data_4WVY # _model_server_result.job_id ii7nRODT1MvP2etZj8xOcg _model_server_result.datetime_utc '2024-12-21 12:17:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4WVY # _exptl.entry_id 4WVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WVY _cell.length_a 210.348 _cell.length_b 210.348 _cell.length_c 137.14 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3,4,6,8 A,B,C 2 1,2,3,5,7,9 A,B,C 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 4_554 y,x,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -137.14 6 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -137.14 8 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -137.14 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4WVY _atom_sites.fract_transf_matrix[1][1] 0.004754 _atom_sites.fract_transf_matrix[1][2] 0.002745 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ATP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ATP _pdbx_nonpoly_scheme.auth_mon_id ATP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -26.951 -16.781 -51.794 1 153.32 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . C 3 -27.126 -16.614 -53.257 1 153.07 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . C 3 -25.614 -17.263 -51.381 1 154.25 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . C 3 -27.513 -15.688 -50.967 1 153.81 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . C 3 -29.104 -18.582 -52.241 1 148.24 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . C 3 -28.516 -19.007 -53.523 1 148.33 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . C 3 -29.854 -19.572 -51.44 1 147.44 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . C 3 -27.887 -18.032 -51.358 1 150.83 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . C 3 -31.261 -16.831 -51.611 1 145.79 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . C 3 -30.948 -15.539 -50.957 1 145.65 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . C 3 -31.708 -17.963 -50.777 1 145.47 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . C 3 -29.985 -17.258 -52.499 1 146.96 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . C 3 -32.374 -16.604 -52.766 1 145.04 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . C 3 -33.595 -15.891 -52.508 1 143.53 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . C 3 -34.814 -16.822 -52.602 1 141.5 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . C 3 -34.674 -17.827 -53.647 1 140.74 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . C 3 -34.987 -17.579 -51.288 1 140.37 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . C 3 -36.338 -17.419 -50.82 1 140.02 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . C 3 -34.698 -19.013 -51.695 1 139.95 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . C 3 -35.382 -19.943 -50.863 1 139.81 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . C 3 -35.235 -19.032 -53.104 1 140.05 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . C 3 -34.834 -20.263 -53.841 1 139.68 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . C 3 -33.645 -20.502 -54.386 1 139.73 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . C 3 -33.686 -21.706 -54.949 1 139.83 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . C 3 -34.902 -22.217 -54.767 1 139.55 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . C 3 -35.456 -23.386 -55.138 1 139.31 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . C 3 -34.685 -24.234 -55.815 1 139.39 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . C 3 -36.73 -23.7 -54.844 1 139.02 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . C 3 -37.51 -22.779 -54.129 1 139.03 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . C 3 -36.903 -21.569 -53.749 1 139.14 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . C 3 -35.619 -21.315 -54.08 1 139.39 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #