data_4WWQ # _model_server_result.job_id jjmEleCg9rt6tO0K8Qm5Hg _model_server_result.datetime_utc '2025-08-31 14:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4WWQ # _exptl.entry_id 4WWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WWQ _cell.length_a 84 _cell.length_b 84 _cell.length_c 75.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 114 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 526 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 115 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 527 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.021 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 4WWQ _atom_sites.fract_transf_matrix[1][1] 0.011905 _atom_sites.fract_transf_matrix[1][2] 0.006873 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA A 1 601 1 MLA MLA . D 3 HOH A 1 701 152 HOH HOH . D 3 HOH A 2 702 83 HOH HOH . D 3 HOH A 3 703 69 HOH HOH . D 3 HOH A 4 704 17 HOH HOH . D 3 HOH A 5 705 7 HOH HOH . D 3 HOH A 6 706 47 HOH HOH . D 3 HOH A 7 707 81 HOH HOH . D 3 HOH A 8 708 84 HOH HOH . D 3 HOH A 9 709 97 HOH HOH . D 3 HOH A 10 710 6 HOH HOH . D 3 HOH A 11 711 37 HOH HOH . D 3 HOH A 12 712 154 HOH HOH . D 3 HOH A 13 713 75 HOH HOH . D 3 HOH A 14 714 43 HOH HOH . D 3 HOH A 15 715 27 HOH HOH . D 3 HOH A 16 716 52 HOH HOH . D 3 HOH A 17 717 34 HOH HOH . D 3 HOH A 18 718 31 HOH HOH . D 3 HOH A 19 719 128 HOH HOH . D 3 HOH A 20 720 33 HOH HOH . D 3 HOH A 21 721 3 HOH HOH . D 3 HOH A 22 722 147 HOH HOH . D 3 HOH A 23 723 21 HOH HOH . D 3 HOH A 24 724 19 HOH HOH . D 3 HOH A 25 725 16 HOH HOH . D 3 HOH A 26 726 25 HOH HOH . D 3 HOH A 27 727 1 HOH HOH . D 3 HOH A 28 728 129 HOH HOH . D 3 HOH A 29 729 120 HOH HOH . D 3 HOH A 30 730 115 HOH HOH . D 3 HOH A 31 731 150 HOH HOH . D 3 HOH A 32 732 149 HOH HOH . D 3 HOH A 33 733 159 HOH HOH . D 3 HOH A 34 734 107 HOH HOH . D 3 HOH A 35 735 2 HOH HOH . D 3 HOH A 36 736 4 HOH HOH . D 3 HOH A 37 737 8 HOH HOH . D 3 HOH A 38 738 9 HOH HOH . D 3 HOH A 39 739 10 HOH HOH . D 3 HOH A 40 740 11 HOH HOH . D 3 HOH A 41 741 12 HOH HOH . D 3 HOH A 42 742 13 HOH HOH . D 3 HOH A 43 743 15 HOH HOH . D 3 HOH A 44 744 18 HOH HOH . D 3 HOH A 45 745 20 HOH HOH . D 3 HOH A 46 746 22 HOH HOH . D 3 HOH A 47 747 23 HOH HOH . D 3 HOH A 48 748 24 HOH HOH . D 3 HOH A 49 749 29 HOH HOH . D 3 HOH A 50 750 30 HOH HOH . D 3 HOH A 51 751 32 HOH HOH . D 3 HOH A 52 752 35 HOH HOH . D 3 HOH A 53 753 36 HOH HOH . D 3 HOH A 54 754 38 HOH HOH . D 3 HOH A 55 755 39 HOH HOH . D 3 HOH A 56 756 42 HOH HOH . D 3 HOH A 57 757 59 HOH HOH . D 3 HOH A 58 758 71 HOH HOH . D 3 HOH A 59 759 76 HOH HOH . D 3 HOH A 60 760 78 HOH HOH . D 3 HOH A 61 761 86 HOH HOH . D 3 HOH A 62 762 95 HOH HOH . D 3 HOH A 63 763 96 HOH HOH . D 3 HOH A 64 764 101 HOH HOH . D 3 HOH A 65 765 103 HOH HOH . D 3 HOH A 66 766 110 HOH HOH . D 3 HOH A 67 767 111 HOH HOH . D 3 HOH A 68 768 116 HOH HOH . D 3 HOH A 69 769 117 HOH HOH . D 3 HOH A 70 770 119 HOH HOH . D 3 HOH A 71 771 123 HOH HOH . D 3 HOH A 72 772 124 HOH HOH . D 3 HOH A 73 773 125 HOH HOH . D 3 HOH A 74 774 130 HOH HOH . D 3 HOH A 75 775 148 HOH HOH . D 3 HOH A 76 776 151 HOH HOH . D 3 HOH A 77 777 153 HOH HOH . E 3 HOH B 1 601 108 HOH HOH . E 3 HOH B 2 602 68 HOH HOH . E 3 HOH B 3 603 133 HOH HOH . E 3 HOH B 4 604 14 HOH HOH . E 3 HOH B 5 605 72 HOH HOH . E 3 HOH B 6 606 141 HOH HOH . E 3 HOH B 7 607 106 HOH HOH . E 3 HOH B 8 608 122 HOH HOH . E 3 HOH B 9 609 65 HOH HOH . E 3 HOH B 10 610 58 HOH HOH . E 3 HOH B 11 611 48 HOH HOH . E 3 HOH B 12 612 80 HOH HOH . E 3 HOH B 13 613 28 HOH HOH . E 3 HOH B 14 614 92 HOH HOH . E 3 HOH B 15 615 5 HOH HOH . E 3 HOH B 16 616 100 HOH HOH . E 3 HOH B 17 617 104 HOH HOH . E 3 HOH B 18 618 98 HOH HOH . E 3 HOH B 19 619 54 HOH HOH . E 3 HOH B 20 620 131 HOH HOH . E 3 HOH B 21 621 102 HOH HOH . E 3 HOH B 22 622 41 HOH HOH . E 3 HOH B 23 623 109 HOH HOH . E 3 HOH B 24 624 121 HOH HOH . E 3 HOH B 25 625 79 HOH HOH . E 3 HOH B 26 626 49 HOH HOH . E 3 HOH B 27 627 61 HOH HOH . E 3 HOH B 28 628 138 HOH HOH . E 3 HOH B 29 629 126 HOH HOH . E 3 HOH B 30 630 40 HOH HOH . E 3 HOH B 31 631 134 HOH HOH . E 3 HOH B 32 632 87 HOH HOH . E 3 HOH B 33 633 157 HOH HOH . E 3 HOH B 34 634 118 HOH HOH . E 3 HOH B 35 635 113 HOH HOH . E 3 HOH B 36 636 114 HOH HOH . E 3 HOH B 37 637 132 HOH HOH . E 3 HOH B 38 638 26 HOH HOH . E 3 HOH B 39 639 44 HOH HOH . E 3 HOH B 40 640 45 HOH HOH . E 3 HOH B 41 641 46 HOH HOH . E 3 HOH B 42 642 50 HOH HOH . E 3 HOH B 43 643 51 HOH HOH . E 3 HOH B 44 644 53 HOH HOH . E 3 HOH B 45 645 55 HOH HOH . E 3 HOH B 46 646 56 HOH HOH . E 3 HOH B 47 647 57 HOH HOH . E 3 HOH B 48 648 60 HOH HOH . E 3 HOH B 49 649 62 HOH HOH . E 3 HOH B 50 650 63 HOH HOH . E 3 HOH B 51 651 64 HOH HOH . E 3 HOH B 52 652 66 HOH HOH . E 3 HOH B 53 653 67 HOH HOH . E 3 HOH B 54 654 70 HOH HOH . E 3 HOH B 55 655 73 HOH HOH . E 3 HOH B 56 656 74 HOH HOH . E 3 HOH B 57 657 77 HOH HOH . E 3 HOH B 58 658 82 HOH HOH . E 3 HOH B 59 659 85 HOH HOH . E 3 HOH B 60 660 88 HOH HOH . E 3 HOH B 61 661 89 HOH HOH . E 3 HOH B 62 662 90 HOH HOH . E 3 HOH B 63 663 91 HOH HOH . E 3 HOH B 64 664 93 HOH HOH . E 3 HOH B 65 665 94 HOH HOH . E 3 HOH B 66 666 99 HOH HOH . E 3 HOH B 67 667 105 HOH HOH . E 3 HOH B 68 668 112 HOH HOH . E 3 HOH B 69 669 127 HOH HOH . E 3 HOH B 70 670 135 HOH HOH . E 3 HOH B 71 671 136 HOH HOH . E 3 HOH B 72 672 137 HOH HOH . E 3 HOH B 73 673 139 HOH HOH . E 3 HOH B 74 674 140 HOH HOH . E 3 HOH B 75 675 142 HOH HOH . E 3 HOH B 76 676 143 HOH HOH . E 3 HOH B 77 677 144 HOH HOH . E 3 HOH B 78 678 145 HOH HOH . E 3 HOH B 79 679 146 HOH HOH . E 3 HOH B 80 680 155 HOH HOH . E 3 HOH B 81 681 156 HOH HOH . E 3 HOH B 82 682 158 HOH HOH . E 3 HOH B 83 683 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 2 27.994 3.55 10.632 1 13.35 ? C1 MLA 601 A 1 HETATM 2 O O1A MLA . . . C 2 28.213 4.723 11.033 1 15.69 ? O1A MLA 601 A 1 HETATM 3 O O1B MLA . . . C 2 27.213 3.335 9.667 1 14.24 ? O1B MLA 601 A 1 HETATM 4 C C2 MLA . . . C 2 28.68 2.386 11.308 1 15.56 ? C2 MLA 601 A 1 HETATM 5 C C3 MLA . . . C 2 27.73 1.205 11.398 1 17.49 ? C3 MLA 601 A 1 HETATM 6 O O3A MLA . . . C 2 28.091 0.071 10.979 1 21.12 ? O3A MLA 601 A 1 HETATM 7 O O3B MLA . . . C 2 26.584 1.349 11.888 1 15.25 ? O3B MLA 601 A 1 HETATM 8 H HC21 MLA . . . C 2 29.473 2.126 10.803 1 18.67 ? HC21 MLA 601 A 1 HETATM 9 H HC22 MLA . . . C 2 28.945 2.659 12.208 1 18.67 ? HC22 MLA 601 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #