data_4WW7 # _model_server_result.job_id B1BR-M5XBnk4_BVVpT-DOQ _model_server_result.datetime_utc '2024-11-26 23:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ww7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4WW7 # _exptl.entry_id 4WW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WW7 _cell.length_a 113.89 _cell.length_b 113.89 _cell.length_c 87.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 19 n n P O2P AMP sing 20 n n P O3P AMP sing 21 n n P O5' AMP sing 22 n n O2P HOP2 AMP sing 23 n n O3P HOP3 AMP sing 24 n n O5' C5' AMP sing 25 n n C5' C4' AMP sing 26 n n C5' "H5'1" AMP sing 27 n n C5' "H5'2" AMP sing 28 n n C4' O4' AMP sing 29 n n C4' C3' AMP sing 30 n n C4' H4' AMP sing 31 n n O4' C1' AMP sing 32 n n C3' O3' AMP sing 33 n n C3' C2' AMP sing 34 n n C3' H3' AMP sing 35 n n O3' HO3' AMP sing 36 n n C2' O2' AMP sing 37 n n C2' C1' AMP sing 38 n n C2' H2' AMP sing 39 n n O2' HO2' AMP sing 40 n n C1' N9 AMP sing 41 n n C1' H1' AMP sing 42 n n N9 C8 AMP sing 43 n y N9 C4 AMP sing 44 n y C8 N7 AMP doub 45 n y C8 H8 AMP sing 46 n n N7 C5 AMP sing 47 n y C5 C6 AMP sing 48 n y C5 C4 AMP doub 49 n y C6 N6 AMP sing 50 n n C6 N1 AMP doub 51 n y N6 HN61 AMP sing 52 n n N6 HN62 AMP sing 53 n n N1 C2 AMP sing 54 n y C2 N3 AMP doub 55 n y C2 H2 AMP sing 56 n n N3 C4 AMP sing 57 n y # _atom_sites.entry_id 4WW7 _atom_sites.fract_transf_matrix[1][1] 0.00878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AMP A 1 301 260 AMP AMP . D 4 ACT A 1 302 220 ACT ACT . E 4 ACT A 1 303 222 ACT ACT . F 4 ACT A 1 304 224 ACT ACT . G 4 ACT A 1 305 226 ACT ACT . H 5 SO4 A 1 306 228 SO4 SO4 . I 5 SO4 A 1 307 232 SO4 SO4 . J 5 SO4 B 1 201 230 SO4 SO4 . K 6 HOH A 1 401 134 HOH HOH . K 6 HOH A 2 402 195 HOH HOH . K 6 HOH A 3 403 186 HOH HOH . K 6 HOH A 4 404 5 HOH HOH . K 6 HOH A 5 405 174 HOH HOH . K 6 HOH A 6 406 97 HOH HOH . K 6 HOH A 7 407 111 HOH HOH . K 6 HOH A 8 408 57 HOH HOH . K 6 HOH A 9 409 44 HOH HOH . K 6 HOH A 10 410 1 HOH HOH . K 6 HOH A 11 411 67 HOH HOH . K 6 HOH A 12 412 24 HOH HOH . K 6 HOH A 13 413 6 HOH HOH . K 6 HOH A 14 414 194 HOH HOH . K 6 HOH A 15 415 108 HOH HOH . K 6 HOH A 16 416 148 HOH HOH . K 6 HOH A 17 417 28 HOH HOH . K 6 HOH A 18 418 193 HOH HOH . K 6 HOH A 19 419 172 HOH HOH . K 6 HOH A 20 420 4 HOH HOH . K 6 HOH A 21 421 7 HOH HOH . K 6 HOH A 22 422 9 HOH HOH . K 6 HOH A 23 423 10 HOH HOH . K 6 HOH A 24 424 12 HOH HOH . K 6 HOH A 25 425 14 HOH HOH . K 6 HOH A 26 426 17 HOH HOH . K 6 HOH A 27 427 18 HOH HOH . K 6 HOH A 28 428 19 HOH HOH . K 6 HOH A 29 429 21 HOH HOH . K 6 HOH A 30 430 26 HOH HOH . K 6 HOH A 31 431 31 HOH HOH . K 6 HOH A 32 432 32 HOH HOH . K 6 HOH A 33 433 37 HOH HOH . K 6 HOH A 34 434 39 HOH HOH . K 6 HOH A 35 435 40 HOH HOH . K 6 HOH A 36 436 41 HOH HOH . K 6 HOH A 37 437 42 HOH HOH . K 6 HOH A 38 438 43 HOH HOH . K 6 HOH A 39 439 45 HOH HOH . K 6 HOH A 40 440 47 HOH HOH . K 6 HOH A 41 441 51 HOH HOH . K 6 HOH A 42 442 54 HOH HOH . K 6 HOH A 43 443 56 HOH HOH . K 6 HOH A 44 444 59 HOH HOH . K 6 HOH A 45 445 60 HOH HOH . K 6 HOH A 46 446 61 HOH HOH . K 6 HOH A 47 447 69 HOH HOH . K 6 HOH A 48 448 70 HOH HOH . K 6 HOH A 49 449 72 HOH HOH . K 6 HOH A 50 450 74 HOH HOH . K 6 HOH A 51 451 81 HOH HOH . K 6 HOH A 52 452 83 HOH HOH . K 6 HOH A 53 453 85 HOH HOH . K 6 HOH A 54 454 86 HOH HOH . K 6 HOH A 55 455 88 HOH HOH . K 6 HOH A 56 456 91 HOH HOH . K 6 HOH A 57 457 93 HOH HOH . K 6 HOH A 58 458 94 HOH HOH . K 6 HOH A 59 459 98 HOH HOH . K 6 HOH A 60 460 99 HOH HOH . K 6 HOH A 61 461 101 HOH HOH . K 6 HOH A 62 462 103 HOH HOH . K 6 HOH A 63 463 104 HOH HOH . K 6 HOH A 64 464 105 HOH HOH . K 6 HOH A 65 465 109 HOH HOH . K 6 HOH A 66 466 110 HOH HOH . K 6 HOH A 67 467 113 HOH HOH . K 6 HOH A 68 468 115 HOH HOH . K 6 HOH A 69 469 116 HOH HOH . K 6 HOH A 70 470 120 HOH HOH . K 6 HOH A 71 471 122 HOH HOH . K 6 HOH A 72 472 124 HOH HOH . K 6 HOH A 73 473 127 HOH HOH . K 6 HOH A 74 474 131 HOH HOH . K 6 HOH A 75 475 133 HOH HOH . K 6 HOH A 76 476 135 HOH HOH . K 6 HOH A 77 477 136 HOH HOH . K 6 HOH A 78 478 137 HOH HOH . K 6 HOH A 79 479 138 HOH HOH . K 6 HOH A 80 480 140 HOH HOH . K 6 HOH A 81 481 141 HOH HOH . K 6 HOH A 82 482 142 HOH HOH . K 6 HOH A 83 483 143 HOH HOH . K 6 HOH A 84 484 145 HOH HOH . K 6 HOH A 85 485 150 HOH HOH . K 6 HOH A 86 486 151 HOH HOH . K 6 HOH A 87 487 156 HOH HOH . K 6 HOH A 88 488 161 HOH HOH . K 6 HOH A 89 489 163 HOH HOH . K 6 HOH A 90 490 167 HOH HOH . K 6 HOH A 91 491 170 HOH HOH . K 6 HOH A 92 492 171 HOH HOH . K 6 HOH A 93 493 176 HOH HOH . K 6 HOH A 94 494 179 HOH HOH . K 6 HOH A 95 495 180 HOH HOH . K 6 HOH A 96 496 181 HOH HOH . K 6 HOH A 97 497 184 HOH HOH . K 6 HOH A 98 498 188 HOH HOH . K 6 HOH A 99 499 189 HOH HOH . K 6 HOH A 100 500 192 HOH HOH . K 6 HOH A 101 501 196 HOH HOH . K 6 HOH A 102 502 197 HOH HOH . K 6 HOH A 103 503 198 HOH HOH . K 6 HOH A 104 504 199 HOH HOH . K 6 HOH A 105 505 200 HOH HOH . K 6 HOH A 106 506 202 HOH HOH . K 6 HOH A 107 507 203 HOH HOH . K 6 HOH A 108 508 205 HOH HOH . K 6 HOH A 109 509 206 HOH HOH . K 6 HOH A 110 510 208 HOH HOH . K 6 HOH A 111 511 209 HOH HOH . K 6 HOH A 112 512 210 HOH HOH . K 6 HOH A 113 513 211 HOH HOH . L 6 HOH B 1 301 129 HOH HOH . L 6 HOH B 2 302 191 HOH HOH . L 6 HOH B 3 303 107 HOH HOH . L 6 HOH B 4 304 175 HOH HOH . L 6 HOH B 5 305 80 HOH HOH . L 6 HOH B 6 306 149 HOH HOH . L 6 HOH B 7 307 38 HOH HOH . L 6 HOH B 8 308 79 HOH HOH . L 6 HOH B 9 309 33 HOH HOH . L 6 HOH B 10 310 36 HOH HOH . L 6 HOH B 11 311 118 HOH HOH . L 6 HOH B 12 312 178 HOH HOH . L 6 HOH B 13 313 125 HOH HOH . L 6 HOH B 14 314 155 HOH HOH . L 6 HOH B 15 315 8 HOH HOH . L 6 HOH B 16 316 49 HOH HOH . L 6 HOH B 17 317 20 HOH HOH . L 6 HOH B 18 318 117 HOH HOH . L 6 HOH B 19 319 73 HOH HOH . L 6 HOH B 20 320 165 HOH HOH . L 6 HOH B 21 321 34 HOH HOH . L 6 HOH B 22 322 46 HOH HOH . L 6 HOH B 23 323 112 HOH HOH . L 6 HOH B 24 324 48 HOH HOH . L 6 HOH B 25 325 166 HOH HOH . L 6 HOH B 26 326 132 HOH HOH . L 6 HOH B 27 327 153 HOH HOH . L 6 HOH B 28 328 2 HOH HOH . L 6 HOH B 29 329 3 HOH HOH . L 6 HOH B 30 330 11 HOH HOH . L 6 HOH B 31 331 13 HOH HOH . L 6 HOH B 32 332 15 HOH HOH . L 6 HOH B 33 333 16 HOH HOH . L 6 HOH B 34 334 22 HOH HOH . L 6 HOH B 35 335 23 HOH HOH . L 6 HOH B 36 336 25 HOH HOH . L 6 HOH B 37 337 27 HOH HOH . L 6 HOH B 38 338 29 HOH HOH . L 6 HOH B 39 339 30 HOH HOH . L 6 HOH B 40 340 35 HOH HOH . L 6 HOH B 41 341 50 HOH HOH . L 6 HOH B 42 342 52 HOH HOH . L 6 HOH B 43 343 53 HOH HOH . L 6 HOH B 44 344 55 HOH HOH . L 6 HOH B 45 345 58 HOH HOH . L 6 HOH B 46 346 62 HOH HOH . L 6 HOH B 47 347 63 HOH HOH . L 6 HOH B 48 348 64 HOH HOH . L 6 HOH B 49 349 65 HOH HOH . L 6 HOH B 50 350 66 HOH HOH . L 6 HOH B 51 351 68 HOH HOH . L 6 HOH B 52 352 71 HOH HOH . L 6 HOH B 53 353 75 HOH HOH . L 6 HOH B 54 354 76 HOH HOH . L 6 HOH B 55 355 77 HOH HOH . L 6 HOH B 56 356 78 HOH HOH . L 6 HOH B 57 357 82 HOH HOH . L 6 HOH B 58 358 84 HOH HOH . L 6 HOH B 59 359 87 HOH HOH . L 6 HOH B 60 360 89 HOH HOH . L 6 HOH B 61 361 90 HOH HOH . L 6 HOH B 62 362 92 HOH HOH . L 6 HOH B 63 363 95 HOH HOH . L 6 HOH B 64 364 96 HOH HOH . L 6 HOH B 65 365 100 HOH HOH . L 6 HOH B 66 366 102 HOH HOH . L 6 HOH B 67 367 106 HOH HOH . L 6 HOH B 68 368 114 HOH HOH . L 6 HOH B 69 369 119 HOH HOH . L 6 HOH B 70 370 121 HOH HOH . L 6 HOH B 71 371 123 HOH HOH . L 6 HOH B 72 372 126 HOH HOH . L 6 HOH B 73 373 128 HOH HOH . L 6 HOH B 74 374 130 HOH HOH . L 6 HOH B 75 375 139 HOH HOH . L 6 HOH B 76 376 144 HOH HOH . L 6 HOH B 77 377 146 HOH HOH . L 6 HOH B 78 378 147 HOH HOH . L 6 HOH B 79 379 152 HOH HOH . L 6 HOH B 80 380 154 HOH HOH . L 6 HOH B 81 381 157 HOH HOH . L 6 HOH B 82 382 158 HOH HOH . L 6 HOH B 83 383 159 HOH HOH . L 6 HOH B 84 384 160 HOH HOH . L 6 HOH B 85 385 162 HOH HOH . L 6 HOH B 86 386 164 HOH HOH . L 6 HOH B 87 387 168 HOH HOH . L 6 HOH B 88 388 169 HOH HOH . L 6 HOH B 89 389 173 HOH HOH . L 6 HOH B 90 390 177 HOH HOH . L 6 HOH B 91 391 182 HOH HOH . L 6 HOH B 92 392 183 HOH HOH . L 6 HOH B 93 393 185 HOH HOH . L 6 HOH B 94 394 187 HOH HOH . L 6 HOH B 95 395 190 HOH HOH . L 6 HOH B 96 396 201 HOH HOH . L 6 HOH B 97 397 204 HOH HOH . L 6 HOH B 98 398 207 HOH HOH . L 6 HOH B 99 399 212 HOH HOH . L 6 HOH B 100 400 213 HOH HOH . L 6 HOH B 101 401 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 -21.511 -11.167 2.942 1 29.91 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . C 3 -21.316 -11.811 1.577 1 31.17 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . C 3 -21.829 -9.694 2.933 1 29.54 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . C 3 -22.425 -11.996 3.829 1 33.15 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . C 3 -20.085 -11.246 3.682 1 28.37 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . C 3 -19.448 -12.486 4.013 1 27.23 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . C 3 -18.392 -12.23 5.074 1 28.29 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . C 3 -17.417 -11.27 4.607 1 26.19 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . C 3 -18.984 -11.584 6.323 1 29.41 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . C 3 -19.535 -12.524 7.26 1 29.2 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . C 3 -17.817 -10.838 6.909 1 25.65 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . C 3 -17 -11.725 7.684 1 31.32 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . C 3 -17.019 -10.423 5.685 1 24.36 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . C 3 -17.42 -9.04 5.369 1 25.61 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . C 3 -18.358 -8.664 4.491 1 24.95 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . C 3 -18.476 -7.304 4.448 1 24.97 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . C 3 -17.584 -6.817 5.32 1 23.7 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . C 3 -17.175 -5.48 5.78 1 21.95 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . C 3 -17.758 -4.377 5.258 1 22.56 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . C 3 -16.21 -5.401 6.712 1 22.64 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . C 3 -15.606 -6.49 7.228 1 24.52 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . C 3 -15.933 -7.745 6.854 1 23.81 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . C 3 -16.883 -7.956 5.923 1 23.11 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #