH A 67 467 53 HOH HOH . G 4 HOH A 68 468 62 HOH HOH . G 4 HOH A 69 469 72 HOH HOH . G 4 HOH A 70 470 77 HOH HOH . G 4 HOH A 71 471 78 HOH HOH . G 4 HOH A 72 472 79 HOH HOH . G 4 HOH A 73 473 96 HOH HOH . G 4 HOH A 74 474 98 HOH HOH . G 4 HOH A 75 475 99 HOH HOH . G 4 HOH A 76 476 102 HOH HOH . G 4 HOH A 77 477 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 2 81.264 22.392 40.262 1 79.82 ? C1 MAN 303 A 1 HETATM 2 C C2 MAN . . . D 2 79.948 22.493 39.425 1 89.26 ? C2 MAN 303 A 1 HETATM 3 C C3 MAN . . . D 2 78.689 22.12 40.213 1 83.15 ? C3 MAN 303 A 1 HETATM 4 C C4 MAN . . . D 2 79.025 21.211 41.395 1 83.23 ? C4 MAN 303 A 1 HETATM 5 C C5 MAN . . . D 2 79.926 21.99 42.341 1 85.88 ? C5 MAN 303 A 1 HETATM 6 C C6 MAN . . . D 2 80.297 21.2 43.592 1 84.79 ? C6 MAN 303 A 1 HETATM 7 O O1 MAN . . . D 2 82.045 23.479 39.831 1 80.68 ? O1 MAN 303 A 1 HETATM 8 O O2 MAN . . . D 2 79.987 21.593 38.307 1 89.45 ? O2 MAN 303 A 1 HETATM 9 O O3 MAN . . . D 2 77.712 21.519 39.362 1 74.14 ? O3 MAN 303 A 1 HETATM 10 O O4 MAN . . . D 2 77.847 20.847 42.103 1 79.59 ? O4 MAN 303 A 1 HETATM 11 O O5 MAN . . . D 2 81.167 22.374 41.686 1 81.11 ? O5 MAN 303 A 1 HETATM 12 O O6 MAN . . . D 2 80.882 22.096 44.532 1 81.2 ? O6 MAN 303 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #