data_4WVL # _model_server_result.job_id lbbl3SMsZHOOi_D2to97Kw _model_server_result.datetime_utc '2024-10-19 10:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WVL # _exptl.entry_id 4WVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.815 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[4-(acetylamino)butyl]-5'-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5'-deoxyadenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WVL _cell.length_a 151.104 _cell.length_b 151.104 _cell.length_c 53.387 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H51 N9 O5' _chem_comp.formula_weight 653.815 _chem_comp.id 3US _chem_comp.mon_nstd_flag . _chem_comp.name "N-[4-(acetylamino)butyl]-5'-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 3US sing 1 n n C12 C13 3US sing 2 n n OAP CAL 3US sing 3 n n C10 C11 3US sing 4 n n C10 N9 3US sing 5 n n C18 C16 3US sing 6 n n N15 C16 3US sing 7 n n N15 C13 3US sing 8 n n C16 O17 3US doub 9 n n CAL CAM 3US sing 10 n n CAL CAK 3US sing 11 n n N9 C7 3US sing 12 n n OAQ CAM 3US sing 13 n n C7 N8 3US doub 14 n y C7 C3 3US sing 15 n y N2 C3 3US sing 16 n y N2 C1 3US doub 17 n y N8 C6 3US sing 18 n y C3 C4 3US doub 19 n y C1 NAG 3US sing 20 n y C6 N5 3US doub 21 n y C4 NAG 3US sing 22 n y C4 N5 3US sing 23 n y CAM CAN 3US sing 24 n n NAG CAK 3US sing 25 n n CAK OAO 3US sing 26 n n CAN OAO 3US sing 27 n n CAN CAR 3US sing 28 n n CAR NAS 3US sing 29 n n NAS CAU 3US sing 30 n n NAS CAT 3US sing 31 n n CAU CBL 3US sing 32 n n CAU CBM 3US sing 33 n n CAV CAT 3US sing 34 n n CAV CAW 3US sing 35 n n CAW NAX 3US sing 36 n n NAX CAY 3US sing 37 n n OBA CAY 3US doub 38 n n CAY NAZ 3US sing 39 n n NAZ CBB 3US sing 40 n n CBB CBC 3US doub 41 n y CBB CBG 3US sing 42 n y CBC CBD 3US sing 43 n y CBG CBF 3US doub 44 n y CBD CBE 3US doub 45 n y CBF CBE 3US sing 46 n y CBE CBH 3US sing 47 n n CBI CBH 3US sing 48 n n CBH CBK 3US sing 49 n n CBH CBJ 3US sing 50 n n C1 H1 3US sing 51 n n NAZ H2 3US sing 52 n n CBG H3 3US sing 53 n n CBF H4 3US sing 54 n n CBC H5 3US sing 55 n n CBD H6 3US sing 56 n n CBK H7 3US sing 57 n n CBK H8 3US sing 58 n n CBK H9 3US sing 59 n n CBJ H10 3US sing 60 n n CBJ H11 3US sing 61 n n CBJ H12 3US sing 62 n n CBI H13 3US sing 63 n n CBI H14 3US sing 64 n n CBI H15 3US sing 65 n n NAX H16 3US sing 66 n n CAW H17 3US sing 67 n n CAW H18 3US sing 68 n n CAV H19 3US sing 69 n n CAV H20 3US sing 70 n n CAT H21 3US sing 71 n n CAT H22 3US sing 72 n n CAU H24 3US sing 73 n n CBL H25 3US sing 74 n n CBL H26 3US sing 75 n n CBL H27 3US sing 76 n n CBM H28 3US sing 77 n n CBM H29 3US sing 78 n n CBM H30 3US sing 79 n n CAR H31 3US sing 80 n n CAR H32 3US sing 81 n n CAN H33 3US sing 82 n n CAM H34 3US sing 83 n n OAQ H35 3US sing 84 n n CAL H36 3US sing 85 n n OAP H37 3US sing 86 n n CAK H38 3US sing 87 n n C6 H39 3US sing 88 n n N9 H40 3US sing 89 n n C10 H41 3US sing 90 n n C10 H42 3US sing 91 n n C11 H43 3US sing 92 n n C11 H44 3US sing 93 n n C12 H45 3US sing 94 n n C12 H46 3US sing 95 n n C13 H47 3US sing 96 n n C13 H48 3US sing 97 n n N15 H49 3US sing 98 n n C18 H50 3US sing 99 n n C18 H51 3US sing 100 n n C18 H52 3US sing 101 n n # _atom_sites.entry_id 4WVL _atom_sites.fract_transf_matrix[1][1] 0.006618 _atom_sites.fract_transf_matrix[1][2] 0.003821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3US A 1 401 401 3US 3US . C 3 SO4 A 1 402 402 SO4 SO4 . D 3 SO4 A 1 403 403 SO4 SO4 . E 3 SO4 A 1 404 404 SO4 SO4 . F 4 GOL A 1 405 405 GOL GOL . G 5 EDO A 1 406 406 EDO EDO . H 5 EDO A 1 407 407 EDO EDO . I 5 EDO A 1 408 408 EDO EDO . J 6 HOH A 1 501 501 HOH HOH . J 6 HOH A 2 502 502 HOH HOH . J 6 HOH A 3 503 503 HOH HOH . J 6 HOH A 4 504 504 HOH HOH . J 6 HOH A 5 505 505 HOH HOH . J 6 HOH A 6 506 506 HOH HOH . J 6 HOH A 7 507 507 HOH HOH . J 6 HOH A 8 508 508 HOH HOH . J 6 HOH A 9 509 509 HOH HOH . J 6 HOH A 10 510 510 HOH HOH . J 6 HOH A 11 511 511 HOH HOH . J 6 HOH A 12 512 512 HOH HOH . J 6 HOH A 13 513 513 HOH HOH . J 6 HOH A 14 514 514 HOH HOH . J 6 HOH A 15 515 515 HOH HOH . J 6 HOH A 16 516 516 HOH HOH . J 6 HOH A 17 517 517 HOH HOH . J 6 HOH A 18 518 518 HOH HOH . J 6 HOH A 19 519 519 HOH HOH . J 6 HOH A 20 520 520 HOH HOH . J 6 HOH A 21 521 521 HOH HOH . J 6 HOH A 22 522 522 HOH HOH . J 6 HOH A 23 523 523 HOH HOH . J 6 HOH A 24 524 524 HOH HOH . J 6 HOH A 25 525 525 HOH HOH . J 6 HOH A 26 526 526 HOH HOH . J 6 HOH A 27 527 527 HOH HOH . J 6 HOH A 28 528 528 HOH HOH . J 6 HOH A 29 529 529 HOH HOH . J 6 HOH A 30 530 530 HOH HOH . J 6 HOH A 31 531 531 HOH HOH . J 6 HOH A 32 532 532 HOH HOH . J 6 HOH A 33 533 533 HOH HOH . J 6 HOH A 34 534 534 HOH HOH . J 6 HOH A 35 535 535 HOH HOH . J 6 HOH A 36 536 536 HOH HOH . J 6 HOH A 37 537 537 HOH HOH . J 6 HOH A 38 538 538 HOH HOH . J 6 HOH A 39 539 539 HOH HOH . J 6 HOH A 40 540 540 HOH HOH . J 6 HOH A 41 541 541 HOH HOH . J 6 HOH A 42 542 542 HOH HOH . J 6 HOH A 43 543 543 HOH HOH . J 6 HOH A 44 544 544 HOH HOH . J 6 HOH A 45 545 545 HOH HOH . J 6 HOH A 46 546 546 HOH HOH . J 6 HOH A 47 547 547 HOH HOH . J 6 HOH A 48 548 548 HOH HOH . J 6 HOH A 49 549 549 HOH HOH . J 6 HOH A 50 550 550 HOH HOH . J 6 HOH A 51 551 551 HOH HOH . J 6 HOH A 52 552 552 HOH HOH . J 6 HOH A 53 553 553 HOH HOH . J 6 HOH A 54 554 554 HOH HOH . J 6 HOH A 55 555 555 HOH HOH . J 6 HOH A 56 556 556 HOH HOH . J 6 HOH A 57 557 557 HOH HOH . J 6 HOH A 58 558 558 HOH HOH . J 6 HOH A 59 559 559 HOH HOH . J 6 HOH A 60 560 560 HOH HOH . J 6 HOH A 61 561 561 HOH HOH . J 6 HOH A 62 562 562 HOH HOH . J 6 HOH A 63 563 563 HOH HOH . J 6 HOH A 64 564 564 HOH HOH . J 6 HOH A 65 565 565 HOH HOH . J 6 HOH A 66 566 566 HOH HOH . J 6 HOH A 67 567 567 HOH HOH . J 6 HOH A 68 568 568 HOH HOH . J 6 HOH A 69 569 569 HOH HOH . J 6 HOH A 70 570 570 HOH HOH . J 6 HOH A 71 571 571 HOH HOH . J 6 HOH A 72 572 572 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3US . . . B 2 62.415 15.475 -12.281 1 44.3 ? C4 3US 401 A 1 HETATM 2 C C3 3US . . . B 2 62.505 16.895 -12.515 1 38.45 ? C3 3US 401 A 1 HETATM 3 C C1 3US . . . B 2 64.457 16.072 -12.381 1 43.68 ? C1 3US 401 A 1 HETATM 4 O OBA 3US . . . B 2 67.648 10.535 -4.477 1 45.77 ? OBA 3US 401 A 1 HETATM 5 C CAY 3US . . . B 2 66.47 10.656 -4.464 1 40.21 ? CAY 3US 401 A 1 HETATM 6 N NAZ 3US . . . B 2 65.843 11.283 -3.512 1 37.93 ? NAZ 3US 401 A 1 HETATM 7 C CBB 3US . . . B 2 66.426 11.917 -2.498 1 38.51 ? CBB 3US 401 A 1 HETATM 8 C CBG 3US . . . B 2 65.83 13.026 -1.958 1 34.08 ? CBG 3US 401 A 1 HETATM 9 C CBF 3US . . . B 2 66.414 13.686 -0.905 1 27.59 ? CBF 3US 401 A 1 HETATM 10 C CBC 3US . . . B 2 67.605 11.49 -1.958 1 34.39 ? CBC 3US 401 A 1 HETATM 11 C CBD 3US . . . B 2 68.194 12.146 -0.915 1 36.87 ? CBD 3US 401 A 1 HETATM 12 C CBE 3US . . . B 2 67.607 13.257 -0.368 1 41.43 ? CBE 3US 401 A 1 HETATM 13 C CBH 3US . . . B 2 68.269 13.954 0.787 1 53.12 ? CBH 3US 401 A 1 HETATM 14 C CBK 3US . . . B 2 67.884 15.411 0.826 1 52.34 ? CBK 3US 401 A 1 HETATM 15 C CBJ 3US . . . B 2 67.86 13.288 2.066 1 52.18 ? CBJ 3US 401 A 1 HETATM 16 C CBI 3US . . . B 2 69.767 13.878 0.702 1 48.52 ? CBI 3US 401 A 1 HETATM 17 N NAX 3US . . . B 2 65.748 10.153 -5.42 1 39.68 ? NAX 3US 401 A 1 HETATM 18 C CAW 3US . . . B 2 66.307 9.557 -6.601 1 34.72 ? CAW 3US 401 A 1 HETATM 19 C CAV 3US . . . B 2 66.357 10.469 -7.815 1 37.06 ? CAV 3US 401 A 1 HETATM 20 C CAT 3US . . . B 2 67.067 11.804 -7.627 1 40.08 ? CAT 3US 401 A 1 HETATM 21 N NAS 3US . . . B 2 66.552 12.808 -8.562 1 39.61 ? NAS 3US 401 A 1 HETATM 22 C CAU 3US . . . B 2 67.181 14.127 -8.47 1 45.38 ? CAU 3US 401 A 1 HETATM 23 C CBL 3US . . . B 2 66.192 15.103 -7.897 1 38.31 ? CBL 3US 401 A 1 HETATM 24 C CBM 3US . . . B 2 68.539 14.23 -7.798 1 30.63 ? CBM 3US 401 A 1 HETATM 25 C CAR 3US . . . B 2 66.805 12.447 -9.955 1 44.99 ? CAR 3US 401 A 1 HETATM 26 C CAN 3US . . . B 2 65.56 12.368 -10.815 1 42.2 ? CAN 3US 401 A 1 HETATM 27 C CAM 3US . . . B 2 65.873 12.161 -12.266 1 45.23 ? CAM 3US 401 A 1 HETATM 28 O OAQ 3US . . . B 2 65.26 10.94 -12.651 1 46.95 ? OAQ 3US 401 A 1 HETATM 29 C CAL 3US . . . B 2 65.177 13.295 -12.963 1 42.73 ? CAL 3US 401 A 1 HETATM 30 O OAP 3US . . . B 2 64.564 12.85 -14.141 1 48.71 ? OAP 3US 401 A 1 HETATM 31 C CAK 3US . . . B 2 64.113 13.675 -11.988 1 40.57 ? CAK 3US 401 A 1 HETATM 32 O OAO 3US . . . B 2 64.813 13.549 -10.793 1 44.35 ? OAO 3US 401 A 1 HETATM 33 N NAG 3US . . . B 2 63.651 15.044 -12.209 1 45.97 ? NAG 3US 401 A 1 HETATM 34 N N2 3US . . . B 2 63.78 17.186 -12.563 1 47.06 ? N2 3US 401 A 1 HETATM 35 N N5 3US . . . B 2 61.213 14.935 -12.178 1 38.65 ? N5 3US 401 A 1 HETATM 36 C C6 3US . . . B 2 60.144 15.702 -12.302 1 49.64 ? C6 3US 401 A 1 HETATM 37 C C7 3US . . . B 2 61.287 17.684 -12.635 1 44.31 ? C7 3US 401 A 1 HETATM 38 N N8 3US . . . B 2 60.153 17.015 -12.527 1 47.89 ? N8 3US 401 A 1 HETATM 39 N N9 3US . . . B 2 61.343 19.007 -12.86 1 52.97 ? N9 3US 401 A 1 HETATM 40 C C10 3US . . . B 2 61.905 19.492 -14.103 1 53.94 ? C10 3US 401 A 1 HETATM 41 C C11 3US . . . B 2 63.029 20.5 -13.979 1 65.86 ? C11 3US 401 A 1 HETATM 42 C C12 3US . . . B 2 64.337 20.091 -14.649 1 74.9 ? C12 3US 401 A 1 HETATM 43 C C13 3US . . . B 2 65.402 19.741 -13.61 1 78.3 ? C13 3US 401 A 1 HETATM 44 N N15 3US . . . B 2 66.753 20.154 -13.928 1 88.8 ? N15 3US 401 A 1 HETATM 45 C C16 3US . . . B 2 67.821 19.401 -13.66 1 89.17 ? C16 3US 401 A 1 HETATM 46 O O17 3US . . . B 2 67.74 18.327 -13.141 1 99.41 ? O17 3US 401 A 1 HETATM 47 C C18 3US . . . B 2 69.171 19.914 -14.027 1 80.01 ? C18 3US 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 47 #