data_4WX4 # _model_server_result.job_id ADRr7Nbei4_bIlIO3BNBbg _model_server_result.datetime_utc '2024-11-26 01:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4WX4 # _exptl.entry_id 4WX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.16 _cell.angle_gamma 90 _cell.entry_id 4WX4 _cell.length_a 41.454 _cell.length_b 42.79 _cell.length_c 59.059 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 104 1_555 B SG CYS 9 C CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A SG CYS 123 A CYS 122 1_555 C C9 3VF . A 3VF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 138 n n N1 C6 EPE sing 139 n n N1 C9 EPE sing 140 n n C2 C3 EPE sing 141 n n C2 H21 EPE sing 142 n n C2 H22 EPE sing 143 n n C3 N4 EPE sing 144 n n C3 H31 EPE sing 145 n n C3 H32 EPE sing 146 n n N4 C5 EPE sing 147 n n N4 C7 EPE sing 148 n n C5 C6 EPE sing 149 n n C5 H51 EPE sing 150 n n C5 H52 EPE sing 151 n n C6 H61 EPE sing 152 n n C6 H62 EPE sing 153 n n C7 C8 EPE sing 154 n n C7 H71 EPE sing 155 n n C7 H72 EPE sing 156 n n C8 O8 EPE sing 157 n n C8 H81 EPE sing 158 n n C8 H82 EPE sing 159 n n O8 HO8 EPE sing 160 n n C9 C10 EPE sing 161 n n C9 H91 EPE sing 162 n n C9 H92 EPE sing 163 n n C10 S EPE sing 164 n n C10 H101 EPE sing 165 n n C10 H102 EPE sing 166 n n S O1S EPE doub 167 n n S O2S EPE doub 168 n n S O3S EPE sing 169 n n O3S HOS3 EPE sing 170 n n # _atom_sites.entry_id 4WX4 _atom_sites.fract_transf_matrix[1][1] 0.024123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3VF A 1 301 1 3VF LI1 . D 4 EPE A 1 302 1 EPE EPE . E 5 GLY C 1 401 300 GLY GLY . F 6 HOH A 1 401 175 HOH HOH . F 6 HOH A 2 402 164 HOH HOH . F 6 HOH A 3 403 236 HOH HOH . F 6 HOH A 4 404 221 HOH HOH . F 6 HOH A 5 405 74 HOH HOH . F 6 HOH A 6 406 254 HOH HOH . F 6 HOH A 7 407 231 HOH HOH . F 6 HOH A 8 408 230 HOH HOH . F 6 HOH A 9 409 72 HOH HOH . F 6 HOH A 10 410 100 HOH HOH . F 6 HOH A 11 411 242 HOH HOH . F 6 HOH A 12 412 82 HOH HOH . F 6 HOH A 13 413 108 HOH HOH . F 6 HOH A 14 414 40 HOH HOH . F 6 HOH A 15 415 133 HOH HOH . F 6 HOH A 16 416 119 HOH HOH . F 6 HOH A 17 417 94 HOH HOH . F 6 HOH A 18 418 15 HOH HOH . F 6 HOH A 19 419 71 HOH HOH . F 6 HOH A 20 420 39 HOH HOH . F 6 HOH A 21 421 41 HOH HOH . F 6 HOH A 22 422 16 HOH HOH . F 6 HOH A 23 423 59 HOH HOH . F 6 HOH A 24 424 213 HOH HOH . F 6 HOH A 25 425 53 HOH HOH . F 6 HOH A 26 426 223 HOH HOH . F 6 HOH A 27 427 1 HOH HOH . F 6 HOH A 28 428 128 HOH HOH . F 6 HOH A 29 429 115 HOH HOH . F 6 HOH A 30 430 69 HOH HOH . F 6 HOH A 31 431 34 HOH HOH . F 6 HOH A 32 432 200 HOH HOH . F 6 HOH A 33 433 78 HOH HOH . F 6 HOH A 34 434 88 HOH HOH . F 6 HOH A 35 435 117 HOH HOH . F 6 HOH A 36 436 2 HOH HOH . F 6 HOH A 37 437 93 HOH HOH . F 6 HOH A 38 438 207 HOH HOH . F 6 HOH A 39 439 181 HOH HOH . F 6 HOH A 40 440 11 HOH HOH . F 6 HOH A 41 441 101 HOH HOH . F 6 HOH A 42 442 17 HOH HOH . F 6 HOH A 43 443 235 HOH HOH . F 6 HOH A 44 444 161 HOH HOH . F 6 HOH A 45 445 140 HOH HOH . F 6 HOH A 46 446 189 HOH HOH . F 6 HOH A 47 447 26 HOH HOH . F 6 HOH A 48 448 22 HOH HOH . F 6 HOH A 49 449 158 HOH HOH . F 6 HOH A 50 450 130 HOH HOH . F 6 HOH A 51 451 147 HOH HOH . F 6 HOH A 52 452 28 HOH HOH . F 6 HOH A 53 453 131 HOH HOH . F 6 HOH A 54 454 256 HOH HOH . F 6 HOH A 55 455 98 HOH HOH . F 6 HOH A 56 456 171 HOH HOH . F 6 HOH A 57 457 113 HOH HOH . F 6 HOH A 58 458 157 HOH HOH . F 6 HOH A 59 459 47 HOH HOH . F 6 HOH A 60 460 70 HOH HOH . F 6 HOH A 61 461 6 HOH HOH . F 6 HOH A 62 462 36 HOH HOH . F 6 HOH A 63 463 212 HOH HOH . F 6 HOH A 64 464 123 HOH HOH . F 6 HOH A 65 465 188 HOH HOH . F 6 HOH A 66 466 109 HOH HOH . F 6 HOH A 67 467 97 HOH HOH . F 6 HOH A 68 468 99 HOH HOH . F 6 HOH A 69 469 144 HOH HOH . F 6 HOH A 70 470 170 HOH HOH . F 6 HOH A 71 471 182 HOH HOH . F 6 HOH A 72 472 48 HOH HOH . F 6 HOH A 73 473 247 HOH HOH . F 6 HOH A 74 474 239 HOH HOH . F 6 HOH A 75 475 238 HOH HOH . F 6 HOH A 76 476 259 HOH HOH . F 6 HOH A 77 477 219 HOH HOH . F 6 HOH A 78 478 20 HOH HOH . F 6 HOH A 79 479 86 HOH HOH . F 6 HOH A 80 480 245 HOH HOH . F 6 HOH A 81 481 260 HOH HOH . F 6 HOH A 82 482 208 HOH HOH . F 6 HOH A 83 483 218 HOH HOH . F 6 HOH A 84 484 233 HOH HOH . F 6 HOH A 85 485 172 HOH HOH . F 6 HOH A 86 486 174 HOH HOH . F 6 HOH A 87 487 127 HOH HOH . F 6 HOH A 88 488 196 HOH HOH . F 6 HOH A 89 489 186 HOH HOH . F 6 HOH A 90 490 176 HOH HOH . F 6 HOH A 91 491 255 HOH HOH . F 6 HOH A 92 492 43 HOH HOH . F 6 HOH A 93 493 132 HOH HOH . F 6 HOH A 94 494 77 HOH HOH . F 6 HOH A 95 495 173 HOH HOH . F 6 HOH A 96 496 192 HOH HOH . F 6 HOH A 97 497 89 HOH HOH . F 6 HOH A 98 498 203 HOH HOH . F 6 HOH A 99 499 104 HOH HOH . F 6 HOH A 100 500 205 HOH HOH . F 6 HOH A 101 501 198 HOH HOH . F 6 HOH A 102 502 145 HOH HOH . F 6 HOH A 103 503 210 HOH HOH . F 6 HOH A 104 504 199 HOH HOH . F 6 HOH A 105 505 3 HOH HOH . F 6 HOH A 106 506 5 HOH HOH . F 6 HOH A 107 507 7 HOH HOH . F 6 HOH A 108 508 8 HOH HOH . F 6 HOH A 109 509 9 HOH HOH . F 6 HOH A 110 510 10 HOH HOH . F 6 HOH A 111 511 12 HOH HOH . F 6 HOH A 112 512 13 HOH HOH . F 6 HOH A 113 513 14 HOH HOH . F 6 HOH A 114 514 18 HOH HOH . F 6 HOH A 115 515 19 HOH HOH . F 6 HOH A 116 516 21 HOH HOH . F 6 HOH A 117 517 23 HOH HOH . F 6 HOH A 118 518 24 HOH HOH . F 6 HOH A 119 519 25 HOH HOH . F 6 HOH A 120 520 27 HOH HOH . F 6 HOH A 121 521 29 HOH HOH . F 6 HOH A 122 522 30 HOH HOH . F 6 HOH A 123 523 32 HOH HOH . F 6 HOH A 124 524 33 HOH HOH . F 6 HOH A 125 525 35 HOH HOH . F 6 HOH A 126 526 38 HOH HOH . F 6 HOH A 127 527 45 HOH HOH . F 6 HOH A 128 528 46 HOH HOH . F 6 HOH A 129 529 49 HOH HOH . F 6 HOH A 130 530 50 HOH HOH . F 6 HOH A 131 531 51 HOH HOH . F 6 HOH A 132 532 54 HOH HOH . F 6 HOH A 133 533 55 HOH HOH . F 6 HOH A 134 534 56 HOH HOH . F 6 HOH A 135 535 60 HOH HOH . F 6 HOH A 136 536 61 HOH HOH . F 6 HOH A 137 537 62 HOH HOH . F 6 HOH A 138 538 63 HOH HOH . F 6 HOH A 139 539 64 HOH HOH . F 6 HOH A 140 540 65 HOH HOH . F 6 HOH A 141 541 67 HOH HOH . F 6 HOH A 142 542 68 HOH HOH . F 6 HOH A 143 543 73 HOH HOH . F 6 HOH A 144 544 75 HOH HOH . F 6 HOH A 145 545 76 HOH HOH . F 6 HOH A 146 546 79 HOH HOH . F 6 HOH A 147 547 80 HOH HOH . F 6 HOH A 148 548 81 HOH HOH . F 6 HOH A 149 549 84 HOH HOH . F 6 HOH A 150 550 85 HOH HOH . F 6 HOH A 151 551 87 HOH HOH . F 6 HOH A 152 552 90 HOH HOH . F 6 HOH A 153 553 91 HOH HOH . F 6 HOH A 154 554 92 HOH HOH . F 6 HOH A 155 555 95 HOH HOH . F 6 HOH A 156 556 96 HOH HOH . F 6 HOH A 157 557 102 HOH HOH . F 6 HOH A 158 558 103 HOH HOH . F 6 HOH A 159 559 105 HOH HOH . F 6 HOH A 160 560 107 HOH HOH . F 6 HOH A 161 561 110 HOH HOH . F 6 HOH A 162 562 111 HOH HOH . F 6 HOH A 163 563 112 HOH HOH . F 6 HOH A 164 564 114 HOH HOH . F 6 HOH A 165 565 116 HOH HOH . F 6 HOH A 166 566 118 HOH HOH . F 6 HOH A 167 567 120 HOH HOH . F 6 HOH A 168 568 121 HOH HOH . F 6 HOH A 169 569 122 HOH HOH . F 6 HOH A 170 570 125 HOH HOH . F 6 HOH A 171 571 129 HOH HOH . F 6 HOH A 172 572 134 HOH HOH . F 6 HOH A 173 573 136 HOH HOH . F 6 HOH A 174 574 137 HOH HOH . F 6 HOH A 175 575 138 HOH HOH . F 6 HOH A 176 576 139 HOH HOH . F 6 HOH A 177 577 142 HOH HOH . F 6 HOH A 178 578 143 HOH HOH . F 6 HOH A 179 579 146 HOH HOH . F 6 HOH A 180 580 149 HOH HOH . F 6 HOH A 181 581 150 HOH HOH . F 6 HOH A 182 582 151 HOH HOH . F 6 HOH A 183 583 152 HOH HOH . F 6 HOH A 184 584 154 HOH HOH . F 6 HOH A 185 585 155 HOH HOH . F 6 HOH A 186 586 156 HOH HOH . F 6 HOH A 187 587 159 HOH HOH . F 6 HOH A 188 588 160 HOH HOH . F 6 HOH A 189 589 162 HOH HOH . F 6 HOH A 190 590 165 HOH HOH . F 6 HOH A 191 591 166 HOH HOH . F 6 HOH A 192 592 167 HOH HOH . F 6 HOH A 193 593 168 HOH HOH . F 6 HOH A 194 594 169 HOH HOH . F 6 HOH A 195 595 177 HOH HOH . F 6 HOH A 196 596 178 HOH HOH . F 6 HOH A 197 597 179 HOH HOH . F 6 HOH A 198 598 183 HOH HOH . F 6 HOH A 199 599 185 HOH HOH . F 6 HOH A 200 600 187 HOH HOH . F 6 HOH A 201 601 190 HOH HOH . F 6 HOH A 202 602 191 HOH HOH . F 6 HOH A 203 603 193 HOH HOH . F 6 HOH A 204 604 195 HOH HOH . F 6 HOH A 205 605 197 HOH HOH . F 6 HOH A 206 606 201 HOH HOH . F 6 HOH A 207 607 206 HOH HOH . F 6 HOH A 208 608 209 HOH HOH . F 6 HOH A 209 609 214 HOH HOH . F 6 HOH A 210 610 215 HOH HOH . F 6 HOH A 211 611 216 HOH HOH . F 6 HOH A 212 612 217 HOH HOH . F 6 HOH A 213 613 220 HOH HOH . F 6 HOH A 214 614 222 HOH HOH . F 6 HOH A 215 615 224 HOH HOH . F 6 HOH A 216 616 225 HOH HOH . F 6 HOH A 217 617 227 HOH HOH . F 6 HOH A 218 618 228 HOH HOH . F 6 HOH A 219 619 229 HOH HOH . F 6 HOH A 220 620 232 HOH HOH . F 6 HOH A 221 621 234 HOH HOH . F 6 HOH A 222 622 237 HOH HOH . F 6 HOH A 223 623 240 HOH HOH . F 6 HOH A 224 624 241 HOH HOH . F 6 HOH A 225 625 243 HOH HOH . F 6 HOH A 226 626 244 HOH HOH . F 6 HOH A 227 627 249 HOH HOH . F 6 HOH A 228 628 250 HOH HOH . F 6 HOH A 229 629 251 HOH HOH . F 6 HOH A 230 630 252 HOH HOH . F 6 HOH A 231 631 253 HOH HOH . F 6 HOH A 232 632 257 HOH HOH . F 6 HOH A 233 633 258 HOH HOH . G 6 HOH C 1 501 4 HOH HOH . G 6 HOH C 2 502 124 HOH HOH . G 6 HOH C 3 503 141 HOH HOH . G 6 HOH C 4 504 57 HOH HOH . G 6 HOH C 5 505 44 HOH HOH . G 6 HOH C 6 506 126 HOH HOH . G 6 HOH C 7 507 248 HOH HOH . G 6 HOH C 8 508 211 HOH HOH . G 6 HOH C 9 509 31 HOH HOH . G 6 HOH C 10 510 37 HOH HOH . G 6 HOH C 11 511 58 HOH HOH . G 6 HOH C 12 512 106 HOH HOH . G 6 HOH C 13 513 148 HOH HOH . G 6 HOH C 14 514 153 HOH HOH . G 6 HOH C 15 515 202 HOH HOH . G 6 HOH C 16 516 226 HOH HOH . G 6 HOH C 17 517 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 -4.81 -6.28 2.291 1 9.16 ? N1 EPE 302 A 1 HETATM 2 C C2 EPE . . . D 4 -4.574 -6.769 0.932 1 12.74 ? C2 EPE 302 A 1 HETATM 3 C C3 EPE . . . D 4 -5.239 -5.866 -0.081 1 12.85 ? C3 EPE 302 A 1 HETATM 4 N N4 EPE . . . D 4 -4.679 -4.495 0.033 1 10.23 ? N4 EPE 302 A 1 HETATM 5 C C5 EPE . . . D 4 -4.759 -3.965 1.369 1 11.92 ? C5 EPE 302 A 1 HETATM 6 C C6 EPE . . . D 4 -4.147 -4.975 2.388 1 10.31 ? C6 EPE 302 A 1 HETATM 7 C C7 EPE . . . D 4 -5.314 -3.611 -0.983 1 15.03 ? C7 EPE 302 A 1 HETATM 8 C C8 EPE . . . D 4 -4.486 -2.242 -1.112 1 17.22 ? C8 EPE 302 A 1 HETATM 9 O O8 EPE . . . D 4 -4.91 -1.366 -0.027 1 20.81 ? O8 EPE 302 A 1 HETATM 10 C C9 EPE . . . D 4 -4.257 -7.213 3.29 1 9.3 ? C9 EPE 302 A 1 HETATM 11 C C10 EPE . . . D 4 -4.913 -7.093 4.687 1 6.7 ? C10 EPE 302 A 1 HETATM 12 S S EPE . . . D 4 -4.237 -8.299 5.768 1 6.28 ? S EPE 302 A 1 HETATM 13 O O1S EPE . . . D 4 -4.392 -9.589 5.06 1 7.28 ? O1S EPE 302 A 1 HETATM 14 O O2S EPE . . . D 4 -2.824 -7.967 5.936 1 6.71 ? O2S EPE 302 A 1 HETATM 15 O O3S EPE . . . D 4 -5.011 -8.249 7.006 1 6.73 ? O3S EPE 302 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 15 #