data_4WVD
#
_model_server_result.job_id            7fs5VWjZOoH6og3WulX9kQ 
_model_server_result.datetime_utc      '2024-11-15 04:06:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":505}' 
#
_entry.id    4WVD 
#
_exptl.entry_id    4WVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              875.093 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WVD 
_cell.length_a            53.008 
_cell.length_b            161.759 
_cell.length_c            169.018 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O 1 1 
C,D,J,K,L,M,N,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 N N N 
#
_chem_comp.formula           'C48 H74 O14' 
_chem_comp.formula_weight    875.093 
_chem_comp.id                IVM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '22,23-DIHYDROAVERMECTIN B1A;IVERMECTIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IVM sing 177 n n 
C1 H1 IVM sing 178 n n 
C1 H1A IVM sing 179 n n 
C1 H1B IVM sing 180 n n 
C6 O1 IVM sing 181 n n 
C5 O1 IVM sing 182 n n 
C3 C2 IVM sing 183 n n 
C2 H2 IVM sing 184 n n 
C2 H2A IVM sing 185 n n 
C19 O2 IVM sing 186 n n 
C20 O2 IVM sing 187 n n 
C5 C3 IVM sing 188 n n 
C3 C4 IVM sing 189 n n 
C3 H3 IVM sing 190 n n 
C22 O3 IVM sing 191 n n 
O3 C23 IVM sing 192 n n 
C4 H4 IVM sing 193 n n 
C4 H4A IVM sing 194 n n 
C4 H4B IVM sing 195 n n 
C24 O4 IVM sing 196 n n 
C25 O4 IVM sing 197 n n 
C9 C5 IVM sing 198 n n 
C5 H5 IVM sing 199 n n 
C27 O5 IVM sing 200 n n 
C28 O5 IVM sing 201 n n 
O14 C6 IVM sing 202 n n 
C7 C6 IVM sing 203 n n 
C6 C11 IVM sing 204 n n 
C29 O6 IVM sing 205 n n 
O6 HO6 IVM sing 206 n n 
C7 C8 IVM sing 207 n n 
C7 H7 IVM sing 208 n n 
C7 H7A IVM sing 209 n n 
C25 O7 IVM sing 210 n n 
O7 C30 IVM sing 211 n n 
C8 C9 IVM sing 212 n n 
C8 H8 IVM sing 213 n n 
C8 H8A IVM sing 214 n n 
O8 C20 IVM sing 215 n n 
O8 C32 IVM sing 216 n n 
C10 C9 IVM sing 217 n n 
C9 H9 IVM sing 218 n n 
C40 O9 IVM sing 219 n n 
O9 C41 IVM sing 220 n n 
C10 H10 IVM sing 221 n n 
C10 H10A IVM sing 222 n n 
C10 H10B IVM sing 223 n n 
O10 C42 IVM sing 224 n n 
O10 HO10 IVM sing 225 n n 
C11 C12 IVM sing 226 n n 
C11 H11 IVM sing 227 n n 
C11 H11A IVM sing 228 n n 
C46 O11 IVM doub 229 n n 
C13 C12 IVM sing 230 n n 
C12 O12 IVM sing 231 n n 
C12 H12 IVM sing 232 n n 
O12 C46 IVM sing 233 n n 
C14 C13 IVM sing 234 n n 
C13 H13 IVM sing 235 n n 
C13 H13A IVM sing 236 n n 
C47 O13 IVM sing 237 n n 
O13 HO13 IVM sing 238 n n 
C15 C14 IVM sing 239 n n 
O14 C14 IVM sing 240 n n 
C14 H14 IVM sing 241 n n 
C15 C16 IVM sing 242 n n 
C15 H15 IVM sing 243 n n 
C15 H15A IVM sing 244 n n 
C17 C16 IVM doub 245 e n 
C16 H16 IVM sing 246 n n 
C18 C17 IVM sing 247 n n 
C17 C19 IVM sing 248 n n 
C18 H18 IVM sing 249 n n 
C18 H18A IVM sing 250 n n 
C18 H18B IVM sing 251 n n 
C19 C34 IVM sing 252 n n 
C19 H19 IVM sing 253 n n 
C20 C21 IVM sing 254 n n 
C20 H20 IVM sing 255 n n 
C21 C22 IVM sing 256 n n 
C21 H21 IVM sing 257 n n 
C21 H21A IVM sing 258 n n 
C24 C22 IVM sing 259 n n 
C22 H22 IVM sing 260 n n 
C23 H23 IVM sing 261 n n 
C23 H23A IVM sing 262 n n 
C23 H23B IVM sing 263 n n 
C32 C24 IVM sing 264 n n 
C24 H24 IVM sing 265 n n 
C25 C26 IVM sing 266 n n 
C25 H25 IVM sing 267 n n 
C26 C27 IVM sing 268 n n 
C26 H26 IVM sing 269 n n 
C26 H26A IVM sing 270 n n 
C27 C29 IVM sing 271 n n 
C27 H27 IVM sing 272 n n 
C28 H28 IVM sing 273 n n 
C28 H28A IVM sing 274 n n 
C28 H28B IVM sing 275 n n 
C30 C29 IVM sing 276 n n 
C29 H29 IVM sing 277 n n 
C30 C31 IVM sing 278 n n 
C30 H30 IVM sing 279 n n 
C31 H31 IVM sing 280 n n 
C31 H31A IVM sing 281 n n 
C31 H31B IVM sing 282 n n 
C33 C32 IVM sing 283 n n 
C32 H32 IVM sing 284 n n 
C33 H33 IVM sing 285 n n 
C33 H33A IVM sing 286 n n 
C33 H33B IVM sing 287 n n 
C34 C35 IVM sing 288 n n 
C34 C36 IVM sing 289 n n 
C34 H34 IVM sing 290 n n 
C35 H35 IVM sing 291 n n 
C35 H35A IVM sing 292 n n 
C35 H35B IVM sing 293 n n 
C36 C37 IVM doub 294 e n 
C36 H36 IVM sing 295 n n 
C37 C38 IVM sing 296 n n 
C37 H37 IVM sing 297 n n 
C38 C39 IVM doub 298 e n 
C38 H38 IVM sing 299 n n 
C40 C39 IVM sing 300 n n 
C39 C47 IVM sing 301 n n 
C40 H40 IVM sing 302 n n 
C40 H40A IVM sing 303 n n 
C47 C41 IVM sing 304 n n 
C41 C42 IVM sing 305 n n 
C41 H41 IVM sing 306 n n 
C42 C43 IVM sing 307 n n 
C42 H42 IVM sing 308 n n 
C44 C43 IVM doub 309 n n 
C43 C48 IVM sing 310 n n 
C45 C44 IVM sing 311 n n 
C44 H44 IVM sing 312 n n 
C46 C45 IVM sing 313 n n 
C45 C47 IVM sing 314 n n 
C45 H45 IVM sing 315 n n 
C48 H48 IVM sing 316 n n 
C48 H48A IVM sing 317 n n 
C48 H48B IVM sing 318 n n 
#
_atom_sites.entry_id                     4WVD 
_atom_sites.fract_transf_matrix[1][1]    0.018865 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FMT A 1 501 1 FMT FMT . 
F 3 FMT A 1 502 2 FMT FMT . 
G 3 FMT A 1 503 3 FMT FMT . 
H 3 FMT A 1 504 4 FMT FMT . 
I 4 IVM A 1 505 2 IVM IVM . 
J 3 FMT B 1 501 5 FMT FMT . 
K 3 FMT B 1 502 6 FMT FMT . 
L 3 FMT B 1 503 7 FMT FMT . 
M 3 FMT B 1 504 8 FMT FMT . 
N 4 IVM B 1 505 3 IVM IVM . 
O 5 HOH A 1 601 1 HOH HOH . 
O 5 HOH A 2 602 5 HOH HOH . 
O 5 HOH A 3 603 21 HOH HOH . 
O 5 HOH A 4 604 22 HOH HOH . 
O 5 HOH A 5 605 44 HOH HOH . 
P 5 HOH D 1 2301 30 HOH HOH . 
P 5 HOH D 2 2302 31 HOH HOH . 
P 5 HOH D 3 2303 33 HOH HOH . 
Q 5 HOH B 1 601 38 HOH HOH . 
Q 5 HOH B 2 602 2 HOH HOH . 
Q 5 HOH B 3 603 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IVM . . . N 4 -24.911 12.158 -15.884 1 20 ? C1 IVM 505 B 1 
HETATM 2 O O1 IVM . . . N 4 -22.934 14.11 -18.873 1 20 ? O1 IVM 505 B 1 
HETATM 3 C C2 IVM . . . N 4 -25.085 13.631 -16.178 1 20 ? C2 IVM 505 B 1 
HETATM 4 O O2 IVM . . . N 4 -17.881 11.106 -22.608 1 20 ? O2 IVM 505 B 1 
HETATM 5 C C3 IVM . . . N 4 -24.936 13.884 -17.671 1 20 ? C3 IVM 505 B 1 
HETATM 6 O O3 IVM . . . N 4 -20.846 8.504 -23.682 1 20 ? O3 IVM 505 B 1 
HETATM 7 C C4 IVM . . . N 4 -26.067 13.247 -18.444 1 20 ? C4 IVM 505 B 1 
HETATM 8 O O4 IVM . . . N 4 -18.798 8.039 -25.389 1 20 ? O4 IVM 505 B 1 
HETATM 9 C C5 IVM . . . N 4 -23.675 13.225 -18.089 1 20 ? C5 IVM 505 B 1 
HETATM 10 O O5 IVM . . . N 4 -19.529 6.818 -29.196 1 20 ? O5 IVM 505 B 1 
HETATM 11 C C6 IVM . . . N 4 -22.228 15.071 -18.119 1 20 ? C6 IVM 505 B 1 
HETATM 12 O O6 IVM . . . N 4 -17.154 5.736 -28.79 1 20 ? O6 IVM 505 B 1 
HETATM 13 C C7 IVM . . . N 4 -22.951 15.37 -16.854 1 20 ? C7 IVM 505 B 1 
HETATM 14 O O7 IVM . . . N 4 -18.356 5.865 -25.505 1 20 ? O7 IVM 505 B 1 
HETATM 15 C C8 IVM . . . N 4 -22.859 14.172 -15.981 1 20 ? C8 IVM 505 B 1 
HETATM 16 O O8 IVM . . . N 4 -17.118 8.965 -22.555 1 20 ? O8 IVM 505 B 1 
HETATM 17 C C9 IVM . . . N 4 -22.964 12.932 -16.825 1 20 ? C9 IVM 505 B 1 
HETATM 18 O O9 IVM . . . N 4 -18.824 19.484 -24.183 1 20 ? O9 IVM 505 B 1 
HETATM 19 C C10 IVM . . . N 4 -21.59 12.384 -17.178 1 20 ? C10 IVM 505 B 1 
HETATM 20 O O10 IVM . . . N 4 -19.799 21.806 -24.343 1 20 ? O10 IVM 505 B 1 
HETATM 21 C C11 IVM . . . N 4 -22.022 16.328 -18.976 1 20 ? C11 IVM 505 B 1 
HETATM 22 O O11 IVM . . . N 4 -21.852 18.448 -19.853 1 20 ? O11 IVM 505 B 1 
HETATM 23 C C12 IVM . . . N 4 -21.529 15.803 -20.299 1 20 ? C12 IVM 505 B 1 
HETATM 24 O O12 IVM . . . N 4 -21.21 16.821 -21.26 1 20 ? O12 IVM 505 B 1 
HETATM 25 C C13 IVM . . . N 4 -20.31 14.898 -20.058 1 20 ? C13 IVM 505 B 1 
HETATM 26 O O13 IVM . . . N 4 -21.727 17.795 -23.379 1 20 ? O13 IVM 505 B 1 
HETATM 27 C C14 IVM . . . N 4 -20.624 13.835 -19.014 1 20 ? C14 IVM 505 B 1 
HETATM 28 O O14 IVM . . . N 4 -21.006 14.499 -17.84 1 20 ? O14 IVM 505 B 1 
HETATM 29 C C15 IVM . . . N 4 -19.405 13.026 -18.718 1 20 ? C15 IVM 505 B 1 
HETATM 30 C C16 IVM . . . N 4 -18.42 13.116 -19.69 1 20 ? C16 IVM 505 B 1 
HETATM 31 C C17 IVM . . . N 4 -18.385 12.123 -20.651 1 20 ? C17 IVM 505 B 1 
HETATM 32 C C18 IVM . . . N 4 -19.341 11.134 -20.601 1 20 ? C18 IVM 505 B 1 
HETATM 33 C C19 IVM . . . N 4 -17.439 12.056 -21.644 1 20 ? C19 IVM 505 B 1 
HETATM 34 C C20 IVM . . . N 4 -18.008 9.862 -21.976 1 20 ? C20 IVM 505 B 1 
HETATM 35 C C21 IVM . . . N 4 -19.39 9.356 -22.15 1 20 ? C21 IVM 505 B 1 
HETATM 36 C C22 IVM . . . N 4 -19.625 9.114 -23.58 1 20 ? C22 IVM 505 B 1 
HETATM 37 C C23 IVM . . . N 4 -21.618 9.103 -22.661 1 20 ? C23 IVM 505 B 1 
HETATM 38 C C24 IVM . . . N 4 -18.609 8.187 -24.049 1 20 ? C24 IVM 505 B 1 
HETATM 39 C C25 IVM . . . N 4 -19.385 6.843 -25.589 1 20 ? C25 IVM 505 B 1 
HETATM 40 C C26 IVM . . . N 4 -19.996 6.891 -26.949 1 20 ? C26 IVM 505 B 1 
HETATM 41 C C27 IVM . . . N 4 -18.926 6.928 -27.961 1 20 ? C27 IVM 505 B 1 
HETATM 42 C C28 IVM . . . N 4 -20.741 7.54 -29.055 1 20 ? C28 IVM 505 B 1 
HETATM 43 C C29 IVM . . . N 4 -18.094 5.755 -27.762 1 20 ? C29 IVM 505 B 1 
HETATM 44 C C30 IVM . . . N 4 -17.404 5.988 -26.502 1 20 ? C30 IVM 505 B 1 
HETATM 45 C C31 IVM . . . N 4 -16.361 4.902 -26.329 1 20 ? C31 IVM 505 B 1 
HETATM 46 C C32 IVM . . . N 4 -17.326 8.848 -23.892 1 20 ? C32 IVM 505 B 1 
HETATM 47 C C33 IVM . . . N 4 -16.273 7.922 -24.449 1 20 ? C33 IVM 505 B 1 
HETATM 48 C C34 IVM . . . N 4 -17.239 13.405 -22.312 1 20 ? C34 IVM 505 B 1 
HETATM 49 C C35 IVM . . . N 4 -17.096 13.182 -23.804 1 20 ? C35 IVM 505 B 1 
HETATM 50 C C36 IVM . . . N 4 -18.315 14.245 -22.113 1 20 ? C36 IVM 505 B 1 
HETATM 51 C C37 IVM . . . N 4 -18.354 15.47 -22.775 1 20 ? C37 IVM 505 B 1 
HETATM 52 C C38 IVM . . . N 4 -19.41 16.372 -22.616 1 20 ? C38 IVM 505 B 1 
HETATM 53 C C39 IVM . . . N 4 -19.437 17.539 -23.266 1 20 ? C39 IVM 505 B 1 
HETATM 54 C C40 IVM . . . N 4 -18.524 18.103 -24.156 1 20 ? C40 IVM 505 B 1 
HETATM 55 C C41 IVM . . . N 4 -20.221 19.445 -24.192 1 20 ? C41 IVM 505 B 1 
HETATM 56 C C42 IVM . . . N 4 -20.783 20.845 -23.978 1 20 ? C42 IVM 505 B 1 
HETATM 57 C C43 IVM . . . N 4 -21.19 21.107 -22.693 1 20 ? C43 IVM 505 B 1 
HETATM 58 C C44 IVM . . . N 4 -21.098 20.215 -21.633 1 20 ? C44 IVM 505 B 1 
HETATM 59 C C45 IVM . . . N 4 -20.539 18.962 -21.675 1 20 ? C45 IVM 505 B 1 
HETATM 60 C C46 IVM . . . N 4 -21.257 18.087 -20.855 1 20 ? C46 IVM 505 B 1 
HETATM 61 C C47 IVM . . . N 4 -20.497 18.419 -23.103 1 20 ? C47 IVM 505 B 1 
HETATM 62 C C48 IVM . . . N 4 -21.755 22.341 -22.459 1 20 ? C48 IVM 505 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           62 
#