data_4WW3 # _model_server_result.job_id xPvJZNmUzZfZB1KzIj22Sw _model_server_result.datetime_utc '2024-11-01 23:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ww3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":406}' # _entry.id 4WW3 # _exptl.entry_id 4WW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WW3 _cell.length_a 122.39 _cell.length_b 122.39 _cell.length_c 158.77 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 108 1_555 A SG CYS 178 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 100 B CYS 108 1_555 B SG CYS 178 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A NZ LYS 297 A LYS 305 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 B NZ LYS 297 B LYS 305 1_555 I C15 RET . B RET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 285 n n P O14 PC1 doub 286 n n P O13 PC1 sing 287 n n P O11 PC1 sing 288 n n O13 C11 PC1 sing 289 n n C11 C12 PC1 sing 290 n n C11 H111 PC1 sing 291 n n C11 H112 PC1 sing 292 n n C12 N PC1 sing 293 n n C12 H121 PC1 sing 294 n n C12 H122 PC1 sing 295 n n N C13 PC1 sing 296 n n N C14 PC1 sing 297 n n N C15 PC1 sing 298 n n C13 H131 PC1 sing 299 n n C13 H132 PC1 sing 300 n n C13 H133 PC1 sing 301 n n C14 H141 PC1 sing 302 n n C14 H142 PC1 sing 303 n n C14 H143 PC1 sing 304 n n C15 H151 PC1 sing 305 n n C15 H152 PC1 sing 306 n n C15 H153 PC1 sing 307 n n O11 C1 PC1 sing 308 n n C1 C2 PC1 sing 309 n n C1 H11 PC1 sing 310 n n C1 H12 PC1 sing 311 n n C2 O21 PC1 sing 312 n n C2 C3 PC1 sing 313 n n C2 H2 PC1 sing 314 n n O21 C21 PC1 sing 315 n n C21 O22 PC1 doub 316 n n C21 C22 PC1 sing 317 n n C22 C23 PC1 sing 318 n n C22 H221 PC1 sing 319 n n C22 H222 PC1 sing 320 n n C23 C24 PC1 sing 321 n n C23 H231 PC1 sing 322 n n C23 H232 PC1 sing 323 n n C24 C25 PC1 sing 324 n n C24 H241 PC1 sing 325 n n C24 H242 PC1 sing 326 n n C25 C26 PC1 sing 327 n n C25 H251 PC1 sing 328 n n C25 H252 PC1 sing 329 n n C26 C27 PC1 sing 330 n n C26 H261 PC1 sing 331 n n C26 H262 PC1 sing 332 n n C27 C28 PC1 sing 333 n n C27 H271 PC1 sing 334 n n C27 H272 PC1 sing 335 n n C28 C29 PC1 sing 336 n n C28 H281 PC1 sing 337 n n C28 H282 PC1 sing 338 n n C29 C2A PC1 sing 339 n n C29 H291 PC1 sing 340 n n C29 H292 PC1 sing 341 n n C2A C2B PC1 sing 342 n n C2A H2A1 PC1 sing 343 n n C2A H2A2 PC1 sing 344 n n C2B C2C PC1 sing 345 n n C2B H2B1 PC1 sing 346 n n C2B H2B2 PC1 sing 347 n n C2C C2D PC1 sing 348 n n C2C H2C1 PC1 sing 349 n n C2C H2C2 PC1 sing 350 n n C2D C2E PC1 sing 351 n n C2D H2D1 PC1 sing 352 n n C2D H2D2 PC1 sing 353 n n C2E C2F PC1 sing 354 n n C2E H2E1 PC1 sing 355 n n C2E H2E2 PC1 sing 356 n n C2F C2G PC1 sing 357 n n C2F H2F1 PC1 sing 358 n n C2F H2F2 PC1 sing 359 n n C2G C2H PC1 sing 360 n n C2G H2G1 PC1 sing 361 n n C2G H2G2 PC1 sing 362 n n C2H C2I PC1 sing 363 n n C2H H2H1 PC1 sing 364 n n C2H H2H2 PC1 sing 365 n n C2I H2I1 PC1 sing 366 n n C2I H2I2 PC1 sing 367 n n C2I H2I3 PC1 sing 368 n n C3 O31 PC1 sing 369 n n C3 H31 PC1 sing 370 n n C3 H32 PC1 sing 371 n n O31 C31 PC1 sing 372 n n C31 O32 PC1 doub 373 n n C31 C32 PC1 sing 374 n n C32 C33 PC1 sing 375 n n C32 H321 PC1 sing 376 n n C32 H322 PC1 sing 377 n n C33 C34 PC1 sing 378 n n C33 H331 PC1 sing 379 n n C33 H332 PC1 sing 380 n n C34 C35 PC1 sing 381 n n C34 H341 PC1 sing 382 n n C34 H342 PC1 sing 383 n n C35 C36 PC1 sing 384 n n C35 H351 PC1 sing 385 n n C35 H352 PC1 sing 386 n n C36 C37 PC1 sing 387 n n C36 H361 PC1 sing 388 n n C36 H362 PC1 sing 389 n n C37 C38 PC1 sing 390 n n C37 H371 PC1 sing 391 n n C37 H372 PC1 sing 392 n n C38 C39 PC1 sing 393 n n C38 H381 PC1 sing 394 n n C38 H382 PC1 sing 395 n n C39 C3A PC1 sing 396 n n C39 H391 PC1 sing 397 n n C39 H392 PC1 sing 398 n n C3A C3B PC1 sing 399 n n C3A H3A1 PC1 sing 400 n n C3A H3A2 PC1 sing 401 n n C3B C3C PC1 sing 402 n n C3B H3B1 PC1 sing 403 n n C3B H3B2 PC1 sing 404 n n C3C C3D PC1 sing 405 n n C3C H3C1 PC1 sing 406 n n C3C H3C2 PC1 sing 407 n n C3D C3E PC1 sing 408 n n C3D H3D1 PC1 sing 409 n n C3D H3D2 PC1 sing 410 n n C3E C3F PC1 sing 411 n n C3E H3E1 PC1 sing 412 n n C3E H3E2 PC1 sing 413 n n C3F C3G PC1 sing 414 n n C3F H3F1 PC1 sing 415 n n C3F H3F2 PC1 sing 416 n n C3G C3H PC1 sing 417 n n C3G H3G1 PC1 sing 418 n n C3G H3G2 PC1 sing 419 n n C3H C3I PC1 sing 420 n n C3H H3H1 PC1 sing 421 n n C3H H3H2 PC1 sing 422 n n C3I H3I1 PC1 sing 423 n n C3I H3I2 PC1 sing 424 n n C3I H3I3 PC1 sing 425 n n # _atom_sites.entry_id 4WW3 _atom_sites.fract_transf_matrix[1][1] 0.008171 _atom_sites.fract_transf_matrix[1][2] 0.004717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 401 1000 RET RET . D 3 PLM A 1 402 1001 PLM PLM . E 3 PLM A 1 403 1002 PLM PLM . F 4 TWT A 1 404 1003 TWT TWT . G 5 BOG A 1 405 1005 BOG BOG . H 6 SO4 B 1 401 401 SO4 SO4 . I 2 RET B 1 402 1000 RET RET . J 3 PLM B 1 403 1001 PLM PLM . K 3 PLM B 1 404 1002 PLM PLM . L 4 TWT B 1 405 1003 TWT TWT . M 7 PC1 B 1 406 1004 PC1 PC1 . N 5 BOG B 1 407 1005 BOG BOG . O 8 HOH A 1 501 506 HOH HOH . O 8 HOH A 2 502 510 HOH HOH . O 8 HOH A 3 503 502 HOH HOH . O 8 HOH A 4 504 503 HOH HOH . O 8 HOH A 5 505 525 HOH HOH . O 8 HOH A 6 506 511 HOH HOH . O 8 HOH A 7 507 500 HOH HOH . O 8 HOH A 8 508 527 HOH HOH . O 8 HOH A 9 509 514 HOH HOH . O 8 HOH A 10 510 518 HOH HOH . O 8 HOH A 11 511 522 HOH HOH . O 8 HOH A 12 512 515 HOH HOH . O 8 HOH A 13 513 512 HOH HOH . O 8 HOH A 14 514 517 HOH HOH . O 8 HOH A 15 515 507 HOH HOH . O 8 HOH A 16 516 519 HOH HOH . O 8 HOH A 17 517 529 HOH HOH . O 8 HOH A 18 518 508 HOH HOH . O 8 HOH A 19 519 523 HOH HOH . O 8 HOH A 20 520 526 HOH HOH . O 8 HOH A 21 521 513 HOH HOH . O 8 HOH A 22 522 516 HOH HOH . O 8 HOH A 23 523 504 HOH HOH . O 8 HOH A 24 524 524 HOH HOH . O 8 HOH A 25 525 521 HOH HOH . O 8 HOH A 26 526 505 HOH HOH . O 8 HOH A 27 527 520 HOH HOH . O 8 HOH A 28 528 509 HOH HOH . O 8 HOH A 29 529 501 HOH HOH . P 8 HOH B 1 501 511 HOH HOH . P 8 HOH B 2 502 525 HOH HOH . P 8 HOH B 3 503 521 HOH HOH . P 8 HOH B 4 504 500 HOH HOH . P 8 HOH B 5 505 510 HOH HOH . P 8 HOH B 6 506 522 HOH HOH . P 8 HOH B 7 507 515 HOH HOH . P 8 HOH B 8 508 508 HOH HOH . P 8 HOH B 9 509 523 HOH HOH . P 8 HOH B 10 510 519 HOH HOH . P 8 HOH B 11 511 518 HOH HOH . P 8 HOH B 12 512 506 HOH HOH . P 8 HOH B 13 513 512 HOH HOH . P 8 HOH B 14 514 516 HOH HOH . P 8 HOH B 15 515 517 HOH HOH . P 8 HOH B 16 516 503 HOH HOH . P 8 HOH B 17 517 513 HOH HOH . P 8 HOH B 18 518 505 HOH HOH . P 8 HOH B 19 519 502 HOH HOH . P 8 HOH B 20 520 529 HOH HOH . P 8 HOH B 21 521 507 HOH HOH . P 8 HOH B 22 522 504 HOH HOH . P 8 HOH B 23 523 520 HOH HOH . P 8 HOH B 24 524 524 HOH HOH . P 8 HOH B 25 525 527 HOH HOH . P 8 HOH B 26 526 526 HOH HOH . P 8 HOH B 27 527 528 HOH HOH . P 8 HOH B 28 528 514 HOH HOH . P 8 HOH B 29 529 509 HOH HOH . P 8 HOH B 30 530 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . M 7 18.034 56.883 27.753 1 131.09 ? O12 PC1 406 B 1 HETATM 2 P P PC1 . . . M 7 17.296 56.227 26.5 1 131.01 ? P PC1 406 B 1 HETATM 3 O O14 PC1 . . . M 7 16.025 57.049 26.057 1 131.54 ? O14 PC1 406 B 1 HETATM 4 O O13 PC1 . . . M 7 16.98 54.764 26.914 1 130.05 ? O13 PC1 406 B 1 HETATM 5 C C11 PC1 . . . M 7 16.129 54.637 28.092 1 128.63 ? C11 PC1 406 B 1 HETATM 6 C C12 PC1 . . . M 7 15.889 53.143 28.411 1 126.9 ? C12 PC1 406 B 1 HETATM 7 O O11 PC1 . . . M 7 18.215 56.075 25.231 1 127.22 ? O11 PC1 406 B 1 HETATM 8 C C1 PC1 . . . M 7 19.572 56.534 25.382 1 118.96 ? C1 PC1 406 B 1 HETATM 9 C C2 PC1 . . . M 7 20.005 57.594 24.342 1 111.85 ? C2 PC1 406 B 1 HETATM 10 O O21 PC1 . . . M 7 19.827 57.033 22.964 1 108.88 ? O21 PC1 406 B 1 HETATM 11 C C21 PC1 . . . M 7 18.683 57.484 22.018 1 103.54 ? C21 PC1 406 B 1 HETATM 12 O O22 PC1 . . . M 7 17.807 58.339 22.293 1 102.99 ? O22 PC1 406 B 1 HETATM 13 C C22 PC1 . . . M 7 18.603 56.866 20.685 1 98.88 ? C22 PC1 406 B 1 HETATM 14 C C23 PC1 . . . M 7 19.507 57.576 19.639 1 92.44 ? C23 PC1 406 B 1 HETATM 15 C C24 PC1 . . . M 7 18.71 58.08 18.439 1 88.14 ? C24 PC1 406 B 1 HETATM 16 C C25 PC1 . . . M 7 19.209 57.51 17.088 1 83.51 ? C25 PC1 406 B 1 HETATM 17 C C26 PC1 . . . M 7 20.224 58.393 16.411 1 80.48 ? C26 PC1 406 B 1 HETATM 18 C C27 PC1 . . . M 7 20.66 57.732 15.057 1 79.1 ? C27 PC1 406 B 1 HETATM 19 C C28 PC1 . . . M 7 21.655 58.527 14.335 1 78.13 ? C28 PC1 406 B 1 HETATM 20 C C29 PC1 . . . M 7 21.137 58.769 12.98 1 76.74 ? C29 PC1 406 B 1 HETATM 21 C C2A PC1 . . . M 7 22.115 59.586 12.144 1 76.34 ? C2A PC1 406 B 1 HETATM 22 C C2B PC1 . . . M 7 21.572 59.822 10.781 1 75.44 ? C2B PC1 406 B 1 HETATM 23 C C2C PC1 . . . M 7 22.52 60.647 9.869 1 73.9 ? C2C PC1 406 B 1 HETATM 24 C C2D PC1 . . . M 7 21.915 60.871 8.477 1 72.18 ? C2D PC1 406 B 1 HETATM 25 C C2E PC1 . . . M 7 22.977 60.652 7.373 1 71.75 ? C2E PC1 406 B 1 HETATM 26 C C2F PC1 . . . M 7 23.031 61.825 6.403 1 72.13 ? C2F PC1 406 B 1 HETATM 27 C C3 PC1 . . . M 7 21.458 57.995 24.602 1 107.51 ? C3 PC1 406 B 1 HETATM 28 O O31 PC1 . . . M 7 22.284 56.782 24.5 1 100.92 ? O31 PC1 406 B 1 HETATM 29 C C31 PC1 . . . M 7 23.675 57.075 24.234 1 97.05 ? C31 PC1 406 B 1 HETATM 30 O O32 PC1 . . . M 7 24.348 57.757 25.003 1 96.6 ? O32 PC1 406 B 1 HETATM 31 C C32 PC1 . . . M 7 24.259 56.492 22.961 1 92.98 ? C32 PC1 406 B 1 HETATM 32 C C33 PC1 . . . M 7 23.512 56.709 21.631 1 89.76 ? C33 PC1 406 B 1 HETATM 33 C C34 PC1 . . . M 7 24.264 56.06 20.553 1 86.68 ? C34 PC1 406 B 1 HETATM 34 C C35 PC1 . . . M 7 24.178 56.877 19.269 1 82.63 ? C35 PC1 406 B 1 HETATM 35 C C36 PC1 . . . M 7 24.917 56.224 18.245 1 80.13 ? C36 PC1 406 B 1 HETATM 36 C C37 PC1 . . . M 7 24.799 57.083 16.961 1 79.37 ? C37 PC1 406 B 1 HETATM 37 C C38 PC1 . . . M 7 25.22 56.346 15.769 1 76.55 ? C38 PC1 406 B 1 HETATM 38 C C39 PC1 . . . M 7 25.631 57.303 14.649 1 75.02 ? C39 PC1 406 B 1 HETATM 39 C C3A PC1 . . . M 7 26.061 56.552 13.425 1 75.06 ? C3A PC1 406 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #