data_4WVL # _model_server_result.job_id ywn9rWREzLamC6L--nDR8A _model_server_result.datetime_utc '2024-10-19 10:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 4WVL # _exptl.entry_id 4WVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WVL _cell.length_a 151.104 _cell.length_b 151.104 _cell.length_c 53.387 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 184 n n C1 C2 EDO sing 185 n n C1 H11 EDO sing 186 n n C1 H12 EDO sing 187 n n O1 HO1 EDO sing 188 n n C2 O2 EDO sing 189 n n C2 H21 EDO sing 190 n n C2 H22 EDO sing 191 n n O2 HO2 EDO sing 192 n n # _atom_sites.entry_id 4WVL _atom_sites.fract_transf_matrix[1][1] 0.006618 _atom_sites.fract_transf_matrix[1][2] 0.003821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3US A 1 401 401 3US 3US . C 3 SO4 A 1 402 402 SO4 SO4 . D 3 SO4 A 1 403 403 SO4 SO4 . E 3 SO4 A 1 404 404 SO4 SO4 . F 4 GOL A 1 405 405 GOL GOL . G 5 EDO A 1 406 406 EDO EDO . H 5 EDO A 1 407 407 EDO EDO . I 5 EDO A 1 408 408 EDO EDO . J 6 HOH A 1 501 501 HOH HOH . J 6 HOH A 2 502 502 HOH HOH . J 6 HOH A 3 503 503 HOH HOH . J 6 HOH A 4 504 504 HOH HOH . J 6 HOH A 5 505 505 HOH HOH . J 6 HOH A 6 506 506 HOH HOH . J 6 HOH A 7 507 507 HOH HOH . J 6 HOH A 8 508 508 HOH HOH . J 6 HOH A 9 509 509 HOH HOH . J 6 HOH A 10 510 510 HOH HOH . J 6 HOH A 11 511 511 HOH HOH . J 6 HOH A 12 512 512 HOH HOH . J 6 HOH A 13 513 513 HOH HOH . J 6 HOH A 14 514 514 HOH HOH . J 6 HOH A 15 515 515 HOH HOH . J 6 HOH A 16 516 516 HOH HOH . J 6 HOH A 17 517 517 HOH HOH . J 6 HOH A 18 518 518 HOH HOH . J 6 HOH A 19 519 519 HOH HOH . J 6 HOH A 20 520 520 HOH HOH . J 6 HOH A 21 521 521 HOH HOH . J 6 HOH A 22 522 522 HOH HOH . J 6 HOH A 23 523 523 HOH HOH . J 6 HOH A 24 524 524 HOH HOH . J 6 HOH A 25 525 525 HOH HOH . J 6 HOH A 26 526 526 HOH HOH . J 6 HOH A 27 527 527 HOH HOH . J 6 HOH A 28 528 528 HOH HOH . J 6 HOH A 29 529 529 HOH HOH . J 6 HOH A 30 530 530 HOH HOH . J 6 HOH A 31 531 531 HOH HOH . J 6 HOH A 32 532 532 HOH HOH . J 6 HOH A 33 533 533 HOH HOH . J 6 HOH A 34 534 534 HOH HOH . J 6 HOH A 35 535 535 HOH HOH . J 6 HOH A 36 536 536 HOH HOH . J 6 HOH A 37 537 537 HOH HOH . J 6 HOH A 38 538 538 HOH HOH . J 6 HOH A 39 539 539 HOH HOH . J 6 HOH A 40 540 540 HOH HOH . J 6 HOH A 41 541 541 HOH HOH . J 6 HOH A 42 542 542 HOH HOH . J 6 HOH A 43 543 543 HOH HOH . J 6 HOH A 44 544 544 HOH HOH . J 6 HOH A 45 545 545 HOH HOH . J 6 HOH A 46 546 546 HOH HOH . J 6 HOH A 47 547 547 HOH HOH . J 6 HOH A 48 548 548 HOH HOH . J 6 HOH A 49 549 549 HOH HOH . J 6 HOH A 50 550 550 HOH HOH . J 6 HOH A 51 551 551 HOH HOH . J 6 HOH A 52 552 552 HOH HOH . J 6 HOH A 53 553 553 HOH HOH . J 6 HOH A 54 554 554 HOH HOH . J 6 HOH A 55 555 555 HOH HOH . J 6 HOH A 56 556 556 HOH HOH . J 6 HOH A 57 557 557 HOH HOH . J 6 HOH A 58 558 558 HOH HOH . J 6 HOH A 59 559 559 HOH HOH . J 6 HOH A 60 560 560 HOH HOH . J 6 HOH A 61 561 561 HOH HOH . J 6 HOH A 62 562 562 HOH HOH . J 6 HOH A 63 563 563 HOH HOH . J 6 HOH A 64 564 564 HOH HOH . J 6 HOH A 65 565 565 HOH HOH . J 6 HOH A 66 566 566 HOH HOH . J 6 HOH A 67 567 567 HOH HOH . J 6 HOH A 68 568 568 HOH HOH . J 6 HOH A 69 569 569 HOH HOH . J 6 HOH A 70 570 570 HOH HOH . J 6 HOH A 71 571 571 HOH HOH . J 6 HOH A 72 572 572 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 65.421 -8.075 10.563 1 67.54 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 5 66.658 -8.092 11.281 1 64.47 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 5 64.313 -7.535 11.46 1 67.87 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 5 63.132 -7.349 10.672 1 60.83 ? O2 EDO 406 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #