data_4WW3
#
_model_server_result.job_id            PxolCm_YO14VxV8zThfyuQ 
_model_server_result.datetime_utc      '2024-11-28 02:19:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ww3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    4WW3 
#
_exptl.entry_id    4WW3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WW3 
_cell.length_a            122.39 
_cell.length_b            122.39 
_cell.length_c            158.77 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WW3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 62' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 100 A CYS 108 1_555 A SG CYS 178 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 100 B CYS 108 1_555 B SG CYS 178 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 A NZ LYS 297 A LYS 305 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 B NZ LYS 297 B LYS 305 1_555 I C15 RET . B RET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 515 n n 
C1 C6 RET sing 516 n n 
C1 C16 RET sing 517 n n 
C1 C17 RET sing 518 n n 
C2 C3 RET sing 519 n n 
C2 H21 RET sing 520 n n 
C2 H22 RET sing 521 n n 
C3 C4 RET sing 522 n n 
C3 H31 RET sing 523 n n 
C3 H32 RET sing 524 n n 
C4 C5 RET sing 525 n n 
C4 H41 RET sing 526 n n 
C4 H42 RET sing 527 n n 
C5 C6 RET doub 528 n n 
C5 C18 RET sing 529 n n 
C6 C7 RET sing 530 n n 
C7 C8 RET doub 531 e n 
C7 H7 RET sing 532 n n 
C8 C9 RET sing 533 n n 
C8 H8 RET sing 534 n n 
C9 C10 RET doub 535 e n 
C9 C19 RET sing 536 n n 
C10 C11 RET sing 537 n n 
C10 H10 RET sing 538 n n 
C11 C12 RET doub 539 e n 
C11 H11 RET sing 540 n n 
C12 C13 RET sing 541 n n 
C12 H12 RET sing 542 n n 
C13 C14 RET doub 543 e n 
C13 C20 RET sing 544 n n 
C14 C15 RET sing 545 n n 
C14 H14 RET sing 546 n n 
C15 O1 RET doub 547 n n 
C15 H15 RET sing 548 n n 
C16 H161 RET sing 549 n n 
C16 H162 RET sing 550 n n 
C16 H163 RET sing 551 n n 
C17 H171 RET sing 552 n n 
C17 H172 RET sing 553 n n 
C17 H173 RET sing 554 n n 
C18 H181 RET sing 555 n n 
C18 H182 RET sing 556 n n 
C18 H183 RET sing 557 n n 
C19 H191 RET sing 558 n n 
C19 H192 RET sing 559 n n 
C19 H193 RET sing 560 n n 
C20 H201 RET sing 561 n n 
C20 H202 RET sing 562 n n 
C20 H203 RET sing 563 n n 
#
_atom_sites.entry_id                     4WW3 
_atom_sites.fract_transf_matrix[1][1]    0.008171 
_atom_sites.fract_transf_matrix[1][2]    0.004717 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009435 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 401 1000 RET RET . 
D 3 PLM A 1 402 1001 PLM PLM . 
E 3 PLM A 1 403 1002 PLM PLM . 
F 4 TWT A 1 404 1003 TWT TWT . 
G 5 BOG A 1 405 1005 BOG BOG . 
H 6 SO4 B 1 401 401 SO4 SO4 . 
I 2 RET B 1 402 1000 RET RET . 
J 3 PLM B 1 403 1001 PLM PLM . 
K 3 PLM B 1 404 1002 PLM PLM . 
L 4 TWT B 1 405 1003 TWT TWT . 
M 7 PC1 B 1 406 1004 PC1 PC1 . 
N 5 BOG B 1 407 1005 BOG BOG . 
O 8 HOH A 1 501 506 HOH HOH . 
O 8 HOH A 2 502 510 HOH HOH . 
O 8 HOH A 3 503 502 HOH HOH . 
O 8 HOH A 4 504 503 HOH HOH . 
O 8 HOH A 5 505 525 HOH HOH . 
O 8 HOH A 6 506 511 HOH HOH . 
O 8 HOH A 7 507 500 HOH HOH . 
O 8 HOH A 8 508 527 HOH HOH . 
O 8 HOH A 9 509 514 HOH HOH . 
O 8 HOH A 10 510 518 HOH HOH . 
O 8 HOH A 11 511 522 HOH HOH . 
O 8 HOH A 12 512 515 HOH HOH . 
O 8 HOH A 13 513 512 HOH HOH . 
O 8 HOH A 14 514 517 HOH HOH . 
O 8 HOH A 15 515 507 HOH HOH . 
O 8 HOH A 16 516 519 HOH HOH . 
O 8 HOH A 17 517 529 HOH HOH . 
O 8 HOH A 18 518 508 HOH HOH . 
O 8 HOH A 19 519 523 HOH HOH . 
O 8 HOH A 20 520 526 HOH HOH . 
O 8 HOH A 21 521 513 HOH HOH . 
O 8 HOH A 22 522 516 HOH HOH . 
O 8 HOH A 23 523 504 HOH HOH . 
O 8 HOH A 24 524 524 HOH HOH . 
O 8 HOH A 25 525 521 HOH HOH . 
O 8 HOH A 26 526 505 HOH HOH . 
O 8 HOH A 27 527 520 HOH HOH . 
O 8 HOH A 28 528 509 HOH HOH . 
O 8 HOH A 29 529 501 HOH HOH . 
P 8 HOH B 1 501 511 HOH HOH . 
P 8 HOH B 2 502 525 HOH HOH . 
P 8 HOH B 3 503 521 HOH HOH . 
P 8 HOH B 4 504 500 HOH HOH . 
P 8 HOH B 5 505 510 HOH HOH . 
P 8 HOH B 6 506 522 HOH HOH . 
P 8 HOH B 7 507 515 HOH HOH . 
P 8 HOH B 8 508 508 HOH HOH . 
P 8 HOH B 9 509 523 HOH HOH . 
P 8 HOH B 10 510 519 HOH HOH . 
P 8 HOH B 11 511 518 HOH HOH . 
P 8 HOH B 12 512 506 HOH HOH . 
P 8 HOH B 13 513 512 HOH HOH . 
P 8 HOH B 14 514 516 HOH HOH . 
P 8 HOH B 15 515 517 HOH HOH . 
P 8 HOH B 16 516 503 HOH HOH . 
P 8 HOH B 17 517 513 HOH HOH . 
P 8 HOH B 18 518 505 HOH HOH . 
P 8 HOH B 19 519 502 HOH HOH . 
P 8 HOH B 20 520 529 HOH HOH . 
P 8 HOH B 21 521 507 HOH HOH . 
P 8 HOH B 22 522 504 HOH HOH . 
P 8 HOH B 23 523 520 HOH HOH . 
P 8 HOH B 24 524 524 HOH HOH . 
P 8 HOH B 25 525 527 HOH HOH . 
P 8 HOH B 26 526 526 HOH HOH . 
P 8 HOH B 27 527 528 HOH HOH . 
P 8 HOH B 28 528 514 HOH HOH . 
P 8 HOH B 29 529 509 HOH HOH . 
P 8 HOH B 30 530 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . I 2 20.536 42.961 11.464 1 41.75 ? C1 RET 402 B 1 
HETATM 2 C C2 RET . . . I 2 19.375 43.434 10.516 1 44.54 ? C2 RET 402 B 1 
HETATM 3 C C3 RET . . . I 2 19.009 42.569 9.429 1 44.2 ? C3 RET 402 B 1 
HETATM 4 C C4 RET . . . I 2 20.159 42.056 8.616 1 42.62 ? C4 RET 402 B 1 
HETATM 5 C C5 RET . . . I 2 21.354 41.6 9.412 1 40.92 ? C5 RET 402 B 1 
HETATM 6 C C6 RET . . . I 2 21.549 41.991 10.716 1 41.21 ? C6 RET 402 B 1 
HETATM 7 C C7 RET . . . I 2 22.744 41.52 11.534 1 42.84 ? C7 RET 402 B 1 
HETATM 8 C C8 RET . . . I 2 22.711 40.386 12.177 1 42.64 ? C8 RET 402 B 1 
HETATM 9 C C9 RET . . . I 2 23.668 39.633 12.982 1 41.81 ? C9 RET 402 B 1 
HETATM 10 C C10 RET . . . I 2 23.263 38.374 13.115 1 42.54 ? C10 RET 402 B 1 
HETATM 11 C C11 RET . . . I 2 23.794 37.194 13.702 1 42.69 ? C11 RET 402 B 1 
HETATM 12 C C12 RET . . . I 2 22.967 36.15 13.753 1 43.65 ? C12 RET 402 B 1 
HETATM 13 C C13 RET . . . I 2 23.219 34.763 14.028 1 45.64 ? C13 RET 402 B 1 
HETATM 14 C C14 RET . . . I 2 22.122 33.967 14.033 1 46.64 ? C14 RET 402 B 1 
HETATM 15 C C15 RET . . . I 2 22.038 32.536 14.26 1 49.8 ? C15 RET 402 B 1 
HETATM 16 C C16 RET . . . I 2 21.243 44.273 11.909 1 40.51 ? C16 RET 402 B 1 
HETATM 17 C C17 RET . . . I 2 19.919 42.304 12.681 1 38.8 ? C17 RET 402 B 1 
HETATM 18 C C18 RET . . . I 2 22.247 40.694 8.595 1 39.49 ? C18 RET 402 B 1 
HETATM 19 C C19 RET . . . I 2 24.922 40.239 13.55 1 37.02 ? C19 RET 402 B 1 
HETATM 20 C C20 RET . . . I 2 24.638 34.308 14.262 1 44.93 ? C20 RET 402 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#