data_4WW5 # _model_server_result.job_id XrtJhVzyhEk1_YuNywXAXA _model_server_result.datetime_utc '2024-11-08 13:47:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ww5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4WW5 # _exptl.entry_id 4WW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WW5 _cell.length_a 112.93 _cell.length_b 112.93 _cell.length_c 87.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details DIMERIC _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id J _struct_conn.ptnr1_label_atom_id O1 _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.46 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 4WW5 _atom_sites.fract_transf_matrix[1][1] 0.008855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 301 260 ANP ANP . D 4 ACT A 1 302 170 ACT ACT . E 4 ACT A 1 303 172 ACT ACT . F 5 SO4 A 1 304 178 SO4 SO4 . G 5 SO4 A 1 305 180 SO4 SO4 . H 6 GOL A 1 306 185 GOL GOL . I 4 ACT B 1 201 174 ACT ACT . J 5 SO4 B 1 202 176 SO4 SO4 . K 5 SO4 B 1 203 156 SO4 SO4 . L 5 SO4 B 1 204 182 SO4 SO4 . M 7 HOH A 1 401 120 HOH HOH . M 7 HOH A 2 402 90 HOH HOH . M 7 HOH A 3 403 33 HOH HOH . M 7 HOH A 4 404 118 HOH HOH . M 7 HOH A 5 405 80 HOH HOH . M 7 HOH A 6 406 116 HOH HOH . M 7 HOH A 7 407 44 HOH HOH . M 7 HOH A 8 408 151 HOH HOH . M 7 HOH A 9 409 24 HOH HOH . M 7 HOH A 10 410 103 HOH HOH . M 7 HOH A 11 411 56 HOH HOH . M 7 HOH A 12 412 104 HOH HOH . M 7 HOH A 13 413 119 HOH HOH . M 7 HOH A 14 414 139 HOH HOH . M 7 HOH A 15 415 152 HOH HOH . M 7 HOH A 16 416 2 HOH HOH . M 7 HOH A 17 417 3 HOH HOH . M 7 HOH A 18 418 7 HOH HOH . M 7 HOH A 19 419 15 HOH HOH . M 7 HOH A 20 420 18 HOH HOH . M 7 HOH A 21 421 21 HOH HOH . M 7 HOH A 22 422 22 HOH HOH . M 7 HOH A 23 423 25 HOH HOH . M 7 HOH A 24 424 28 HOH HOH . M 7 HOH A 25 425 30 HOH HOH . M 7 HOH A 26 426 31 HOH HOH . M 7 HOH A 27 427 38 HOH HOH . M 7 HOH A 28 428 39 HOH HOH . M 7 HOH A 29 429 40 HOH HOH . M 7 HOH A 30 430 41 HOH HOH . M 7 HOH A 31 431 42 HOH HOH . M 7 HOH A 32 432 50 HOH HOH . M 7 HOH A 33 433 51 HOH HOH . M 7 HOH A 34 434 55 HOH HOH . M 7 HOH A 35 435 57 HOH HOH . M 7 HOH A 36 436 59 HOH HOH . M 7 HOH A 37 437 61 HOH HOH . M 7 HOH A 38 438 65 HOH HOH . M 7 HOH A 39 439 66 HOH HOH . M 7 HOH A 40 440 67 HOH HOH . M 7 HOH A 41 441 69 HOH HOH . M 7 HOH A 42 442 70 HOH HOH . M 7 HOH A 43 443 74 HOH HOH . M 7 HOH A 44 444 75 HOH HOH . M 7 HOH A 45 445 77 HOH HOH . M 7 HOH A 46 446 81 HOH HOH . M 7 HOH A 47 447 82 HOH HOH . M 7 HOH A 48 448 83 HOH HOH . M 7 HOH A 49 449 86 HOH HOH . M 7 HOH A 50 450 88 HOH HOH . M 7 HOH A 51 451 92 HOH HOH . M 7 HOH A 52 452 93 HOH HOH . M 7 HOH A 53 453 94 HOH HOH . M 7 HOH A 54 454 97 HOH HOH . M 7 HOH A 55 455 98 HOH HOH . M 7 HOH A 56 456 101 HOH HOH . M 7 HOH A 57 457 105 HOH HOH . M 7 HOH A 58 458 106 HOH HOH . M 7 HOH A 59 459 108 HOH HOH . M 7 HOH A 60 460 113 HOH HOH . M 7 HOH A 61 461 114 HOH HOH . M 7 HOH A 62 462 115 HOH HOH . M 7 HOH A 63 463 117 HOH HOH . M 7 HOH A 64 464 121 HOH HOH . M 7 HOH A 65 465 122 HOH HOH . M 7 HOH A 66 466 124 HOH HOH . M 7 HOH A 67 467 125 HOH HOH . M 7 HOH A 68 468 127 HOH HOH . M 7 HOH A 69 469 129 HOH HOH . M 7 HOH A 70 470 130 HOH HOH . M 7 HOH A 71 471 131 HOH HOH . M 7 HOH A 72 472 132 HOH HOH . M 7 HOH A 73 473 135 HOH HOH . M 7 HOH A 74 474 137 HOH HOH . M 7 HOH A 75 475 140 HOH HOH . M 7 HOH A 76 476 141 HOH HOH . M 7 HOH A 77 477 145 HOH HOH . M 7 HOH A 78 478 148 HOH HOH . M 7 HOH A 79 479 149 HOH HOH . M 7 HOH A 80 480 150 HOH HOH . M 7 HOH A 81 481 153 HOH HOH . M 7 HOH A 82 482 158 HOH HOH . M 7 HOH A 83 483 163 HOH HOH . M 7 HOH A 84 484 164 HOH HOH . M 7 HOH A 85 485 165 HOH HOH . M 7 HOH A 86 486 166 HOH HOH . M 7 HOH A 87 487 168 HOH HOH . N 7 HOH B 1 301 146 HOH HOH . N 7 HOH B 2 302 161 HOH HOH . N 7 HOH B 3 303 111 HOH HOH . N 7 HOH B 4 304 147 HOH HOH . N 7 HOH B 5 305 157 HOH HOH . N 7 HOH B 6 306 156 HOH HOH . N 7 HOH B 7 307 17 HOH HOH . N 7 HOH B 8 308 79 HOH HOH . N 7 HOH B 9 309 68 HOH HOH . N 7 HOH B 10 310 12 HOH HOH . N 7 HOH B 11 311 64 HOH HOH . N 7 HOH B 12 312 11 HOH HOH . N 7 HOH B 13 313 10 HOH HOH . N 7 HOH B 14 314 23 HOH HOH . N 7 HOH B 15 315 47 HOH HOH . N 7 HOH B 16 316 60 HOH HOH . N 7 HOH B 17 317 9 HOH HOH . N 7 HOH B 18 318 16 HOH HOH . N 7 HOH B 19 319 155 HOH HOH . N 7 HOH B 20 320 49 HOH HOH . N 7 HOH B 21 321 58 HOH HOH . N 7 HOH B 22 322 37 HOH HOH . N 7 HOH B 23 323 85 HOH HOH . N 7 HOH B 24 324 154 HOH HOH . N 7 HOH B 25 325 1 HOH HOH . N 7 HOH B 26 326 4 HOH HOH . N 7 HOH B 27 327 5 HOH HOH . N 7 HOH B 28 328 6 HOH HOH . N 7 HOH B 29 329 8 HOH HOH . N 7 HOH B 30 330 13 HOH HOH . N 7 HOH B 31 331 14 HOH HOH . N 7 HOH B 32 332 19 HOH HOH . N 7 HOH B 33 333 20 HOH HOH . N 7 HOH B 34 334 26 HOH HOH . N 7 HOH B 35 335 27 HOH HOH . N 7 HOH B 36 336 29 HOH HOH . N 7 HOH B 37 337 32 HOH HOH . N 7 HOH B 38 338 34 HOH HOH . N 7 HOH B 39 339 35 HOH HOH . N 7 HOH B 40 340 36 HOH HOH . N 7 HOH B 41 341 43 HOH HOH . N 7 HOH B 42 342 45 HOH HOH . N 7 HOH B 43 343 46 HOH HOH . N 7 HOH B 44 344 52 HOH HOH . N 7 HOH B 45 345 53 HOH HOH . N 7 HOH B 46 346 54 HOH HOH . N 7 HOH B 47 347 62 HOH HOH . N 7 HOH B 48 348 63 HOH HOH . N 7 HOH B 49 349 71 HOH HOH . N 7 HOH B 50 350 72 HOH HOH . N 7 HOH B 51 351 73 HOH HOH . N 7 HOH B 52 352 76 HOH HOH . N 7 HOH B 53 353 78 HOH HOH . N 7 HOH B 54 354 87 HOH HOH . N 7 HOH B 55 355 89 HOH HOH . N 7 HOH B 56 356 91 HOH HOH . N 7 HOH B 57 357 95 HOH HOH . N 7 HOH B 58 358 96 HOH HOH . N 7 HOH B 59 359 99 HOH HOH . N 7 HOH B 60 360 100 HOH HOH . N 7 HOH B 61 361 102 HOH HOH . N 7 HOH B 62 362 107 HOH HOH . N 7 HOH B 63 363 109 HOH HOH . N 7 HOH B 64 364 110 HOH HOH . N 7 HOH B 65 365 112 HOH HOH . N 7 HOH B 66 366 123 HOH HOH . N 7 HOH B 67 367 126 HOH HOH . N 7 HOH B 68 368 128 HOH HOH . N 7 HOH B 69 369 133 HOH HOH . N 7 HOH B 70 370 134 HOH HOH . N 7 HOH B 71 371 136 HOH HOH . N 7 HOH B 72 372 138 HOH HOH . N 7 HOH B 73 373 142 HOH HOH . N 7 HOH B 74 374 143 HOH HOH . N 7 HOH B 75 375 144 HOH HOH . N 7 HOH B 76 376 159 HOH HOH . N 7 HOH B 77 377 160 HOH HOH . N 7 HOH B 78 378 162 HOH HOH . N 7 HOH B 79 379 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . C 3 -24.622 -10.68 -20.996 0.59 46.74 ? PB ANP 301 A 1 HETATM 2 O O1B ANP . . . C 3 -25.069 -10.291 -22.524 1 40.27 ? O1B ANP 301 A 1 HETATM 3 O O2B ANP . . . C 3 -25.171 -9.516 -20.291 0.86 37.42 ? O2B ANP 301 A 1 HETATM 4 N N3B ANP . . . C 3 -25.442 -11.796 -20.285 1 52.63 ? N3B ANP 301 A 1 HETATM 5 P PA ANP . . . C 3 -22.263 -11.959 -19.912 0.35 55.98 ? PA ANP 301 A 1 HETATM 6 O O1A ANP . . . C 3 -21.69 -12.697 -21.038 0.84 52.98 ? O1A ANP 301 A 1 HETATM 7 O O2A ANP . . . C 3 -23.331 -12.888 -19.095 0.77 50.47 ? O2A ANP 301 A 1 HETATM 8 O O3A ANP . . . C 3 -23.033 -10.61 -20.52 0.35 49.11 ? O3A ANP 301 A 1 HETATM 9 O O5' ANP . . . C 3 -21.049 -11.523 -18.877 1 53.93 ? O5' ANP 301 A 1 HETATM 10 C C5' ANP . . . C 3 -20.308 -12.543 -18.217 1 57.06 ? C5' ANP 301 A 1 HETATM 11 C C4' ANP . . . C 3 -19.326 -11.91 -17.258 1 53.85 ? C4' ANP 301 A 1 HETATM 12 O O4' ANP . . . C 3 -18.647 -10.785 -17.692 1 59.65 ? O4' ANP 301 A 1 HETATM 13 C C3' ANP . . . C 3 -19.057 -12.056 -15.888 1 52.54 ? C3' ANP 301 A 1 HETATM 14 O O3' ANP . . . C 3 -19.53 -12.973 -14.954 1 60.88 ? O3' ANP 301 A 1 HETATM 15 C C2' ANP . . . C 3 -18.209 -11.018 -15.504 1 53.73 ? C2' ANP 301 A 1 HETATM 16 O O2' ANP . . . C 3 -17.725 -10.748 -14.23 1 50.82 ? O2' ANP 301 A 1 HETATM 17 C C1' ANP . . . C 3 -17.95 -10.269 -16.638 1 51.6 ? C1' ANP 301 A 1 HETATM 18 N N9 ANP . . . C 3 -17.652 -8.912 -16.767 1 45.97 ? N9 ANP 301 A 1 HETATM 19 C C8 ANP . . . C 3 -18.729 -8.342 -17.462 1 44.17 ? C8 ANP 301 A 1 HETATM 20 N N7 ANP . . . C 3 -18.629 -7.063 -17.423 1 45.17 ? N7 ANP 301 A 1 HETATM 21 C C5 ANP . . . C 3 -17.621 -6.798 -16.524 1 40.04 ? C5 ANP 301 A 1 HETATM 22 C C6 ANP . . . C 3 -17.144 -5.581 -16.146 1 36.35 ? C6 ANP 301 A 1 HETATM 23 N N6 ANP . . . C 3 -17.792 -4.416 -16.699 1 30.61 ? N6 ANP 301 A 1 HETATM 24 N N1 ANP . . . C 3 -16.129 -5.492 -15.218 1 35.29 ? N1 ANP 301 A 1 HETATM 25 C C2 ANP . . . C 3 -15.578 -6.665 -14.665 1 35.67 ? C2 ANP 301 A 1 HETATM 26 N N3 ANP . . . C 3 -16.065 -7.87 -15.054 1 40.8 ? N3 ANP 301 A 1 HETATM 27 C C4 ANP . . . C 3 -17.123 -7.961 -15.999 1 42.11 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #