data_4WWK
#
_model_server_result.job_id            tWSXYJBHNnrbfOaXg8g3Tg 
_model_server_result.datetime_utc      '2024-12-03 12:57:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    4WWK 
#
_exptl.entry_id    4WWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              828.253 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WWK 
_cell.length_a            56.38 
_cell.length_b            76.07 
_cell.length_c            255.72 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 90 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 24 B CYS 23 1_555 B SG CYS 92 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 103 C CYS 102 1_555 C SG CYS 167 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 45 D CYS 25 1_555 D SG CYS 100 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
covale ? covale1 C ND2 ASN 21 C ASN 20 1_555 E C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 C ND2 ASN 43 C ASN 42 1_555 F C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C48 H93 N O9' 
_chem_comp.formula_weight    828.253 
_chem_comp.id                JLS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PBS-44 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 JLS sing 173 n n 
C17 C16 JLS sing 174 n n 
C16 C15 JLS sing 175 n n 
C14 C15 JLS sing 176 n n 
C14 C13 JLS sing 177 n n 
C13 C12 JLS sing 178 n n 
C12 C11 JLS sing 179 n n 
C11 C10 JLS sing 180 n n 
C10 C9 JLS sing 181 n n 
C9 C8 JLS sing 182 n n 
C8 C7 JLS sing 183 n n 
C7 C6 JLS sing 184 n n 
C5 C6 JLS sing 185 n n 
C5 C4 JLS sing 186 n n 
C4 O4 JLS sing 187 n n 
C4 C3 JLS sing 188 n n 
O3 C3 JLS sing 189 n n 
C3 C2 JLS sing 190 n n 
O2A C2A JLS sing 191 n n 
CAK CAJ JLS sing 192 n n 
CAK CAL JLS sing 193 n n 
C2 N2 JLS sing 194 n n 
C2 C1 JLS sing 195 n n 
CAI CAJ JLS sing 196 n n 
CAI CAH JLS sing 197 n n 
O3A C3A JLS sing 198 n n 
N2 CAA JLS sing 199 n n 
C2A C3A JLS sing 200 n n 
C2A C1A JLS sing 201 n n 
O1A C1 JLS sing 202 n n 
O1A C1A JLS sing 203 n n 
CAF CAG JLS sing 204 n n 
CAF CAE JLS sing 205 n n 
CAC CAD JLS sing 206 n n 
CAC CAB JLS sing 207 n n 
CAD CAE JLS sing 208 n n 
CAL CAM JLS sing 209 n n 
C3A C4A JLS sing 210 n n 
C1A O5A JLS sing 211 n n 
CAA CAB JLS sing 212 n n 
CAA OAA JLS doub 213 n n 
CAH CAG JLS sing 214 n n 
CAM CAN JLS sing 215 n n 
C4A O4A JLS sing 216 n n 
C4A C5M JLS sing 217 n n 
O5A C5M JLS sing 218 n n 
CAN CAO JLS sing 219 n n 
C5M C6A JLS sing 220 n n 
CAX CAW JLS sing 221 n n 
CAO CAP JLS doub 222 z n 
CAW CAV JLS sing 223 n n 
C6A O6A JLS sing 224 n n 
CAP CAQ JLS sing 225 n n 
CAV CAU JLS sing 226 n n 
CAQ CAR JLS sing 227 n n 
CAR CAS JLS sing 228 n n 
CAT CAU JLS sing 229 n n 
CAT CAS JLS sing 230 n n 
CAB H1 JLS sing 231 n n 
CAB H2 JLS sing 232 n n 
CAC H3 JLS sing 233 n n 
CAC H4 JLS sing 234 n n 
CAD H5 JLS sing 235 n n 
CAD H6 JLS sing 236 n n 
CAE H7 JLS sing 237 n n 
CAE H8 JLS sing 238 n n 
CAF H9 JLS sing 239 n n 
CAF H10 JLS sing 240 n n 
CAG H11 JLS sing 241 n n 
CAG H12 JLS sing 242 n n 
CAH H13 JLS sing 243 n n 
CAH H14 JLS sing 244 n n 
CAI H15 JLS sing 245 n n 
CAI H16 JLS sing 246 n n 
CAJ H17 JLS sing 247 n n 
CAJ H18 JLS sing 248 n n 
CAK H19 JLS sing 249 n n 
CAK H20 JLS sing 250 n n 
CAL H21 JLS sing 251 n n 
CAL H22 JLS sing 252 n n 
CAM H23 JLS sing 253 n n 
CAM H24 JLS sing 254 n n 
CAN H25 JLS sing 255 n n 
CAN H26 JLS sing 256 n n 
CAO H27 JLS sing 257 n n 
CAP H28 JLS sing 258 n n 
CAQ H29 JLS sing 259 n n 
CAQ H30 JLS sing 260 n n 
CAR H31 JLS sing 261 n n 
CAR H32 JLS sing 262 n n 
CAS H33 JLS sing 263 n n 
CAS H34 JLS sing 264 n n 
CAT H35 JLS sing 265 n n 
CAT H36 JLS sing 266 n n 
CAU H37 JLS sing 267 n n 
CAU H38 JLS sing 268 n n 
CAV H39 JLS sing 269 n n 
CAV H40 JLS sing 270 n n 
CAW H41 JLS sing 271 n n 
CAW H42 JLS sing 272 n n 
CAX H43 JLS sing 273 n n 
CAX H44 JLS sing 274 n n 
CAX H45 JLS sing 275 n n 
C1 H46 JLS sing 276 n n 
C1 H47 JLS sing 277 n n 
C1A H48 JLS sing 278 n n 
C2 H49 JLS sing 279 n n 
C2A H50 JLS sing 280 n n 
N2 H51 JLS sing 281 n n 
O2A H52 JLS sing 282 n n 
C3 H53 JLS sing 283 n n 
C3A H54 JLS sing 284 n n 
O3 H55 JLS sing 285 n n 
O3A H56 JLS sing 286 n n 
C4 H57 JLS sing 287 n n 
C4A H58 JLS sing 288 n n 
O4 H59 JLS sing 289 n n 
O4A H60 JLS sing 290 n n 
C5 H61 JLS sing 291 n n 
C5 H62 JLS sing 292 n n 
C5M H63 JLS sing 293 n n 
O6A H64 JLS sing 294 n n 
C6 H65 JLS sing 295 n n 
C6 H66 JLS sing 296 n n 
C6A H67 JLS sing 297 n n 
C6A H68 JLS sing 298 n n 
C7 H69 JLS sing 299 n n 
C7 H70 JLS sing 300 n n 
C8 H71 JLS sing 301 n n 
C8 H72 JLS sing 302 n n 
C9 H73 JLS sing 303 n n 
C9 H74 JLS sing 304 n n 
C10 H75 JLS sing 305 n n 
C10 H76 JLS sing 306 n n 
C11 H77 JLS sing 307 n n 
C11 H78 JLS sing 308 n n 
C12 H79 JLS sing 309 n n 
C12 H80 JLS sing 310 n n 
C13 H81 JLS sing 311 n n 
C13 H82 JLS sing 312 n n 
C14 H83 JLS sing 313 n n 
C14 H84 JLS sing 314 n n 
C15 H85 JLS sing 315 n n 
C15 H86 JLS sing 316 n n 
C16 H87 JLS sing 317 n n 
C16 H88 JLS sing 318 n n 
C17 H89 JLS sing 319 n n 
C17 H90 JLS sing 320 n n 
C18 H91 JLS sing 321 n n 
C18 H92 JLS sing 322 n n 
C18 H93 JLS sing 323 n n 
#
_atom_sites.entry_id                     4WWK 
_atom_sites.fract_transf_matrix[1][1]    0.017737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG C 1 301 303 NAG NAG . 
F 5 NAG C 1 302 305 NAG NAG . 
G 6 JLS C 1 303 3000 JLS JLS . 
H 7 HOH C 1 401 3 HOH HOH . 
H 7 HOH C 2 402 2 HOH HOH . 
I 7 HOH D 1 101 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA JLS . . . G 6 20.036 34.625 329.258 1 26.33 ? CAA JLS 303 C 1 
HETATM 2 C CAB JLS . . . G 6 18.805 35.395 329.688 1 24.3 ? CAB JLS 303 C 1 
HETATM 3 C CAC JLS . . . G 6 17.874 35.656 328.508 1 23.3 ? CAC JLS 303 C 1 
HETATM 4 C CAD JLS . . . G 6 17.308 37.066 328.479 1 24.81 ? CAD JLS 303 C 1 
HETATM 5 C CAE JLS . . . G 6 16.711 37.355 327.102 1 27.86 ? CAE JLS 303 C 1 
HETATM 6 C CAF JLS . . . G 6 17.006 38.775 326.61 1 30.5 ? CAF JLS 303 C 1 
HETATM 7 C CAG JLS . . . G 6 17.508 38.804 325.168 1 32.92 ? CAG JLS 303 C 1 
HETATM 8 C CAH JLS . . . G 6 16.56 39.593 324.266 1 36.97 ? CAH JLS 303 C 1 
HETATM 9 C CAI JLS . . . G 6 16.031 38.744 323.108 1 39.82 ? CAI JLS 303 C 1 
HETATM 10 C CAJ JLS . . . G 6 15.894 39.54 321.807 1 40.38 ? CAJ JLS 303 C 1 
HETATM 11 C CAK JLS . . . G 6 16.53 38.808 320.624 1 40.48 ? CAK JLS 303 C 1 
HETATM 12 C CAL JLS . . . G 6 16.547 39.685 319.373 1 41.96 ? CAL JLS 303 C 1 
HETATM 13 C CAM JLS . . . G 6 17.951 40.176 319.006 1 43.14 ? CAM JLS 303 C 1 
HETATM 14 C CAN JLS . . . G 6 18.238 41.598 319.501 1 43.62 ? CAN JLS 303 C 1 
HETATM 15 C CAO JLS . . . G 6 17.822 42.638 318.476 1 44.34 ? CAO JLS 303 C 1 
HETATM 16 C CAP JLS . . . G 6 18.136 43.947 318.499 1 44.79 ? CAP JLS 303 C 1 
HETATM 17 C CAQ JLS . . . G 6 18.98 44.672 319.532 1 44.15 ? CAQ JLS 303 C 1 
HETATM 18 C CAR JLS . . . G 6 18.176 44.981 320.793 1 45.19 ? CAR JLS 303 C 1 
HETATM 19 C CAS JLS . . . G 6 17.582 46.387 320.813 1 47.25 ? CAS JLS 303 C 1 
HETATM 20 C CAT JLS . . . G 6 17.224 46.834 322.234 1 49.75 ? CAT JLS 303 C 1 
HETATM 21 C CAU JLS . . . G 6 15.85 46.315 322.687 1 51.9 ? CAU JLS 303 C 1 
HETATM 22 C CAV JLS . . . G 6 15.595 46.501 324.186 1 51.23 ? CAV JLS 303 C 1 
HETATM 23 C CAW JLS . . . G 6 14.863 45.302 324.786 1 49.19 ? CAW JLS 303 C 1 
HETATM 24 C CAX JLS . . . G 6 14.544 45.535 326.246 1 48.38 ? CAX JLS 303 C 1 
HETATM 25 O OAA JLS . . . G 6 20.977 35.237 328.76 1 30.48 ? OAA JLS 303 C 1 
HETATM 26 C C1 JLS . . . G 6 22.173 32.441 330.137 1 29.51 ? C1 JLS 303 C 1 
HETATM 27 C C1A JLS . . . G 6 22.557 31.064 332.08 1 33.49 ? C1A JLS 303 C 1 
HETATM 28 O O1A JLS . . . G 6 21.627 31.837 331.311 1 32.45 ? O1A JLS 303 C 1 
HETATM 29 C C2 JLS . . . G 6 21.132 32.433 329.017 1 25.86 ? C2 JLS 303 C 1 
HETATM 30 C C2A JLS . . . G 6 21.776 30.097 332.985 1 34.35 ? C2A JLS 303 C 1 
HETATM 31 N N2 JLS . . . G 6 20.023 33.297 329.43 1 24.73 ? N2 JLS 303 C 1 
HETATM 32 O O2A JLS . . . G 6 20.784 29.416 332.215 1 35.53 ? O2A JLS 303 C 1 
HETATM 33 C C3 JLS . . . G 6 20.618 31.015 328.73 1 25.57 ? C3 JLS 303 C 1 
HETATM 34 C C3A JLS . . . G 6 21.062 30.817 334.138 1 33.7 ? C3A JLS 303 C 1 
HETATM 35 O O3 JLS . . . G 6 21.682 30.1 328.435 1 26.5 ? O3 JLS 303 C 1 
HETATM 36 O O3A JLS . . . G 6 20.408 29.873 335.001 1 32.13 ? O3A JLS 303 C 1 
HETATM 37 C C4 JLS . . . G 6 19.521 30.931 327.67 1 24.84 ? C4 JLS 303 C 1 
HETATM 38 C C4A JLS . . . G 6 21.94 31.856 334.866 1 34.94 ? C4A JLS 303 C 1 
HETATM 39 O O4 JLS . . . G 6 19.039 29.579 327.646 1 27.19 ? O4 JLS 303 C 1 
HETATM 40 O O4A JLS . . . G 6 22.954 31.215 335.653 1 36.44 ? O4A JLS 303 C 1 
HETATM 41 C C5 JLS . . . G 6 19.915 31.394 326.263 1 23.67 ? C5 JLS 303 C 1 
HETATM 42 C C5M JLS . . . G 6 22.606 32.745 333.806 1 34.82 ? C5M JLS 303 C 1 
HETATM 43 O O6A JLS . . . G 6 24.178 34.476 333.217 1 33.55 ? O6A JLS 303 C 1 
HETATM 44 C C6 JLS . . . G 6 18.872 31.081 325.185 1 23.5 ? C6 JLS 303 C 1 
HETATM 45 C C6A JLS . . . G 6 23.525 33.847 334.325 1 35.29 ? C6A JLS 303 C 1 
HETATM 46 O O5A JLS . . . G 6 23.368 31.933 332.891 1 34.48 ? O5A JLS 303 C 1 
HETATM 47 C C7 JLS . . . G 6 17.489 31.692 325.441 1 23.37 ? C7 JLS 303 C 1 
HETATM 48 C C8 JLS . . . G 6 16.551 31.542 324.246 1 22.76 ? C8 JLS 303 C 1 
HETATM 49 C C9 JLS . . . G 6 15.745 30.249 324.321 1 22.36 ? C9 JLS 303 C 1 
HETATM 50 C C10 JLS . . . G 6 15.091 29.921 322.987 1 21.95 ? C10 JLS 303 C 1 
HETATM 51 C C11 JLS . . . G 6 15.929 28.901 322.228 1 21.95 ? C11 JLS 303 C 1 
HETATM 52 C C12 JLS . . . G 6 15.112 27.675 321.829 1 22.61 ? C12 JLS 303 C 1 
HETATM 53 C C13 JLS . . . G 6 15.652 27.067 320.539 1 23.26 ? C13 JLS 303 C 1 
HETATM 54 C C14 JLS . . . G 6 16.623 25.922 320.798 1 25.01 ? C14 JLS 303 C 1 
HETATM 55 C C15 JLS . . . G 6 16.411 24.8 319.785 1 29.43 ? C15 JLS 303 C 1 
HETATM 56 C C16 JLS . . . G 6 17.734 24.38 319.149 1 30.89 ? C16 JLS 303 C 1 
HETATM 57 C C17 JLS . . . G 6 17.523 23.459 317.951 1 32 ? C17 JLS 303 C 1 
HETATM 58 C C18 JLS . . . G 6 18.854 22.887 317.517 1 32.83 ? C18 JLS 303 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           58 
#