data_4WVS
#
_model_server_result.job_id            NQugqjOqHVymXnH2kGAzWg 
_model_server_result.datetime_utc      '2025-03-05 21:18:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    4WVS 
#
_exptl.entry_id    4WVS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.53 
_cell.angle_gamma         90 
_cell.entry_id            4WVS 
_cell.length_a            28.187 
_cell.length_b            39.269 
_cell.length_c            32.947 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WVS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C MAA 1 B MAA 1 1_555 B N LPH 2 B LPH 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C LPH 2 B LPH 2 1_555 B N PRO 3 B PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 B C PHE 4 B PHE 4 1_555 B N 4LZ 5 B 4LZ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A SG CYS 67 A CYS 200 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A SG CYS 70 A CYS 203 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 A NE2 HIS 87 A HIS 220 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc4 A SG CYS 94 A CYS 227 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     4WVS 
_atom_sites.fract_transf_matrix[1][1]    0.035477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002811 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 501 ZN ZN . 
D 4 SO4 A 1 502 1 SO4 SO4 . 
E 4 SO4 A 1 503 2 SO4 SO4 . 
F 5 GOL A 1 504 3 GOL GOL . 
G 4 SO4 A 1 505 4 SO4 SO4 . 
H 6 HOH A 1 601 14 HOH HOH . 
H 6 HOH A 2 602 8 HOH HOH . 
H 6 HOH A 3 603 7 HOH HOH . 
H 6 HOH A 4 604 23 HOH HOH . 
H 6 HOH A 5 605 26 HOH HOH . 
H 6 HOH A 6 606 25 HOH HOH . 
H 6 HOH A 7 607 9 HOH HOH . 
H 6 HOH A 8 608 24 HOH HOH . 
H 6 HOH A 9 609 15 HOH HOH . 
H 6 HOH A 10 610 5 HOH HOH . 
H 6 HOH A 11 611 2 HOH HOH . 
H 6 HOH A 12 612 13 HOH HOH . 
H 6 HOH A 13 613 28 HOH HOH . 
H 6 HOH A 14 614 18 HOH HOH . 
H 6 HOH A 15 615 3 HOH HOH . 
H 6 HOH A 16 616 22 HOH HOH . 
H 6 HOH A 17 617 1 HOH HOH . 
H 6 HOH A 18 618 17 HOH HOH . 
H 6 HOH A 19 619 11 HOH HOH . 
H 6 HOH A 20 620 29 HOH HOH . 
H 6 HOH A 21 621 21 HOH HOH . 
H 6 HOH A 22 622 16 HOH HOH . 
H 6 HOH A 23 623 34 HOH HOH . 
H 6 HOH A 24 624 27 HOH HOH . 
H 6 HOH A 25 625 30 HOH HOH . 
H 6 HOH A 26 626 12 HOH HOH . 
H 6 HOH A 27 627 4 HOH HOH . 
H 6 HOH A 28 628 33 HOH HOH . 
H 6 HOH A 29 629 20 HOH HOH . 
H 6 HOH A 30 630 32 HOH HOH . 
H 6 HOH A 31 631 19 HOH HOH . 
H 6 HOH A 32 632 31 HOH HOH . 
I 6 HOH B 1 101 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 -6.44 -860.348 10.015 1 30.26 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . F 5 -7.484 -860.429 10.987 1 25.44 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . F 5 -5.253 -859.569 10.537 1 33.52 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . F 5 -5.732 -858.331 11.036 1 34.08 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . F 5 -4.379 -860.233 11.584 1 31.96 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . F 5 -5.115 -860.588 12.756 1 29.38 ? O3 GOL 504 A 1 
HETATM 7 H H11 GOL . . . F 5 -6.137 -861.341 9.688 1 30.94 ? H11 GOL 504 A 1 
HETATM 8 H H12 GOL . . . F 5 -6.823 -859.858 9.121 1 28.71 ? H12 GOL 504 A 1 
HETATM 9 H HO1 GOL . . . F 5 -8.324 -860.198 10.511 1 24.39 ? HO1 GOL 504 A 1 
HETATM 10 H H2 GOL . . . F 5 -4.634 -859.232 9.707 1 34.04 ? H2 GOL 504 A 1 
HETATM 11 H HO2 GOL . . . F 5 -4.948 -857.789 11.316 1 34.74 ? HO2 GOL 504 A 1 
HETATM 12 H H31 GOL . . . F 5 -3.867 -861.102 11.175 1 31.99 ? H31 GOL 504 A 1 
HETATM 13 H H32 GOL . . . F 5 -3.579 -859.55 11.866 1 30.5 ? H32 GOL 504 A 1 
HETATM 14 H HO3 GOL . . . F 5 -5.584 -861.437 12.544 1 29.29 ? HO3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#