data_4WV5 # _model_server_result.job_id WkZf8LRMxe5ivM8nqaNqQA _model_server_result.datetime_utc '2024-11-21 23:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4WV5 # _exptl.entry_id 4WV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.77 _cell.angle_gamma 90 _cell.entry_id 4WV5 _cell.length_a 44.738 _cell.length_b 52.597 _cell.length_c 73.246 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4WV5 _atom_sites.fract_transf_matrix[1][1] 0.022352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 1 GOL GOL . D 3 HOH A 1 701 121 HOH HOH . D 3 HOH A 2 702 123 HOH HOH . D 3 HOH A 3 703 26 HOH HOH . D 3 HOH A 4 704 24 HOH HOH . D 3 HOH A 5 705 118 HOH HOH . D 3 HOH A 6 706 64 HOH HOH . D 3 HOH A 7 707 71 HOH HOH . D 3 HOH A 8 708 87 HOH HOH . D 3 HOH A 9 709 89 HOH HOH . D 3 HOH A 10 710 103 HOH HOH . D 3 HOH A 11 711 31 HOH HOH . D 3 HOH A 12 712 67 HOH HOH . D 3 HOH A 13 713 102 HOH HOH . D 3 HOH A 14 714 101 HOH HOH . D 3 HOH A 15 715 105 HOH HOH . D 3 HOH A 16 716 93 HOH HOH . D 3 HOH A 17 717 111 HOH HOH . D 3 HOH A 18 718 1 HOH HOH . D 3 HOH A 19 719 2 HOH HOH . D 3 HOH A 20 720 3 HOH HOH . D 3 HOH A 21 721 5 HOH HOH . D 3 HOH A 22 722 6 HOH HOH . D 3 HOH A 23 723 7 HOH HOH . D 3 HOH A 24 724 12 HOH HOH . D 3 HOH A 25 725 13 HOH HOH . D 3 HOH A 26 726 14 HOH HOH . D 3 HOH A 27 727 19 HOH HOH . D 3 HOH A 28 728 20 HOH HOH . D 3 HOH A 29 729 23 HOH HOH . D 3 HOH A 30 730 25 HOH HOH . D 3 HOH A 31 731 29 HOH HOH . D 3 HOH A 32 732 33 HOH HOH . D 3 HOH A 33 733 36 HOH HOH . D 3 HOH A 34 734 37 HOH HOH . D 3 HOH A 35 735 39 HOH HOH . D 3 HOH A 36 736 41 HOH HOH . D 3 HOH A 37 737 42 HOH HOH . D 3 HOH A 38 738 46 HOH HOH . D 3 HOH A 39 739 47 HOH HOH . D 3 HOH A 40 740 49 HOH HOH . D 3 HOH A 41 741 51 HOH HOH . D 3 HOH A 42 742 53 HOH HOH . D 3 HOH A 43 743 55 HOH HOH . D 3 HOH A 44 744 58 HOH HOH . D 3 HOH A 45 745 60 HOH HOH . D 3 HOH A 46 746 61 HOH HOH . D 3 HOH A 47 747 65 HOH HOH . D 3 HOH A 48 748 68 HOH HOH . D 3 HOH A 49 749 72 HOH HOH . D 3 HOH A 50 750 73 HOH HOH . D 3 HOH A 51 751 75 HOH HOH . D 3 HOH A 52 752 77 HOH HOH . D 3 HOH A 53 753 81 HOH HOH . D 3 HOH A 54 754 84 HOH HOH . D 3 HOH A 55 755 91 HOH HOH . D 3 HOH A 56 756 92 HOH HOH . D 3 HOH A 57 757 95 HOH HOH . D 3 HOH A 58 758 97 HOH HOH . D 3 HOH A 59 759 98 HOH HOH . D 3 HOH A 60 760 99 HOH HOH . D 3 HOH A 61 761 100 HOH HOH . D 3 HOH A 62 762 106 HOH HOH . D 3 HOH A 63 763 107 HOH HOH . D 3 HOH A 64 764 109 HOH HOH . D 3 HOH A 65 765 112 HOH HOH . D 3 HOH A 66 766 113 HOH HOH . D 3 HOH A 67 767 115 HOH HOH . D 3 HOH A 68 768 119 HOH HOH . D 3 HOH A 69 769 120 HOH HOH . D 3 HOH A 70 770 122 HOH HOH . E 3 HOH B 1 601 74 HOH HOH . E 3 HOH B 2 602 17 HOH HOH . E 3 HOH B 3 603 114 HOH HOH . E 3 HOH B 4 604 57 HOH HOH . E 3 HOH B 5 605 62 HOH HOH . E 3 HOH B 6 606 15 HOH HOH . E 3 HOH B 7 607 116 HOH HOH . E 3 HOH B 8 608 9 HOH HOH . E 3 HOH B 9 609 76 HOH HOH . E 3 HOH B 10 610 117 HOH HOH . E 3 HOH B 11 611 4 HOH HOH . E 3 HOH B 12 612 8 HOH HOH . E 3 HOH B 13 613 10 HOH HOH . E 3 HOH B 14 614 11 HOH HOH . E 3 HOH B 15 615 16 HOH HOH . E 3 HOH B 16 616 18 HOH HOH . E 3 HOH B 17 617 21 HOH HOH . E 3 HOH B 18 618 22 HOH HOH . E 3 HOH B 19 619 27 HOH HOH . E 3 HOH B 20 620 28 HOH HOH . E 3 HOH B 21 621 30 HOH HOH . E 3 HOH B 22 622 32 HOH HOH . E 3 HOH B 23 623 34 HOH HOH . E 3 HOH B 24 624 35 HOH HOH . E 3 HOH B 25 625 38 HOH HOH . E 3 HOH B 26 626 40 HOH HOH . E 3 HOH B 27 627 43 HOH HOH . E 3 HOH B 28 628 44 HOH HOH . E 3 HOH B 29 629 45 HOH HOH . E 3 HOH B 30 630 48 HOH HOH . E 3 HOH B 31 631 50 HOH HOH . E 3 HOH B 32 632 52 HOH HOH . E 3 HOH B 33 633 54 HOH HOH . E 3 HOH B 34 634 56 HOH HOH . E 3 HOH B 35 635 59 HOH HOH . E 3 HOH B 36 636 63 HOH HOH . E 3 HOH B 37 637 66 HOH HOH . E 3 HOH B 38 638 69 HOH HOH . E 3 HOH B 39 639 70 HOH HOH . E 3 HOH B 40 640 78 HOH HOH . E 3 HOH B 41 641 79 HOH HOH . E 3 HOH B 42 642 80 HOH HOH . E 3 HOH B 43 643 82 HOH HOH . E 3 HOH B 44 644 83 HOH HOH . E 3 HOH B 45 645 85 HOH HOH . E 3 HOH B 46 646 86 HOH HOH . E 3 HOH B 47 647 88 HOH HOH . E 3 HOH B 48 648 90 HOH HOH . E 3 HOH B 49 649 94 HOH HOH . E 3 HOH B 50 650 96 HOH HOH . E 3 HOH B 51 651 104 HOH HOH . E 3 HOH B 52 652 108 HOH HOH . E 3 HOH B 53 653 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 23.717 -20.75 8.21 1 48.93 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . C 2 23.556 -21.884 7.357 1 46.37 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . C 2 24.382 -21.089 9.526 1 50.31 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . C 2 24.872 -19.885 10.126 1 52.59 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . C 2 23.44 -21.77 10.491 1 48.77 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . C 2 23.343 -23.163 10.215 1 49.22 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #