data_4WW2 # _model_server_result.job_id xFQcES0rU-W7cjvrWB8Ktg _model_server_result.datetime_utc '2024-12-04 05:44:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ww2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4WW2 # _exptl.entry_id 4WW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.28 _cell.angle_gamma 90 _cell.entry_id 4WW2 _cell.length_a 209.99 _cell.length_b 46.3 _cell.length_c 124.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 91 A CYS 104 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 24 A CYS 23 1_555 A SG CYS 91 A CYS 104 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 136 A CYS 149 1_555 A SG CYS 186 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 161 A CYS 174 1_555 B SG CYS 170 B CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 24 B CYS 23 1_555 B SG CYS 93 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 B SG CYS 144 B CYS 155 1_555 B SG CYS 209 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 C SG CYS 207 C CYS 206 1_555 C SG CYS 262 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? covale ? covale1 C ND2 ASN 21 C ASN 20 1_555 E C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 43 C ASN 42 1_555 F C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 388 n n C1 O1 NAG sing 389 n n C1 O5 NAG sing 390 n n C1 H1 NAG sing 391 n n C2 C3 NAG sing 392 n n C2 N2 NAG sing 393 n n C2 H2 NAG sing 394 n n C3 C4 NAG sing 395 n n C3 O3 NAG sing 396 n n C3 H3 NAG sing 397 n n C4 C5 NAG sing 398 n n C4 O4 NAG sing 399 n n C4 H4 NAG sing 400 n n C5 C6 NAG sing 401 n n C5 O5 NAG sing 402 n n C5 H5 NAG sing 403 n n C6 O6 NAG sing 404 n n C6 H61 NAG sing 405 n n C6 H62 NAG sing 406 n n C7 C8 NAG sing 407 n n C7 N2 NAG sing 408 n n C7 O7 NAG doub 409 n n C8 H81 NAG sing 410 n n C8 H82 NAG sing 411 n n C8 H83 NAG sing 412 n n N2 HN2 NAG sing 413 n n O1 HO1 NAG sing 414 n n O3 HO3 NAG sing 415 n n O4 HO4 NAG sing 416 n n O6 HO6 NAG sing 417 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4WW2 _atom_sites.fract_transf_matrix[1][1] 0.004762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG C 1 301 303 NAG NAG . F 5 NAG C 1 302 305 NAG NAG . G 6 JLS C 1 303 3000 JLS JLS . H 7 HOH A 1 301 87 HOH HOH . H 7 HOH A 2 302 4 HOH HOH . H 7 HOH A 3 303 181 HOH HOH . H 7 HOH A 4 304 225 HOH HOH . H 7 HOH A 5 305 129 HOH HOH . H 7 HOH A 6 306 234 HOH HOH . H 7 HOH A 7 307 5 HOH HOH . H 7 HOH A 8 308 78 HOH HOH . H 7 HOH A 9 309 12 HOH HOH . H 7 HOH A 10 310 3 HOH HOH . H 7 HOH A 11 311 68 HOH HOH . H 7 HOH A 12 312 18 HOH HOH . H 7 HOH A 13 313 218 HOH HOH . H 7 HOH A 14 314 96 HOH HOH . H 7 HOH A 15 315 45 HOH HOH . H 7 HOH A 16 316 112 HOH HOH . H 7 HOH A 17 317 43 HOH HOH . H 7 HOH A 18 318 8 HOH HOH . H 7 HOH A 19 319 31 HOH HOH . H 7 HOH A 20 320 242 HOH HOH . H 7 HOH A 21 321 107 HOH HOH . H 7 HOH A 22 322 59 HOH HOH . H 7 HOH A 23 323 60 HOH HOH . H 7 HOH A 24 324 25 HOH HOH . H 7 HOH A 25 325 81 HOH HOH . H 7 HOH A 26 326 222 HOH HOH . H 7 HOH A 27 327 86 HOH HOH . H 7 HOH A 28 328 35 HOH HOH . H 7 HOH A 29 329 72 HOH HOH . H 7 HOH A 30 330 32 HOH HOH . H 7 HOH A 31 331 91 HOH HOH . H 7 HOH A 32 332 110 HOH HOH . H 7 HOH A 33 333 52 HOH HOH . H 7 HOH A 34 334 201 HOH HOH . H 7 HOH A 35 335 163 HOH HOH . H 7 HOH A 36 336 204 HOH HOH . H 7 HOH A 37 337 36 HOH HOH . H 7 HOH A 38 338 71 HOH HOH . H 7 HOH A 39 339 33 HOH HOH . H 7 HOH A 40 340 238 HOH HOH . H 7 HOH A 41 341 105 HOH HOH . H 7 HOH A 42 342 166 HOH HOH . H 7 HOH A 43 343 24 HOH HOH . H 7 HOH A 44 344 54 HOH HOH . H 7 HOH A 45 345 84 HOH HOH . H 7 HOH A 46 346 82 HOH HOH . H 7 HOH A 47 347 131 HOH HOH . H 7 HOH A 48 348 15 HOH HOH . H 7 HOH A 49 349 100 HOH HOH . H 7 HOH A 50 350 179 HOH HOH . I 7 HOH B 1 301 10 HOH HOH . I 7 HOH B 2 302 39 HOH HOH . I 7 HOH B 3 303 1 HOH HOH . I 7 HOH B 4 304 180 HOH HOH . I 7 HOH B 5 305 170 HOH HOH . I 7 HOH B 6 306 17 HOH HOH . I 7 HOH B 7 307 50 HOH HOH . I 7 HOH B 8 308 23 HOH HOH . I 7 HOH B 9 309 21 HOH HOH . I 7 HOH B 10 310 22 HOH HOH . I 7 HOH B 11 311 44 HOH HOH . I 7 HOH B 12 312 139 HOH HOH . I 7 HOH B 13 313 124 HOH HOH . I 7 HOH B 14 314 2 HOH HOH . I 7 HOH B 15 315 76 HOH HOH . I 7 HOH B 16 316 164 HOH HOH . I 7 HOH B 17 317 49 HOH HOH . I 7 HOH B 18 318 80 HOH HOH . I 7 HOH B 19 319 53 HOH HOH . I 7 HOH B 20 320 212 HOH HOH . I 7 HOH B 21 321 40 HOH HOH . I 7 HOH B 22 322 99 HOH HOH . I 7 HOH B 23 323 116 HOH HOH . I 7 HOH B 24 324 34 HOH HOH . I 7 HOH B 25 325 28 HOH HOH . I 7 HOH B 26 326 48 HOH HOH . I 7 HOH B 27 327 176 HOH HOH . I 7 HOH B 28 328 230 HOH HOH . I 7 HOH B 29 329 13 HOH HOH . I 7 HOH B 30 330 104 HOH HOH . I 7 HOH B 31 331 165 HOH HOH . I 7 HOH B 32 332 61 HOH HOH . I 7 HOH B 33 333 37 HOH HOH . I 7 HOH B 34 334 207 HOH HOH . I 7 HOH B 35 335 130 HOH HOH . I 7 HOH B 36 336 221 HOH HOH . I 7 HOH B 37 337 85 HOH HOH . I 7 HOH B 38 338 74 HOH HOH . I 7 HOH B 39 339 92 HOH HOH . I 7 HOH B 40 340 172 HOH HOH . I 7 HOH B 41 341 184 HOH HOH . I 7 HOH B 42 342 144 HOH HOH . I 7 HOH B 43 343 30 HOH HOH . I 7 HOH B 44 344 153 HOH HOH . I 7 HOH B 45 345 62 HOH HOH . I 7 HOH B 46 346 134 HOH HOH . I 7 HOH B 47 347 95 HOH HOH . I 7 HOH B 48 348 64 HOH HOH . I 7 HOH B 49 349 102 HOH HOH . I 7 HOH B 50 350 11 HOH HOH . I 7 HOH B 51 351 122 HOH HOH . I 7 HOH B 52 352 123 HOH HOH . I 7 HOH B 53 353 154 HOH HOH . I 7 HOH B 54 354 113 HOH HOH . I 7 HOH B 55 355 6 HOH HOH . I 7 HOH B 56 356 51 HOH HOH . I 7 HOH B 57 357 38 HOH HOH . I 7 HOH B 58 358 26 HOH HOH . I 7 HOH B 59 359 101 HOH HOH . I 7 HOH B 60 360 16 HOH HOH . I 7 HOH B 61 361 66 HOH HOH . I 7 HOH B 62 362 125 HOH HOH . I 7 HOH B 63 363 150 HOH HOH . I 7 HOH B 64 364 178 HOH HOH . I 7 HOH B 65 365 198 HOH HOH . J 7 HOH C 1 401 7 HOH HOH . J 7 HOH C 2 402 239 HOH HOH . J 7 HOH C 3 403 182 HOH HOH . J 7 HOH C 4 404 183 HOH HOH . J 7 HOH C 5 405 136 HOH HOH . J 7 HOH C 6 406 237 HOH HOH . J 7 HOH C 7 407 138 HOH HOH . J 7 HOH C 8 408 168 HOH HOH . J 7 HOH C 9 409 111 HOH HOH . J 7 HOH C 10 410 137 HOH HOH . J 7 HOH C 11 411 158 HOH HOH . J 7 HOH C 12 412 135 HOH HOH . J 7 HOH C 13 413 77 HOH HOH . J 7 HOH C 14 414 236 HOH HOH . J 7 HOH C 15 415 29 HOH HOH . J 7 HOH C 16 416 63 HOH HOH . J 7 HOH C 17 417 42 HOH HOH . J 7 HOH C 18 418 186 HOH HOH . J 7 HOH C 19 419 73 HOH HOH . J 7 HOH C 20 420 142 HOH HOH . J 7 HOH C 21 421 231 HOH HOH . J 7 HOH C 22 422 188 HOH HOH . J 7 HOH C 23 423 241 HOH HOH . J 7 HOH C 24 424 151 HOH HOH . J 7 HOH C 25 425 90 HOH HOH . J 7 HOH C 26 426 208 HOH HOH . J 7 HOH C 27 427 19 HOH HOH . J 7 HOH C 28 428 156 HOH HOH . J 7 HOH C 29 429 240 HOH HOH . J 7 HOH C 30 430 145 HOH HOH . J 7 HOH C 31 431 67 HOH HOH . J 7 HOH C 32 432 174 HOH HOH . J 7 HOH C 33 433 83 HOH HOH . J 7 HOH C 34 434 46 HOH HOH . J 7 HOH C 35 435 47 HOH HOH . J 7 HOH C 36 436 167 HOH HOH . J 7 HOH C 37 437 133 HOH HOH . J 7 HOH C 38 438 215 HOH HOH . J 7 HOH C 39 439 69 HOH HOH . J 7 HOH C 40 440 171 HOH HOH . J 7 HOH C 41 441 65 HOH HOH . J 7 HOH C 42 442 94 HOH HOH . J 7 HOH C 43 443 128 HOH HOH . J 7 HOH C 44 444 126 HOH HOH . J 7 HOH C 45 445 224 HOH HOH . J 7 HOH C 46 446 143 HOH HOH . J 7 HOH C 47 447 190 HOH HOH . J 7 HOH C 48 448 195 HOH HOH . K 7 HOH F 1 101 88 HOH HOH . K 7 HOH F 2 102 14 HOH HOH . K 7 HOH F 3 103 147 HOH HOH . K 7 HOH F 4 104 155 HOH HOH . K 7 HOH F 5 105 79 HOH HOH . K 7 HOH F 6 106 191 HOH HOH . K 7 HOH F 7 107 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 29.849 -16.631 38.32 1 115.25 ? C1 NAG 301 C 1 HETATM 2 C C2 NAG . . . E 5 30.864 -16.999 39.402 1 118.97 ? C2 NAG 301 C 1 HETATM 3 C C3 NAG . . . E 5 30.332 -18.3 40.001 1 120.48 ? C3 NAG 301 C 1 HETATM 4 C C4 NAG . . . E 5 28.939 -18.088 40.589 1 120.3 ? C4 NAG 301 C 1 HETATM 5 C C5 NAG . . . E 5 27.98 -17.522 39.541 1 116.2 ? C5 NAG 301 C 1 HETATM 6 C C6 NAG . . . E 5 26.668 -17.054 40.127 1 115.76 ? C6 NAG 301 C 1 HETATM 7 C C7 NAG . . . E 5 33.211 -16.359 38.999 1 122 ? C7 NAG 301 C 1 HETATM 8 C C8 NAG . . . E 5 34.444 -16.659 38.201 1 122.27 ? C8 NAG 301 C 1 HETATM 9 N N2 NAG . . . E 5 32.183 -17.203 38.823 1 120.05 ? N2 NAG 301 C 1 HETATM 10 O O3 NAG . . . E 5 31.214 -18.759 41.018 1 124.3 ? O3 NAG 301 C 1 HETATM 11 O O4 NAG . . . E 5 28.437 -19.33 41.072 1 122.15 ? O4 NAG 301 C 1 HETATM 12 O O5 NAG . . . E 5 28.566 -16.376 38.898 1 114.37 ? O5 NAG 301 C 1 HETATM 13 O O6 NAG . . . E 5 25.949 -18.124 40.725 1 117.34 ? O6 NAG 301 C 1 HETATM 14 O O7 NAG . . . E 5 33.149 -15.399 39.763 1 123.38 ? O7 NAG 301 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #